BAC Information

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BAC

Clone NameB6Ng01-266I09
Chromosome6 (Build37)
Map Location 87,783,858 - 87,785,066
singlet/doubletsinglet
Overlap geneIsy1
Upstream gene2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43
Downstream geneCnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266I09.bB6Ng01-266I09.g
ACCGA069899GA069900
length1,1951,182
definitionB6Ng01-266I09.b B6Ng01-266I09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagccaagatacaaagtgagactatgtcttaaaaaacag
cactgggcagtggtagtgcacacttgggaggcagaggcaagcaatttctg
tgagttcgaggtcagcctggtttacagagagttctaggacagccaaggct
acacagagaaaccctgtctcaaaaaaccaaaacagccggcatggtggcgc
acgcctttaatcccagcactcagcaggcagaggcaggcggatttctgagt
tcgaggccagcctagtctacaaagtgagttccaggacagccagggctgta
cagagaaaccctgtctcgaaaaaaacaaaaacaaaaacaaacaaaaacaa
aaaccaacaataacaaaaaacaaaacagcttttaatcctagaactaggga
ggcagaggcaggcagatctgtgaattagagactagcctggtatacacagc
tattagccaggaatacaaaaagagacccagtctcaaaaaaaaaaaaaaat
ttggttaataatcattgatgaggtaaaaagaagcaagcagagccattatt
tctactgaacatacctgccgtctccacttctccgctttcggcaactcagt
acattcagaagcaaggaagggtctccgttcctaaggagggtgagagtaac
acacatggtaactgggctctgtacacacctatgtgacatccacaaccgat
tcagccttgaaaccttaaatatttaatgctctaaatatacttgaagtcac
agtgctagaggatattcaattcctaaccatcactgtacaatctcttagga
agctatataattaggatatataattactccaggaactgtgtatagttaaa
ataaatatatacaaatatttaatctctccaggtccactctctaccttctt
ctagtcaatattaaagctggaataataaggggcaagcgggaggcagataa
tcacatgccaacagaaaagagctaagcagacgcacagtgtacaaactctc
agcaaacacagcagaagaagctgcgctcgaagcctgcatctgctcctggg
tacttccaggagtgctcactcactttgaactttcctctcagctgagctga
cgacctcgcagcagtcctgcaagcaccaaaagaccctattagaattctag
actcaagtcctggatgggggtaggagctgcgctcatgagacacag
gaattctgattggatgaggtgggtggagctagatgaggtcagtcagtgcg
aggataggagttggttgttgttgtccttgctgaagtggagagagctgtaa
gaaaaaaggccacaagtaaaagaagaagctgttttgtgaacctgacttgg
tgtctgtgtcattcttgtctctgtgggtcgaagactgcggcaagtggtgg
cctggatgggggaactcatcacgttggttggcaacagtaagtaaagaaag
tacaggcctaaggaaaccttagtaaacagcggtgaggaaatttttagtaa
aagcagcggtagggaaattttggtaagcagcggtaaggaaagtttagtaa
gcagcggtaaggaaatttaggtaagtggccagtttagaacctcttaagtt
agactgtaagagtctgtggctacctctaaattctgtgtttttatctactc
ggtcagaggtacatgtcaacatttattgtagttatttttaaatgttccct
gttaattcattttctcttaagttttttgttgtgtttagttctgtttgata
cttgaaaatgagagatcagagtgatgccatcttgtaaagggcgaaggaaa
atgcagtttccaaatggaaggcattcagattttagtagacaagtcaaata
gataggatgggtgtatcaaggccagacaggagaggcagagcagagcagag
gcaaatgtccaaagtgatctaaattatagaccaggcagctttacatttta
aaaatgggacttgcatagatagtacggacaggtaacctcagagacttgag
aaaggactactatagactgagaccattacagtgcctggcagacatatggc
cagtggaaatggctaaaggatgtaggtagacaagtcaccaaacccagcaa
ggaattataattaaatcaccagaaggtggttgaaaaataaacttaattct
gctaggagagaggaacaccttggtggaaggttggttgtattcttagctca
gtttctttttggagaggtttgaagtggattgttcttctctttcatgagga
gaaattcagaaagttctcagtatagaagatgatgtaaagttcctggtaaa
ggggacaagcataaggttccagtatagagacgaagttgaggttccaggaa
aaaaaggaagaagccactgttgaggttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87783858_87785066
seq2: B6Ng01-266I09.b_51_1245

seq1  GAATTCCAGGCCAGCCAAGATACAAAGTGAGACTATGTCTTAAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAAGATACAAAGTGAGACTATGTCTTAAAAAACAG  50

seq1  CACTGGGCAGTGGTAGTGCACACTTGGGAGGCAGAGGCAAGCAATTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCAGTGGTAGTGCACACTTGGGAGGCAGAGGCAAGCAATTTCTG  100

seq1  TGAGTTCGAGGTCAGCCTGGTTTACAGAGAGTTCTAGGACAGCCAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGTCAGCCTGGTTTACAGAGAGTTCTAGGACAGCCAAGGCT  150

seq1  ACACAGAGAAACCCTGTCTCAAAAAACCAAAACAGCCGGCATGGTGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTCAAAAAACCAAAACAGCCGGCATGGTGGCGC  200

seq1  ACGCCTTTAATCCCAGCACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGT  250

seq1  TCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTA  300

seq1  CAGAGAAACCCTGTCTCGAAAAAAACAAAAACAAAAACAAACAAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAAACAAAAACAAAAACAAACAAAAACAA  350

seq1  AAACCAACAATAACAAAAAACAAAACAGCTTTTAATCCTAGAACTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACAATAACAAAAAACAAAACAGCTTTTAATCCTAGAACTAGGGA  400

seq1  GGCAGAGGCAGGCAGATCTGTGAATTAGAGACTAGCCTGGTATACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCAGATCTGTGAATTAGAGACTAGCCTGGTATACACAGC  450

seq1  TATTAGCCAGGAATACAAAAAGAGACCCAGTCTCAAAAAAAAAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCAGGAATACAAAAAGAGACCCAGTCTCAAAAAAAAAAAAAAAT  500

seq1  TTGGTTAATAATCATTGATGAGGTAAAAAGAAGCAAGCAGAGCCATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATAATCATTGATGAGGTAAAAAGAAGCAAGCAGAGCCATTATT  550

seq1  TCTACTGAACATACCTGCCGTCTCCACTTCTCCGCTTTCGGCAACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAACATACCTGCCGTCTCCACTTCTCCGCTTTCGGCAACTCAGT  600

seq1  ACATTCAGAAGCAAGGAAGGGTCTCCGTTCCTAAGGAGGGTGAGAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAAGCAAGGAAGGGTCTCCGTTCCTAAGGAGGGTGAGAGTAAC  650

seq1  ACACATGGTAACTGGGCTCTGTACACACCTATGTGACATCCACAACCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTAACTGGGCTCTGTACACACCTATGTGACATCCACAACCGAT  700

seq1  TCAGCCTTGAAACCTTAAATATTTAATGCTCTAAATATACTTGAAGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGAAACCTTAAATATTTAATGCTCTAAATATACTTGAAGTCAC  750

seq1  AGTGCTAGAGGATATTCAATTCCTAACCATCACTGTACAATCTCTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAGGATATTCAATTCCTAACCATCACTGTACAATCTCTTAGGA  800

seq1  AGCTATATAATTAGGATATATAATTACTCCAGGAACTGTGTATAGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATAATTAGGATATATAATTACTCCAGGAACTGTGTATAGTTAAA  850

seq1  ATAAATATATACAAATATTTAATCTCTCCAGGTCCACTCTCTACCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATACAAATATTTAATCTCTCCAGGTCCACTCTCTACCTTCTT  900

seq1  CTAGTCAATATTAAAGCTGGAATAATAAGGGGCAAGCGGGAGGCAGATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCAATATTAAAGCTGGAATAATAAGGGGCAAGCGGGAGGCAGATAA  950

seq1  TCACATGCCAACAGAAAAGAGGCTAAGCAGACGCACAAGTGTACAAACTC  1000
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TCACATGCCAACAGAAAAGA-GCTAAGCAGACGCAC-AGTGTACAAACTC  998

seq1  TTCAGCAAACACAGCAGGAAGAGCTGCGGCTCGAAGCCTGCATCTGCTCC  1050
       |||||||||||||||| |  |||||| ||||||||||||||||||||||
seq2  -TCAGCAAACACAGCAGAAGAAGCTGC-GCTCGAAGCCTGCATCTGCTCC  1046

seq1  T-GGTACTTCCCAGGGAGTGCTTCACTCACCTTGACTTTTCCCTCTTCCA  1099
      | |||||||||   ||||||| |||||||| ||||  ||| |||||  ||
seq2  TGGGTACTTCC--AGGAGTGC-TCACTCACTTTGAACTTT-CCTCT--CA  1090

seq1  GCTGAGCTTGACGAAACCTCGCCAGGGCAGTCCTGCAGGCACACAAAAGA  1149
      ||||||| |||||  |||||||    ||||||||||| |||| |||||||
seq2  GCTGAGC-TGACG--ACCTCGC---AGCAGTCCTGCAAGCAC-CAAAAGA  1133

seq1  CCCCATTAGATTTCTTAGCACTCAAGTTCCTGGAT-GGGGTA-GATCT--  1195
      ||| |||||| ||| ||| ||||||| |||||||| |||||| || ||  
seq2  CCCTATTAGAATTC-TAG-ACTCAAG-TCCTGGATGGGGGTAGGAGCTGC  1180

seq1  GCTCATGA-CCACAG  1209
      ||||||||  |||||
seq2  GCTCATGAGACACAG  1195