BAC Information

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BAC

Clone NameB6Ng01-268D02
Chromosome6 (Build37)
Map Location 14,103,924 - 14,272,751
singlet/doubletdoublet
Overlap geneLOC100040513
Upstream geneGm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268D02.bB6Ng01-268D02.g
ACCGA071114GA071115
length1,1771,155
definitionB6Ng01-268D02.b B6Ng01-268D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,103,924 - 14,105,106)(14,271,584 - 14,272,751)
sequence
gaattcaagattgattagtccaaatggaagaggtagattccatgaatagg
tgaggaaatgtagatatgaaaaaacttaagccaattgattattttagttc
tcaaaggctgttggtcttctactatagccaataatatcctacataagggt
ggctcagccatatacgtttgccttttctccatttcatgttctttttgctg
tcaaaataagagtaatcactacgacagaaatcagctcataactcttaatt
aaatcagaagaaaataataataatccttaattgatttaatgcaatctatc
aaatatttattcacaattagtagagaccaaaaaccaatgcatgcaaagta
aatgtgttccgtataagcaaactagagagaaaaaaaaacaaaggataata
ctaggactgagtagaatttgagtatagtcgttggtaggttagactataga
aagtgactaaagaaggatatacaatgcaatggaacaatcttgagacaaaa
tttaaatgaaagatgttgatgcataaatacatgaatagagagctcgtcag
gcagagagaactgtatgtgaagaggacttgaagcaagtgcatgctgggtg
tgttgccttaatgaggatgccaataagagtggagtgatgtaatcagtcat
taggagaactgaggttcattaaaccagtgaggtcctgagtggtagaattt
tgatgaccttggatttactttgaaaattatgggaggattggcgtacatga
actatgagtccatctgcctctctagaactagatagtgatggccaaaggat
gtggagaaaatagcctgcaggtaatgaatgaagatagagccagagactgg
taaatattgcaacaaactcctctaggcttttttccattaatgtatttatt
cactttatttccagatcacacagccgacccctttctcccattcccctacc
accacagaccctttcccatttccccctttttctttttctctgagagaggg
atgccctcttgcagatcacactaaactatcacttcagtcactgcaagagt
aggcatatctctactgtgaatcggaaagcgctcagtaggggattgggagc
cacagacaggttcacagatttaagggacagtccccactcaagttttgaga
ctctaggaagactgaatcgcacatctg

gaattcagcagctgaaggtggactctctaaggcatgaatcctttgtgagg
acactttatctccttaactatatatatgcaaaaaattaaaatcatataaa
tattttcaggtaaaatatagctatattggctatatatatagttatatagt
tactttatacttattagctaggattagtatttttggacatgtctcagcac
atcttcattgcacagttccgtagtaatgaacattacattctgtttataac
ctaatgttatgaatgttataacgtctgtatctatctatatggaacatggg
tattttatgccttctcacagatcattagaaagatgcctatggaccatata
agacttttccttactacctactccagatggagggctggtaatacaattgt
tttagcctcaaaatgattttaagtgaaccgcactattagacactaaaagc
tacatgggaaatttacccttcctcacctaggttgcatagattctccaaga
tttcctttgaataaaaacaagttgactattgaaaacatagatttctgcaa
gtggacagggaaatattcttgaacaaagtgaagctgttaatatatgcctc
ttcattttagtgttttactctgagttcagagaaacttgtgtcctaattcg
taggactgacaaaaaaatattaaacttccttgaaaaatcagatgtttgat
aggcaggtgttggaaagtaggaaacttctgtctgtaggtcaagttaagaa
atgcatatagtcactgttcactatgattaaatttcttccatgaacatgcc
caagagaacagaggtgaggcaaatctttatccacagcctaaggatttata
ctcagtcttttatattacttctagtaaaaggttgttatattcaacacaga
gttttaaaaagagaacataaaaaggacacagtaactgaagagcagcctgg
acagggtccctccagtttccatctgcacctggagcagaccctgtgccata
gctctcataccctggtctgactgggagaaagcaagattctagagtgctaa
cacactagtgagaacaggtagactacacttctgctccaaaggacccctct
ggagctttcagacacagaacttattgacagtctgatggattttcagtttc
aattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14103924_14105106
seq2: B6Ng01-268D02.b_48_1224

seq1  GAATTCAAGATTGATTAGTCCAAATGGAAGAGGTAGATTCCATGAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATTGATTAGTCCAAATGGAAGAGGTAGATTCCATGAATAGG  50

seq1  TGAGGAAATGTAGATATGAAAAAACTTAAGCCAATTGATTATTTTAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAATGTAGATATGAAAAAACTTAAGCCAATTGATTATTTTAGTTC  100

seq1  TCAAAGGCTGTTGGTCTTCTACTATAGCCAATAATATCCTACATAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCTGTTGGTCTTCTACTATAGCCAATAATATCCTACATAAGGGT  150

seq1  GGCTCAGCCATATACGTTTGCCTTTTCTCCATTTCATGTTCTTTTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCCATATACGTTTGCCTTTTCTCCATTTCATGTTCTTTTTGCTG  200

seq1  TCAAAATAAGAGTAATCACTACGACAGAAATCAGCTCATAACTCTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAGAGTAATCACTACGACAGAAATCAGCTCATAACTCTTAATT  250

seq1  AAATCAGAAGAAAATAATAATAATCCTTAATTGATTTAATGCAATCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAGAAAATAATAATAATCCTTAATTGATTTAATGCAATCTATC  300

seq1  AAATATTTATTCACAATTAGTAGAGACCAAAAACCAATGCATGCAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATTCACAATTAGTAGAGACCAAAAACCAATGCATGCAAAGTA  350

seq1  AATGTGTTCCGTATAAGCAAACTAGAGAGAAAAAAAAACAAAGGATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTCCGTATAAGCAAACTAGAGAGAAAAAAAAACAAAGGATAATA  400

seq1  CTAGGACTGAGTAGAATTTGAGTATAGTCGTTGGTAGGTTAGACTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTGAGTAGAATTTGAGTATAGTCGTTGGTAGGTTAGACTATAGA  450

seq1  AAGTGACTAAAGAAGGATATACAATGCAATGGAACAATCTTGAGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTAAAGAAGGATATACAATGCAATGGAACAATCTTGAGACAAAA  500

seq1  TTTAAATGAAAGATGTTGATGCATAAATACATGAATAGAGAGCTCGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAAAGATGTTGATGCATAAATACATGAATAGAGAGCTCGTCAG  550

seq1  GCAGAGAGAACTGTATGTGAAGAGGACTTGAAGCAAGTGCATGCTGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAACTGTATGTGAAGAGGACTTGAAGCAAGTGCATGCTGGGTG  600

seq1  TGTTGCCTTAATGAGGATGCCAATAAGAGTGGAGTGATGTAATCAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTAATGAGGATGCCAATAAGAGTGGAGTGATGTAATCAGTCAT  650

seq1  TAGGAGAACTGAGGTTCATTAAACCAGTGAGGTCCTGAGTGGTAGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAACTGAGGTTCATTAAACCAGTGAGGTCCTGAGTGGTAGAATTT  700

seq1  TGATGACCTTGGATTTACTTTGAAAATTATGGGAGGATTGGCGTACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCTTGGATTTACTTTGAAAATTATGGGAGGATTGGCGTACATGA  750

seq1  ACTATGAGTCCATCTGCCTCTCTAGAACTAGATAGTGATGGCCAAAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAGTCCATCTGCCTCTCTAGAACTAGATAGTGATGGCCAAAGGAT  800

seq1  GTGGAGAAAATAGCCTGCAGGTAATGAATGAAGATAGAGCCAGAGACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAAATAGCCTGCAGGTAATGAATGAAGATAGAGCCAGAGACTGG  850

seq1  TAAATATTGCAACAAACTCCTCTAGGCTTTTTTCCATTAATGTATTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTGCAACAAACTCCTCTAGGCTTTTTTCCATTAATGTATTTATT  900

seq1  CACTTTATTTCCAGATCACACAGCCGACCCC-TTCTCCCATTCCCCTACC  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACTTTATTTCCAGATCACACAGCCGACCCCTTTCTCCCATTCCCCTACC  950

seq1  ACCACAGACCC-TTCCCATTTCCCCC-TTTTCTTTTTCTCTGAGAAGAGG  997
      ||||||||||| |||||||||||||| ||||||||||||||||| |||||
seq2  ACCACAGACCCTTTCCCATTTCCCCCTTTTTCTTTTTCTCTGAG-AGAGG  999

seq1  GATGCCCTCCTGCAGATCACACTAACCTATCACTTCAAGTCACTGCAAGA  1047
      ||||||||| ||||||||||||||| |||||||||| |||||||||||||
seq2  GATGCCCTCTTGCAGATCACACTAAACTATCACTTC-AGTCACTGCAAGA  1048

seq1  GTAGGCATATCCTCTTACTGTG-ATCGGAAAAGGCGGCTCAGTTAGGGGA  1096
      |||||||||| ||| ||||||| ||||||||  || |||||| |||||||
seq2  GTAGGCATAT-CTC-TACTGTGAATCGGAAA--GC-GCTCAG-TAGGGGA  1092

seq1  ATGGGAGCCACAGACAGG-TCACAGATTT-AGGGACAGTCCCCACTCAAG  1144
       ||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TTGGGAGCCACAGACAGGTTCACAGATTTAAGGGACAGTCCCCACTCAAG  1142

seq1  TTTTTGGAGGACTCTCAGGAAGACTGAGCCGCACATCTG  1183
      ||||  || |||||| |||||||||||  ||||||||||
seq2  TTTT--GA-GACTCT-AGGAAGACTGAATCGCACATCTG  1177


seq1: chr6_14271584_14272751
seq2: B6Ng01-268D02.g_69_1223 (reverse)

seq1  CAATTGGAAACTGGAAAAATTCCATTCCAGACTGCTCATTAGTTCCTGTG  50
      ||||| |||||||   ||| |||||  ||||||| ||| ||  | |||||
seq2  CAATT-GAAACTG---AAAATCCAT--CAGACTG-TCAATAAGTTCTGTG  43

seq1  TCCTGAAGGCTCCAGAGGGGTCC-TTGGAGCAGAAGTGGTAGTTCTACCT  99
      | ||||| ||||||||||||||| ||||||||||||| |||| |||||||
seq2  T-CTGAAAGCTCCAGAGGGGTCCTTTGGAGCAGAAGT-GTAG-TCTACCT  90

seq1  GTTCTCACTAGTGTGTTAGCACTCCTAGGAATCTTGCTTTCTCCCAGTCA  149
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  GTTCTCACTAGTGTGTTAGCACT-CTA-GAATCTTGCTTTCTCCCAGTCA  138

seq1  GACCAGGGTATGGAGAGCTATGGCACAGGGTCTGCTCCAGGTGCAGATGG  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGTAT-GAGAGCTATGGCACAGGGTCTGCTCCAGGTGCAGATGG  187

seq1  AAACTGGAGGGACCCTGTCCCAGGCTGCTCTTCAGTTACTGTGTCCTTTT  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAACTGGAGGGACCCTGT-CCAGGCTGCTCTTCAGTTACTGTGTCCTTTT  236

seq1  TATGTTCTCTTTTTAAAACTCTGTGTTGAATATAACAACCTTTTACTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTCTTTTTAAAACTCTGTGTTGAATATAACAACCTTTTACTAGA  286

seq1  AGTAATATAAAAGACTGAGTATAAATCCTTAGGCTGTGGATAAAGATTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATAAAAGACTGAGTATAAATCCTTAGGCTGTGGATAAAGATTTG  336

seq1  CCTCACCTCTGTTCTCTTGGGCATGTTCATGGAAGAAATTTAATCATAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTCTGTTCTCTTGGGCATGTTCATGGAAGAAATTTAATCATAGT  386

seq1  GAACAGTGACTATATGCATTTCTTAACTTGACCTACAGACAGAAGTTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGACTATATGCATTTCTTAACTTGACCTACAGACAGAAGTTTCC  436

seq1  TACTTTCCAACACCTGCCTATCAAACATCTGATTTTTCAAGGAAGTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCAACACCTGCCTATCAAACATCTGATTTTTCAAGGAAGTTTAA  486

seq1  TATTTTTTTGTCAGTCCTACGAATTAGGACACAAGTTTCTCTGAACTCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTGTCAGTCCTACGAATTAGGACACAAGTTTCTCTGAACTCAG  536

seq1  AGTAAAACACTAAAATGAAGAGGCATATATTAACAGCTTCACTTTGTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACACTAAAATGAAGAGGCATATATTAACAGCTTCACTTTGTTCA  586

seq1  AGAATATTTCCCTGTCCACTTGCAGAAATCTATGTTTTCAATAGTCAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTCCCTGTCCACTTGCAGAAATCTATGTTTTCAATAGTCAACT  636

seq1  TGTTTTTATTCAAAGGAAATCTTGGAGAATCTATGCAACCTAGGTGAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTCAAAGGAAATCTTGGAGAATCTATGCAACCTAGGTGAGGA  686

seq1  AGGGTAAATTTCCCATGTAGCTTTTAGTGTCTAATAGTGCGGTTCACTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAATTTCCCATGTAGCTTTTAGTGTCTAATAGTGCGGTTCACTTA  736

seq1  AAATCATTTTGAGGCTAAAACAATTGTATTACCAGCCCTCCATCTGGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTTGAGGCTAAAACAATTGTATTACCAGCCCTCCATCTGGAGT  786

seq1  AGGTAGTAAGGAAAAGTCTTATATGGTCCATAGGCATCTTTCTAATGATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTAAGGAAAAGTCTTATATGGTCCATAGGCATCTTTCTAATGATC  836

seq1  TGTGAGAAGGCATAAAATACCCATGTTCCATATAGATAGATACAGACGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGGCATAAAATACCCATGTTCCATATAGATAGATACAGACGTT  886

seq1  ATAACATTCATAACATTAGGTTATAAACAGAATGTAATGTTCATTACTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTCATAACATTAGGTTATAAACAGAATGTAATGTTCATTACTAC  936

seq1  GGAACTGTGCAATGAAGATGTGCTGAGACATGTCCAAAAATACTAATCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTGCAATGAAGATGTGCTGAGACATGTCCAAAAATACTAATCCT  986

seq1  AGCTAATAAGTATAAAGTAACTATATAACTATATATATAGCCAATATAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAAGTATAAAGTAACTATATAACTATATATATAGCCAATATAGC  1036

seq1  TATATTTTACCTGAAAATATTTATATGATTTTAATTTTTTGCATATATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTACCTGAAAATATTTATATGATTTTAATTTTTTGCATATATAT  1086

seq1  AGTTAAGGAGATAAAGTGTCCTCACAAAGGATTCATGCCTTAGAGAGTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGAGATAAAGTGTCCTCACAAAGGATTCATGCCTTAGAGAGTCC  1136

seq1  ACCTTCAGCTGCTGAATTC  1168
      |||||||||||||||||||
seq2  ACCTTCAGCTGCTGAATTC  1155


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