BAC Information

Click to search

BAC

Clone NameB6Ng01-268C23
Chromosome6 (Build37)
Map Location 10,010,251 - 10,132,799
singlet/doubletdoublet
Overlap geneLOC330264
Upstream geneNxph1
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C23.bB6Ng01-268C23.g
ACCGA071110GA071111
length2781,178
definitionB6Ng01-268C23.b B6Ng01-268C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,010,251 - 10,010,533)(10,131,612 - 10,132,799)
sequence
tcttaaactggagcattgagccttcatgagacacagggcctcccctccca
ttgatgtagtacaaggcaatcctttactacatttgcagctggagccatgg
gtcactctatttgtactgtttggctggtggtttagtccctgggagctctg
gggaataggaagaataacaatatatacccatctcttcatatttgcgtatt
tgtgtgataatgatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatat

gaattcacagtcaaagggcagcactcaaaatctccctgcagtgatggaca
atgtaagatgagaaatggccgaacatttaaataacaaataaactttaaaa
tattgttaccttttcaggaaaaccataagaacccaatagttttccttcca
ctttttaaataaaatatactctgctgaagtgtaacaaccactacacagct
gaagcaacagaccagggttggtgaatacatagaccctatctgtgggtttc
ctctggctcccaaaagagcagccaatttacagatgtaacttaaatacgat
tccaagattatggctagttgagtcctgggatattgaatcacattttccct
gatagtttctttatcagggagatggaaactcagaaaacccaaatttatgc
agttgtgctacactaaattattcctcacaaaggtttcgctccagtcctct
gagacatctgaacaaacaaatggtaaaaacaagaatggcaataaaaattc
ctgcattactgcactataaattctgaagctatgtttccaaatgtgacaag
aaatattatgagcaattgcagatgcataaatggagcaagtgtaaaactcc
ttcctcagaggcgtcaataaaagaaaaaaagagtattataaagaactaca
aaataatttctttatccaaaagctctgaagcagttattaaaccagctgtt
tgcaagagtacacaaatctgctaagttgcagttgggtaactgttaaatgt
taaagcactgagtgatcaacgcctagcagatggtctgggaatgggtgagg
gaaatggcagtgttaataccgccaggctgagatgttcatttgtgctgtgg
tatgtgcagacggggtgaataatgaaaggttctgtaataattgtgtaaat
cccaacattattaaatcgattcagctggggtttcttaatatatgtgaagc
acttgatgtacttgggagaaaatacctctctttggctaaagctgttctca
ttaactcatactgctttatttgctgtgacctcggtgttctgtagtatgag
tgaataagaattaagaaagcactttcatctcagtattagaatgagggaaa
tgttaagaaaagtgttcaagccagaacattgcatgaattgccacggcgta
cttactattcaggttcagtaaggtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10010251_10010533
seq2: B6Ng01-268C23.b_46_329

seq1  GAATTCTCTTAAACTGGAGCATTGAGCCTTCATGAGACACAGGGCCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAACTGGAGCATTGAGCCTTCATGAGACACAGGGCCTCCC  50

seq1  CTCCCATTGATGTAGTACAAGGCAATCCTTTACTACATTTGCAGCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGATGTAGTACAAGGCAATCCTTTACTACATTTGCAGCTGGAG  100

seq1  CCATGGGTCACTCTATTTGTACTGTTTGGCTGGTGGTTTAGTCCCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTCACTCTATTTGTACTGTTTGGCTGGTGGTTTAGTCCCTGGGA  150

seq1  GCTCTGGGGAATAGGAAGAATAACAATATATACCCATCTCTTCATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGAATAGGAAGAATAACAATATATACCCATCTCTTCATATTTG  200

seq1  CGTATTTGTGTGATAATGATATATATATATATATATATATATATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTGTGTGATAATGATATATATATATATATATATATATATATATAT  250

seq1  ATATATATATATATATATATATATATAT-TATAT  283
      |||||||||||||||||||||||||||| |||||
seq2  ATATATATATATATATATATATATATATATATAT  284


seq1: chr6_10131612_10132799
seq2: B6Ng01-268C23.g_63_1240 (reverse)

seq1  GAGCA-CTAACTGAACCTGATAGGTAAATTAACGCCGTGGGCCAATCTAA  49
      ||||| || |||||||||||   |||| |  |||||||||  |||| | |
seq2  GAGCACCTTACTGAACCTGAATAGTAAGT--ACGCCGTGG--CAAT-TCA  45

seq1  TGCAATGTTCTGGCTTTGACACTTTTCTTAACATTTTCCCTCATTCCTAA  99
      ||||||||||||||||  ||||||||||||||| ||||||||||| ||||
seq2  TGCAATGTTCTGGCTTGAACACTTTTCTTAACA-TTTCCCTCATT-CTAA  93

seq1  TACTGAGATTGAAAGTGGCTTTC-TAATTCTTATTCCACTCATTACTTAA  148
      |||||||| ||||||| |||||| ||||||||||| |||||| ||||  |
seq2  TACTGAGA-TGAAAGT-GCTTTCTTAATTCTTATT-CACTCA-TACT--A  137

seq1  CAGGAACACCGAGGTCACAGCAAATAAAGCAGTATGAGTTAATGAGAACA  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GAACACCGAGGTCACAGCAAATAAAGCAGTATGAGTTAATGAGAACA  186

seq1  GCTTTAGCCAAAGAGGAGGTA-TTTCT-CCAAGTACATCAAGTGCTTCAC  246
      |||||||||||||| |||||| ||||| ||||||||||||||||||||||
seq2  GCTTTAGCCAAAGA-GAGGTATTTTCTCCCAAGTACATCAAGTGCTTCAC  235

seq1  ATATATTAAGAAACCCCAGCTGAATCGATTTAATAATGTTGGGATTTACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGAAACCCCAGCTGAATCGATTTAATAATGTTGGGATTTACA  285

seq1  CAATTATTACAGAACC-TTCATTATTCACCCCGTCTGCACATACCACAGC  345
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATTATTACAGAACCTTTCATTATTCACCCCGTCTGCACATACCACAGC  335

seq1  ACAAATGAACATCTCAGCCTGGCGGTATTAACACTGCCATTTCCCTCACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAACATCTCAGCCTGGCGGTATTAACACTGCCATTTCCCTCACC  385

seq1  CATTCCCAGACCATCTGCTAGGCGTTGATCACTCAGTGCTTTAACATTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAGACCATCTGCTAGGCGTTGATCACTCAGTGCTTTAACATTTA  435

seq1  ACAGTTACCCAACTGCAACTTAGCAGATTTGTGTACTCTTGCAAACAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACCCAACTGCAACTTAGCAGATTTGTGTACTCTTGCAAACAGCT  485

seq1  GGTTTAATAACTGCTTCAGAGCTTTTGGATAAAGAAATTATTTTGTAGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATAACTGCTTCAGAGCTTTTGGATAAAGAAATTATTTTGTAGTT  535

seq1  CTTTATAATACTCTTTTTTTCTTTTATTGACGCCTCTGAGGAAGGAGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAATACTCTTTTTTTCTTTTATTGACGCCTCTGAGGAAGGAGTTT  585

seq1  TACACTTGCTCCATTTATGCATCTGCAATTGCTCATAATATTTCTTGTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGCTCCATTTATGCATCTGCAATTGCTCATAATATTTCTTGTCA  635

seq1  CATTTGGAAACATAGCTTCAGAATTTATAGTGCAGTAATGCAGGAATTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAAACATAGCTTCAGAATTTATAGTGCAGTAATGCAGGAATTTT  685

seq1  TATTGCCATTCTTGTTTTTACCATTTGTTTGTTCAGATGTCTCAGAGGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCATTCTTGTTTTTACCATTTGTTTGTTCAGATGTCTCAGAGGAC  735

seq1  TGGAGCGAAACCTTTGTGAGGAATAATTTAGTGTAGCACAACTGCATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGAAACCTTTGTGAGGAATAATTTAGTGTAGCACAACTGCATAAA  785

seq1  TTTGGGTTTTCTGAGTTTCCATCTCCCTGATAAAGAAACTATCAGGGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTTCTGAGTTTCCATCTCCCTGATAAAGAAACTATCAGGGAAA  835

seq1  ATGTGATTCAATATCCCAGGACTCAACTAGCCATAATCTTGGAATCGTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTCAATATCCCAGGACTCAACTAGCCATAATCTTGGAATCGTAT  885

seq1  TTAAGTTACATCTGTAAATTGGCTGCTCTTTTGGGAGCCAGAGGAAACCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTACATCTGTAAATTGGCTGCTCTTTTGGGAGCCAGAGGAAACCC  935

seq1  ACAGATAGGGTCTATGTATTCACCAACCCTGGTCTGTTGCTTCAGCTGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGGGTCTATGTATTCACCAACCCTGGTCTGTTGCTTCAGCTGTG  985

seq1  TAGTGGTTGTTACACTTCAGCAGAGTATATTTTATTTAAAAAGTGGAAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTGTTACACTTCAGCAGAGTATATTTTATTTAAAAAGTGGAAGG  1035

seq1  AAAACTATTGGGTTCTTATGGTTTTCCTGAAAAGGTAACAATATTTTAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTGGGTTCTTATGGTTTTCCTGAAAAGGTAACAATATTTTAAA  1085

seq1  GTTTATTTGTTATTTAAATGTTCGGCCATTTCTCATCTTACATTGTCCAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTGTTATTTAAATGTTCGGCCATTTCTCATCTTACATTGTCCAT  1135

seq1  CACTGCAGGGAGATTTTGAGTGCTGCCCTTTGACTGTGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGGAGATTTTGAGTGCTGCCCTTTGACTGTGAATTC  1178


| Home | SequenceCutter | Blast | Download |