This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Parameter
BAC name
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Search Result
BAC
Clone Name
B6Ng01-266M08
Chromosome
6 (Build37)
Map Location
12,114,788 - 12,260,680
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Ndufa4
,
Phf14
,
LOC100040844
,
EG625347
,
LOC435879
Downstream gene
Thsd7a
,
LOC667735
,
LOC384350
,
Tmem106b
,
Gm467
,
Gm725
Link
Open Mouse BAC browser
Click to get alignment info.
name
Ndufa4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17992
MGI:107686
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Phf14
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75725
MGI:1923539
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040844
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040844
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST
name
EG625347
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:625347
MGI:3643037
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
pseudo
: _no_value
name
LOC435879
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:435879
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Thsd7a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:330267
MGI:2685683
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs, 2 Proteins
name
LOC667735
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667735
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins
pseudo
: _no_value
name
LOC384350
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:384350
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 Proteins
pseudo
: _no_value
name
Tmem106b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71900
MGI:1919150
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gm467
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:232585
MGI:2685313
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gm725
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:277899
MGI:2685571
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
name
Ndufa4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142348699
GeneID:17992
MGI:107686
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4
transcript_id
: NM_010886.2
name
Phf14
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142354458
GeneID:75725
MGI:1923539
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: PHD finger protein 14
transcript_id
: NM_029404.2
name
LOC100040844
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149254864
GeneID:100040844
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST
product
: hypothetical protein LOC100040844
transcript_id
: XM_001475635.1
name
Thsd7a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149254852
GeneID:330267
MGI:2685683
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs, 2 Proteins
product
: thrombospondin, type I, domain containing 7A, transcript variant 1
transcript_id
: XM_287555.7
name
Tmem106b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142388160
GeneID:71900
MGI:1919150
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane protein 106B
transcript_id
: NM_027992.2
name
Gm467
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:85701453
GeneID:232585
MGI:2685313
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gene model 467, (NCBI)
transcript_id
: NM_001013757.1
name
Gm725
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:38083737
GeneID:277899
MGI:2685571
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
product
: gene model 725, (NCBI)
transcript_id
: XM_205592.2
name
Ndufa4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33563266
GeneID:17992
MGI:107686
definition
GO_component
: GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]
GO_function
: GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
codon_start
: 1
note
: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 (9 kDa, MLRQ)
product
: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4
protein_id
: NP_035016.1
name
Phf14
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21313038
GeneID:75725
MGI:1923539
definition
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: PHD finger protein 14
protein_id
: NP_083680.1
name
LOC100040844
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149254865
GeneID:100040844
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001475685.1
name
Thsd7a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149254853
GeneID:330267
MGI:2685683
definition
codon_start
: 1
product
: thrombospondin, type I, domain containing 7A isoform 1
protein_id
: XP_287555.6
name
Tmem106b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21624615
CCDS:CCDS19914.1
GeneID:71900
MGI:1919150
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: hypothetical protein LOC71900
protein_id
: NP_082268.1
name
Gm467
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85701454
GeneID:232585
MGI:2685313
definition
codon_start
: 1
exception
: unclassified translation discrepancy
product
: hypothetical protein LOC232585
protein_id
: NP_001013779.1
name
Gm725
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:38083738
GeneID:277899
MGI:2685571
definition
codon_start
: 1
product
: similar to putative taste receptor T2R22
protein_id
: XP_205592.2
name
LOC435879
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435879
definition
number
: 1
pseudo
: _no_value
name
LOC435879
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435879
definition
number
: 2
pseudo
: _no_value
name
LOC384350
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384350
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:124442
definition
standard_name
: 41.MMHAP90FLF5.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:130987
definition
standard_name
: D6Mit87
name
(CDS detail)
type
STS
link
xref
UniSTS:235386
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:235387
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:277259
definition
standard_name
: FUT7_665
name
(CDS detail)
type
STS
link
xref
UniSTS:124085
definition
standard_name
: 34.MMHAP36FRD10.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:130780
definition
standard_name
: D6Mit234
name
(CDS detail)
type
STS
link
xref
UniSTS:122937
definition
standard_name
: 08.MMHAP50FRC8.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:130713
definition
standard_name
: D6Mit169
name
(CDS detail)
type
STS
link
xref
UniSTS:123643
definition
standard_name
: 24.MMHAP37FRH9.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:122664
definition
standard_name
: 01.MMHAP63FLA1.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:159886
definition
standard_name
: AA987036
name
(CDS detail)
type
STS
link
xref
UniSTS:164313
definition
standard_name
: AI661344
name
(CDS detail)
type
STS
link
xref
UniSTS:159486
definition
standard_name
: AI428776
name
EG625347
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149254834
GeneID:625347
MGI:3643037
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG625347
pseudo
: _no_value
transcript_id
: XR_035136.1
name
LOC667735
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149254854
GeneID:667735
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins
product
: similar to Nohma
pseudo
: _no_value
transcript_id
: XR_031856.1
clone name
MSMg01-362F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-157E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-185L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-047H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-212D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-366K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-443M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-409A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237J09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046D14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-432G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-215A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441D07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-409F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-054A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546H14
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-363O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407L07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-216H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-215J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-069J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124A19
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-480B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-132J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-153G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-468J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130O08
singlet/doublet
doublet
plural/unique
unique
clone name
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