BAC Information

Click to search

BAC

Clone NameB6Ng01-268G13
Chromosome6 (Build37)
Map Location 134,963,924 - 135,004,259
singlet/doubletdoublet
Overlap geneDdx47
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1
Downstream geneGprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268G13.bB6Ng01-268G13.g
ACCGA071271GA071272
length1,1571,121
definitionB6Ng01-268G13.b B6Ng01-268G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,963,924 - 134,965,076)(135,003,110 - 135,004,259)
sequence
gaattcagggcttttgtgtgaatgggaggaacgaggttatgaagatgctc
atgggtcacgagtagttttggcaaccaggggtatttcatgccgccattct
ttaggaagatgagctgaaggcctgctggcataagtatatcctgtgtagct
tgtagctctcgctctctctctctgaacctgaagttctctgtatccagaat
cattaacttcctcccagaactgatttttctatagttcctgtctccgtttt
tggcttttcagtttcccatactaaaattgatgtcacccaccacgttcctt
tcaaccagtttttgttcgcttttacttttgagatgggtccttgctgtgct
gtccaggctggcttcaaacgcctaggcctgagtgctcctctttctctgag
cctcccatgtaggtgggactacagctgtgcaccatcacgtggaccgttca
gctccttgcctcctctgggtttatcttcgagaagaataacaccacctgtg
aaattccctgtttatcaggatccattaggggtttatgagccccttcctag
cctcattcctacctgtttaataccctgccattcagcccaggtggggcttc
acatagccccgtcatacactgtttcttagagccccggccctctgtcctca
tgcaggaatagctgtcctgccttttgcttacttccatgtagaatttgtag
atctctgttagcctggcattcccctttatgtactttttatcttttctagg
ggcctgtattaagggccttacctaattaaacatgtgtgttggtaagatcg
ctcagtggttaaaggctcttactgctgagtttgatttctgggacccacat
ggtagaagtagagaacggagtcctacacgttgtcttctgacttgccacag
ttatacatggaaaaacacacacacacagaccacataaaacaattttagaa
ttagaaattagccttaagttaaacttttttgttttgttttgagacagggt
ttctcggtgtagccttggcttatccttgaactcaactccgtagatcaggc
tgtctggacttagagattgcctgccttctgcctcctgggtggctgagaat
aaaggcacaaggcctaccttctgactgttactgaatttagctaatataag
ggtgagg
gaattccagaaacacagccaacaggagtgagttgtcatcccaggggggat
agcaacagagggcccttctctgtttcccagaccctgggcaacttttgagt
ctggttctgtcccctagaggtgacccacttgcaccagtggacacaggatg
gcatctggttggctaattccaagaacaacacagacccaaggcagagtgaa
attcctgtggagactctaggcaggtgaagcagctcaggcaccttccagga
caccctgcagtggccccgcccaagccgccctgtcccaggcaggcaggcag
cagaacaaggatactatgggttctgaactcacttgcttcccagccttttc
ctcatttctcttgtggtaccccaactaaaagagttcttttaagaagtcag
cgggtgtggccttgggaggagtcagtataaacagaggcccacaaagaagc
tctgaaaagagaaggcttccgaatccaaacagcagaaggccaagataaat
acgagaccctgggtactcccagcctggctgtggttcccataataagtggt
cccctgagaaagaactcaggagctgacacctatgggaatctcacttccca
ttacagacaaggaaaggtgtctcccacaaaacagcagagctactacagct
gctgacagaaaggcgggtgtgggcacttgcacaaacgtatatgcatgcat
acttataaataaaatatttatataacatacatacaataacaaacaaaact
agttgtggtggcacataccttgaaatcacagcacttgggagacagataca
ggtggaaaaagtaatgcattatagctgtcagacgcaagctggagcgtttg
ggttggtgtagctatctctgtctgtctgtctgtctgatttttgagatgag
gtcttaccaaatagccttgactggcccagaatgtgctacgtagatcagac
tggtctcgaacttgtaaaaatccttctgcctcagccacctagtattgaaa
tatagccctatacctttttctgttgtgttggtgatatacattattattat
tactactactactattacctactacttttgtttcttttcttttgcttgct
tgacagtctctctacatagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134963924_134965076
seq2: B6Ng01-268G13.b_48_1203

seq1  AATTCAGGGCTTTTGTGTGAATGGGAGGAACGAGGTTATGAAGATGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGGCTTTTGTGTGAATGGGAGGAACGAGGTTATGAAGATGCTCA  50

seq1  TGGGTCACGAGTAGTTTTGGCAACCAGGGGTATTTCATGCCGCCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACGAGTAGTTTTGGCAACCAGGGGTATTTCATGCCGCCATTCTT  100

seq1  TAGGAAGATGAGCTGAAGGCCTGCTGGCATAAGTATATCCTGTGTAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGATGAGCTGAAGGCCTGCTGGCATAAGTATATCCTGTGTAGCTT  150

seq1  GTAGCTCTCGCTCTCTCTCTCTGAACCTGAAGTTCTCTGTATCCAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTCGCTCTCTCTCTCTGAACCTGAAGTTCTCTGTATCCAGAATC  200

seq1  ATTAACTTCCTCCCAGAACTGATTTTTCTATAGTTCCTGTCTCCGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTCCTCCCAGAACTGATTTTTCTATAGTTCCTGTCTCCGTTTTT  250

seq1  GGCTTTTCAGTTTCCCATACTAAAATTGATGTCACCCACCACGTTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAGTTTCCCATACTAAAATTGATGTCACCCACCACGTTCCTTT  300

seq1  CAACCAGTTTTTGTTCGCTTTTACTTTTGAGATGGGTCCTTGCTGTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGTTTTTGTTCGCTTTTACTTTTGAGATGGGTCCTTGCTGTGCTG  350

seq1  TCCAGGCTGGCTTCAAACGCCTAGGCCTGAGTGCTCCTCTTTCTCTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTGGCTTCAAACGCCTAGGCCTGAGTGCTCCTCTTTCTCTGAGC  400

seq1  CTCCCATGTAGGTGGGACTACAGCTGTGCACCATCACGTGGACCGTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGTAGGTGGGACTACAGCTGTGCACCATCACGTGGACCGTTCAG  450

seq1  CTCCTTGCCTCCTCTGGGTTTATCTTCGAGAAGAATAACACCACCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCCTCCTCTGGGTTTATCTTCGAGAAGAATAACACCACCTGTGA  500

seq1  AATTCCCTGTTTATCAGGATCCATTAGGGGTTTATGAGCCCCTTCCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTGTTTATCAGGATCCATTAGGGGTTTATGAGCCCCTTCCTAGC  550

seq1  CTCATTCCTACCTGTTTAATACCCTGCCATTCAGCCCAGGTGGGGCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCTACCTGTTTAATACCCTGCCATTCAGCCCAGGTGGGGCTTCA  600

seq1  CATAGCCCCGTCATACACTGTTTCTTAGAGCCCCGGCCCTCTGTCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCCGTCATACACTGTTTCTTAGAGCCCCGGCCCTCTGTCCTCAT  650

seq1  GCAGGAATAGCTGTCCTGCCTTTTGCTTACTTCCATGTAGAATTTGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATAGCTGTCCTGCCTTTTGCTTACTTCCATGTAGAATTTGTAGA  700

seq1  TCTCTGTTAGCCTGGCATTCCCCTTTATGTACTTTTTATCTTTTCTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTAGCCTGGCATTCCCCTTTATGTACTTTTTATCTTTTCTAGGG  750

seq1  GCCTGTATTAAGGGCCTTACCTAATTAAACATGTGTGTTGGTAAGATCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATTAAGGGCCTTACCTAATTAAACATGTGTGTTGGTAAGATCGC  800

seq1  TCAGTGGTTAAAGGCTCTTACTGCTGAGTTTGATTTCTGGGACCCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTAAAGGCTCTTACTGCTGAGTTTGATTTCTGGGACCCACATG  850

seq1  GTAGAAGTAGAGAACGGAGTCCTACACGTTGTCTTCTGACTTGCCACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTAGAGAACGGAGTCCTACACGTTGTCTTCTGACTTGCCACAGT  900

seq1  TATACATGGAAAAACACACACACACAGACCACATAAAACAATTTTAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGGAAAAACACACACACACAGACCACATAAAACAATTTTAGAAT  950

seq1  TAGAAATTAGCCTTAAGTTAAACTTTTTTGTTTTGTTTTGAGACAGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAGCCTTAAGTTAAACTTTTTTGTTTTGTTTTGAGACAGGGTT  1000

seq1  TCTCGGTGTAGCCTTGGC-TATCCTTGAACTC-ACTCCGTAGATCAGGCT  1048
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TCTCGGTGTAGCCTTGGCTTATCCTTGAACTCAACTCCGTAGATCAGGCT  1050

seq1  GTCCTTGAACTTAGAGATTGCCTGCC-TCTGCCTCCTGAGT-GCTGAGAT  1096
      |||  || |||||||||||||||||| ||||||||||| || ||||||| 
seq2  GTC--TGGACTTAGAGATTGCCTGCCTTCTGCCTCCTGGGTGGCTGAGAA  1098

seq1  TAAAGGCACA--GGCTACCTCTGGCCTGTTACTGAATTTTAGCTAATATA  1144
      ||||||||||  | ||||||   | ||||||||||| |||||||||||||
seq2  TAAAGGCACAAGGCCTACCTTCTGACTGTTACTGAA-TTTAGCTAATATA  1147

seq1  GGGTAGAGG  1153
       ||  ||||
seq2  AGGGTGAGG  1156

seq1: chr6_135003110_135004259
seq2: B6Ng01-268G13.g_66_1186 (reverse)

seq1  GGCTATGTAGAGAGACATTGTTTCAAAGCAAAACAAAAAAGAAAAAGAAA  50
      ||||||||||||||||  |||            |||  ||| ||||||||
seq2  GGCTATGTAGAGAGAC--TGT------------CAAGCAAGCAAAAGAAA  36

seq1  ACAAA-AAAAGTAAGTAAGTAAATAAGTAAGTAAGTAAGTAAATAAATAA  99
      | ||| |||||| |||| ||||   ||| ||| ||| |||||   |||||
seq2  AGAAACAAAAGT-AGTAGGTAA--TAGT-AGT-AGT-AGTAA--TAATAA  78

seq1  ATAAATGTAATTATCAACAACAACAACAAGAAAAAGGTATAGGGCTATAA  149
         ||||||  ||||| |||| ||||| |||||||||||||||||||| |
seq2  --TAATGTA--TATCACCAAC-ACAAC-AGAAAAAGGTATAGGGCTAT-A  121

seq1  TTTCAATACTAGGGTGGCTGAGGCAGAAGGATTTTTACAAGTTCGAGACC  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATACTA-GGTGGCTGAGGCAGAAGGATTTTTACAAGTTCGAGACC  170

seq1  AGTCTGATCTACGTAGCACATTCTGGGCCAGTCAAGGCTATTTGGTAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATCTACGTAGCACATTCTGGGCCAGTCAAGGCTATTTGGTAAGA  220

seq1  CCTCATCTCAAAAATCAGACAGACAGACAGACAGAGATAGCTACACCAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCAAAAATCAGACAGACAGACAGACAGAGATAGCTACACCAAC  270

seq1  CCAAACGCTCCAGCTTGCGTCTGACAGCTATAATGCATTACTTTTTCCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGCTCCAGCTTGCGTCTGACAGCTATAATGCATTACTTTTTCCAC  320

seq1  CTGTATCTGTCTCCCAAGTGCTGTGATTTCAAGGTATGTGCCACCACAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTGTCTCCCAAGTGCTGTGATTTCAAGGTATGTGCCACCACAAC  370

seq1  TAGTTTTGTTTGTTATTGTATGTATGTTATATAAATATTTTATTTATAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGTTTGTTATTGTATGTATGTTATATAAATATTTTATTTATAAG  420

seq1  TATGCATGCATATACGTTTGTGCAAGTGCCCACACCCGCCTTTCTGTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGCATATACGTTTGTGCAAGTGCCCACACCCGCCTTTCTGTCAG  470

seq1  CAGCTGTAGTAGCTCTGCTGTTTTGTGGGAGACACCTTTCCTTGTCTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAGTAGCTCTGCTGTTTTGTGGGAGACACCTTTCCTTGTCTGTA  520

seq1  ATGGGAAGTGAGATTCCCATAGGTGTCAGCTCCTGAGTTCTTTCTCAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGTGAGATTCCCATAGGTGTCAGCTCCTGAGTTCTTTCTCAGGG  570

seq1  GACCACTTATTATGGGAACCACAGCCAGGCTGGGAGTACCCAGGGTCTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTATTATGGGAACCACAGCCAGGCTGGGAGTACCCAGGGTCTCG  620

seq1  TATTTATCTTGGCCTTCTGCTGTTTGGATTCGGAAGCCTTCTCTTTTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTTGGCCTTCTGCTGTTTGGATTCGGAAGCCTTCTCTTTTCAG  670

seq1  AGCTTCTTTGTGGGCCTCTGTTTATACTGACTCCTCCCAAGGCCACACCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTGTGGGCCTCTGTTTATACTGACTCCTCCCAAGGCCACACCC  720

seq1  GCTGACTTCTTAAAAGAACTCTTTTAGTTGGGGTACCACAAGAGAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTCTTAAAAGAACTCTTTTAGTTGGGGTACCACAAGAGAAATGA  770

seq1  GGAAAAGGCTGGGAAGCAAGTGAGTTCAGAACCCATAGTATCCTTGTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCTGGGAAGCAAGTGAGTTCAGAACCCATAGTATCCTTGTTCT  820

seq1  GCTGCCTGCCTGCCTGGGACAGGGCGGCTTGGGCGGGGCCACTGCAGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGCCTGCCTGGGACAGGGCGGCTTGGGCGGGGCCACTGCAGGGT  870

seq1  GTCCTGGAAGGTGCCTGAGCTGCTTCACCTGCCTAGAGTCTCCACAGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAAGGTGCCTGAGCTGCTTCACCTGCCTAGAGTCTCCACAGGAA  920

seq1  TTTCACTCTGCCTTGGGTCTGTGTTGTTCTTGGAATTAGCCAACCAGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTGCCTTGGGTCTGTGTTGTTCTTGGAATTAGCCAACCAGATG  970

seq1  CCATCCTGTGTCCACTGGTGCAAGTGGGTCACCTCTAGGGGACAGAACCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGTGTCCACTGGTGCAAGTGGGTCACCTCTAGGGGACAGAACCA  1020

seq1  GACTCAAAAGTTGCCCAGGGTCTGGGAAACAGAGAAGGGCCCTCTGTTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAAGTTGCCCAGGGTCTGGGAAACAGAGAAGGGCCCTCTGTTGC  1070

seq1  TATCCCCCCTGGGATGACAACTCACTCCTGTTGGCTGTGTTTCTGGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCCCTGGGATGACAACTCACTCCTGTTGGCTGTGTTTCTGGAATT  1120

seq1  C  1150
      |
seq2  C  1121