BAC Information

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BAC

Clone NameB6Ng01-267I03
Chromosome6 (Build37)
Map Location 8,874,238 - 8,875,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267I03.bB6Ng01-267I03.g
ACCGA070609GA070610
length1,0751,176
definitionB6Ng01-267I03.b B6Ng01-267I03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattccctgctccttttacatgtgctgtttcttaaaagttaattt
gcctaaatagcacccagatcttcagtttttgaatgctatatcccaaggaa
aggagctctggctccttagagaaactggtggatctatggctgggtcagag
aaatagaatacaggcttggaacatcttatagtgccagaaaataagggaag
agaataaagaaagatgggaacaaaaaataattcaggagaggcagaggaag
gagtgagaaaaaatataacttctgattatgtgattgctcggatatgaaga
gaatttgagtaaaacataaagctatcccttaataccacagtaatacttag
tatataagatccacttcttaatcaaaagcttaatgaaaaacagtaccagg
aaatagattccaagagccttcttaaaatacttattacatatgtgcttctt
ttaactcttcctacagtagccgaggcttaattctactgtgtgtaggctca
tctaaatgacttttctatcaaataaatgatgaaagatataaccaatatgt
tacagtgaaagactactgaagcaatcaaggtttatgttagcagtaatgag
tcatgctgacgtcatgggcgtcctttgttaaaaatccatggtttgccaag
acagctgcatagtgaaaggtgtttgctgccaagccgggtggcctgggttt
gacccaccgttcccccatagcaggaggaaaaaatgactcttaaaatgttg
caatctgatctccacatgtatatcacagcaatcatacagccacatgtgcg
tccacacaactgaataaataaatgtaattttaaaaaatgtgcaactgcat
tctagccacaggaaaacatcaggagactcaatagatagatatactacaga
atacctgataggcactgttttcaaagatatcaaggtcatcaatgccaaga
aaaggccaagactgtcactgaaaccacctgaaataaaaacagtaaataca
tgggtttccctaaaagagaaagaagacttccgagatgtatgtagtatgaa
gtaagagagagagagagagagagag
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccactttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatccttacccaatctgttggtggcct
ttttgtcttattgacggtgtctttagccttgcagaagctttgcaatttta
tgaggtccagctcaaaactttgtctctgtaactccttccatgggtgtttt
attcccaattctaagaaggggcaaagtgctgagagatcccctcataattt
ccccaaagcgtaaccatgtgtgaataaattttgagctagtagggttgcag
ccacgagtaagtcttcccttgttattgtgtagccagaatgccgcaaaact
tccatgcctaagcgaactgttgagagtacgtttcgatttctgactgtgtt
agcctggaagtgcttgtcccaaccttgtttctgagcatgaacgcccgcaa
gccaacatgttagttgaagcatcagggcgattagcagcatgatatcaaaa
cgctctgagctgctcgttcggctatggcgtaggcctagtccgtaggcagg
acttttcaagtctcggaaggtttcttcaatctgcattcgcttcgaataga
tattaacaagttgtttgggtgttcgaatttcaacaggtaagttagttgct
agaacccatggctcctttgccgacgctgagtagattttaggtgacgggtg
gtgacaatgagtccgtgtcgagcgctgattttttcggcctttagagcgag
atttatacaatagaatttggcatgagattggattgcttttagtcagcctc
ttatagcctaaagtctttgagtgactagatgacatatcatgtaagttgct
gataggtttccagttttccgctcctaggtctgcatattgtactttttctc
ttactcgacttaaccagtaccaaccagcttctcaacggatttatacatgg
cacttaagccagcatcactgacaatgagcggtgtgtgttactcggtagga
tgctcgcaagttcggctagaagtggtcatgagctttctgaaccatgcctc
tgaagccggaacgcttctctataagagttacggacgaaccgtgtaggtgc
caactgaaagcttgcccacatatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8874238_8875316
seq2: B6Ng01-267I03.b_45_1119 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTCTGA  50
      ||||||||||||||||||||||| | ||| | | | | | |  |||| ||
seq2  CTCTCTCTCTCTCTCTCTCTCTTAC-TTCATAC-TACATAC-ATCTCGGA  47

seq1  AGTCTTCTTTCTCTTTTAGG--AAACCATGTTATTTTACTGTTTTTATTT  98
      ||||||||||||||||||||  || ||||||   ||||||||||||||||
seq2  AGTCTTCTTTCTCTTTTAGGGAAACCCATGT--ATTTACTGTTTTTATTT  95

seq1  CAGGT-GTTTCAGTGACAGTCTTGGCCTTTTCTTGGCATTGATGACCTTG  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTTTCAGTGACAGTCTTGGCCTTTTCTTGGCATTGATGACCTTG  145

seq1  ATATCTTTGAAAACAGTGCCTATCAGGTATTCTGTAGTATATCTATCTAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATCTTTGAAAACAGTGCCTATCAGGTATTCTGTAGTATATCTATCTA-  194

seq1  TTGAGTCTCCCTGATGTTTTCCTGTGGCTAGAATGCAGTTGCACATTTTT  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCT-CCTGATGTTTTCCTGTGGCTAGAATGCAGTTGCACATTTTT  243

seq1  TAAAATTACATTTATTTATTCAGTTGTGTGGACGCACATGTGGCTGTATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTACATTTATTTATTCAGTTGTGTGGACGCACATGTGGCTGTATG  293

seq1  ATTGCTGTGATATACATGTGGAGATCAGATTGCAACATTTTAAGAGTCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGATATACATGTGGAGATCAGATTGCAACATTTTAAGAGTCAT  343

seq1  TTTTTCCTCCTGCTATGGGGGAACGGTGGGTCAAACCCAGGCCACCCGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCCTGCTATGGGGGAACGGTGGGTCAAACCCAGGCCACCCGGC  393

seq1  TTGGCAGCAAACACCTTTCACTATGCAGCTGTCTTGGCAAACCATGGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCAAACACCTTTCACTATGCAGCTGTCTTGGCAAACCATGGATT  443

seq1  TTTAACAAAGGACGCCCATGACGTCAGCATGACTCATTACTGCTAACATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAAGGACGCCCATGACGTCAGCATGACTCATTACTGCTAACATA  493

seq1  AACCTTGATTGCTTCAGTAGTCTTTCACTGTAACATATTGGTTATATCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGATTGCTTCAGTAGTCTTTCACTGTAACATATTGGTTATATCTT  543

seq1  TCATCATTTATTTGATAGAAAAGTCATTTAGATGAGCCTACACACAGTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTATTTGATAGAAAAGTCATTTAGATGAGCCTACACACAGTAG  593

seq1  AATTAAGCCTCGGCTACTGTAGGAAGAGTTAAAAGAAGCACATATGTAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCCTCGGCTACTGTAGGAAGAGTTAAAAGAAGCACATATGTAAT  643

seq1  AAGTATTTTAAGAAGGCTCTTGGAATCTATTTCCTGGTACTGTTTTTCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTAAGAAGGCTCTTGGAATCTATTTCCTGGTACTGTTTTTCAT  693

seq1  TAAGCTTTTGATTAAGAAGTGGATCTTATATACTAAGTATTACTGTGGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTGATTAAGAAGTGGATCTTATATACTAAGTATTACTGTGGTA  743

seq1  TTAAGGGATAGCTTTATGTTTTACTCAAATTCTCTTCATATCCGAGCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGATAGCTTTATGTTTTACTCAAATTCTCTTCATATCCGAGCAAT  793

seq1  CACATAATCAGAAGTTATATTTTTTCTCACTCCTTCCTCTGCCTCTCCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATCAGAAGTTATATTTTTTCTCACTCCTTCCTCTGCCTCTCCTG  843

seq1  AATTATTTTTTGTTCCCATCTTTCTTTATTCTCTTCCCTTATTTTCTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTTGTTCCCATCTTTCTTTATTCTCTTCCCTTATTTTCTGGC  893

seq1  ACTATAAGATGTTCCAAGCCTGTATTCTATTTCTCTGACCCAGCCATAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAGATGTTCCAAGCCTGTATTCTATTTCTCTGACCCAGCCATAGA  943

seq1  TCCACCAGTTTCTCTAAGGAGCCAGAGCTCCTTTCCTTGGGATATAGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAGTTTCTCTAAGGAGCCAGAGCTCCTTTCCTTGGGATATAGCAT  993

seq1  TCAAAAACTGAAGATCTGGGTGCTATTTAGGCAAATTAACTTTTAAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTGAAGATCTGGGTGCTATTTAGGCAAATTAACTTTTAAGAAA  1043

seq1  CAGCACATGTAAAAGGAGCAGGGAATGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  CAGCACATGTAAAAGGAGCAGGGAATGAATTC  1075