BAC Information

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BAC

Clone NameB6Ng01-268I12
Chromosome6 (Build37)
Map Location 94,191,787 - 94,303,162
singlet/doubletdoublet
Overlap geneMagi1, LOC100043262
Upstream geneLOC100043253, LOC665831
Downstream geneLOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268I12.bB6Ng01-268I12.g
ACCGA071363GA071364
length1,1171,142
definitionB6Ng01-268I12.b B6Ng01-268I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,191,787 - 94,192,903)(94,302,017 - 94,303,162)
sequence
gaattcaaaccatcgtcaagtttttgaaggtgacagaatgagaagttaca
tcccttaagcccacaagtttaaccacctcacggacttatctcttgtaccg
agcacgcacagataaccccagcactttgatgcctgcttgtcttactcagg
catccatttctagaatattcagcgtctacctaagtctgttttctaggcat
tcggggaaaaggcacgtgcagtcaaatgtctgtgcaccgattatacagga
tattttccccttcaaaaaaaaaaaaaaaagtaattaaaattctaagaatt
ccagccctgccccatacaaatgaagactagaatctagaccccaccactca
aaagctagaaaaacttaagaaaccactgaactctgacctccagtctccct
acctctaatatggggataattataacagccaagtaactaccataaagtat
ctaggaatatcggaaacacatgccatcacatgtgtccagcactttaccaa
agaaagggacacaggaaactctcaatgactgccactccgattatagcttg
tctttttatactgcacctaaccctaaattaacagtgtgacacttcatctt
ttttaaagtctcataattctaccccactgaagcctaactgaatttaaaat
atacaccaaaaactaaaaaggagatacaggcacagctgccaagtggcaag
taagaagctgtaattttccatcattggaatatatttagtgataactataa
atgaaaaactaagagagaaaaaaaaatagcccctgcttccaagcactcgt
ccagtctgacagcctgaagaacacaacacgaagctggacttgtagttcca
ctggccctgctccttcctcccatctgtaacgaacagccacatccctgggg
ctgcaccaggaactctctgcgaggtgaagataccttgcagctgcagggaa
cagctgtaatggtactggcccccaatcagggtaagccatccaatgactgg
tatgtgctcggtttaacaagcagagcttgctattgctgagcacggcgaca
aatgacatcatctctacacacctgactggtgtggtccactgtcatttttc
tcagagctgaaaaggaa

gaattcaaggacttccttagctaccaatggagtttgacaccagctcaagc
tacatgagactttgtctctgaataagtaagtaagcaaaatgaatggatga
atgaatgaataaataaataaatgaaatctttttaaaaaaagaacctacct
gtcattccaacacaatgtagaaactagccacctgttactctaactattct
tttgttttagcaataatcctcttaccaatctgctccctcctcagtacggt
ggccatgattattcttaaaccggaaattacttttcatctggctatggcca
atgagcttgatgcatggacaagaccctccatcactgaaacagtgcagaag
ctcattaagcaattcatcacagtctttattaaaccttagagaggctttaa
tttttccttgtgcctcagaaaaaaaaaaaaatcccagaattactgaatgt
ctggataatgaaagtcagatagagcctttcaattccagcgattacacaaa
ctacaagaaaccatgggattctacaaatgatctggccaggataacatagc
tgtgagccaggcctcacaattttaaattccttctaattcagcatgccacg
tggtgggaggagaatgagaattttatcgtagagtgtatagtgctacatac
tggcagtctggacactcaagaagcagaggctgggggaatttgagtttcag
gtttttctgagccacagagagtaaccctgtctcaaaataaaataaagtaa
aattaaaacaaaacaaaattaaaaggtatttcctatgtagcatataataa
tactccaaaatatgctaagtttttattttgggaggctgggatttttgttt
tgttttgttttgttgttttactctttttagttgtcctgtttgtttgtttg
tttgtttcaagcaggttttctctttttaggcctgactgtcctagaacttg
ctttgtagaccaggctggcctcgaactcagagatctgcctgccttctgca
tcccttagtgctagaaccaaagcatgtaccactaccaccaagagtgctag
tagatgccactagttgagttgatttggataagttaataggacgatacaaa
tttatttttctctactgctatcttaacctttaatgctaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94191787_94192903
seq2: B6Ng01-268I12.b_49_1165

seq1  GAATTCAAACCATCGTCAAGTTTTTGAAGGTGACAGAATGAGAAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCATCGTCAAGTTTTTGAAGGTGACAGAATGAGAAGTTACA  50

seq1  TCCCTTAAGCCCACAAGTTTAACCACCTCACGGACTTATCTCTTGTACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAGCCCACAAGTTTAACCACCTCACGGACTTATCTCTTGTACCG  100

seq1  AGCACGCACAGATAACCCCAGCACTTTGATGCCTGCTTGTCTTACTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCACAGATAACCCCAGCACTTTGATGCCTGCTTGTCTTACTCAGG  150

seq1  CATCCATTTCTAGAATATTCAGCGTCTACCTAAGTCTGTTTTCTAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTTCTAGAATATTCAGCGTCTACCTAAGTCTGTTTTCTAGGCAT  200

seq1  TCGGGGAAAAGGCACGTGCAGTCAAATGTCTGTGCACCGATTATACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGAAAAGGCACGTGCAGTCAAATGTCTGTGCACCGATTATACAGGA  250

seq1  TATTTTCCCCTTCAAAAAAAAAAAAAAAAGTAATTAAAATTCTAAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCCTTCAAAAAAAAAAAAAAAAGTAATTAAAATTCTAAGAATT  300

seq1  CCAGCCCTGCCCCATACAAATGAAGACTAGAATCTAGACCCCACCACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGCCCCATACAAATGAAGACTAGAATCTAGACCCCACCACTCA  350

seq1  AAAGCTAGAAAAACTTAAGAAACCACTGAACTCTGACCTCCAGTCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGAAAAACTTAAGAAACCACTGAACTCTGACCTCCAGTCTCCCT  400

seq1  ACCTCTAATATGGGGATAATTATAACAGCCAAGTAACTACCATAAAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAATATGGGGATAATTATAACAGCCAAGTAACTACCATAAAGTAT  450

seq1  CTAGGAATATCGGAAACACATGCCATCACATGTGTCCAGCACTTTACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATATCGGAAACACATGCCATCACATGTGTCCAGCACTTTACCAA  500

seq1  AGAAAGGGACACAGGAAACTCTCAATGACTGCCACTCCGATTATAGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGACACAGGAAACTCTCAATGACTGCCACTCCGATTATAGCTTG  550

seq1  TCTTTTTATACTGCACCTAACCCTAAATTAACAGTGTGACACTTCATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATACTGCACCTAACCCTAAATTAACAGTGTGACACTTCATCTT  600

seq1  TTTTAAAGTCTCATAATTCTACCCCACTGAAGCCTAACTGAATTTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTCTCATAATTCTACCCCACTGAAGCCTAACTGAATTTAAAAT  650

seq1  ATACACCAAAAACTAAAAAGGAGATACAGGCACAGCTGCCAAGTGGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAAAAACTAAAAAGGAGATACAGGCACAGCTGCCAAGTGGCAAG  700

seq1  TAAGAAGCTGTAATTTTCCATCATTGGAATATATTTAGTGATAACTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTGTAATTTTCCATCATTGGAATATATTTAGTGATAACTATAA  750

seq1  ATGAAAAACTAAGAGAGAAAAAAAAATAGCCCCTGCTTCCAAGCACTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAACTAAGAGAGAAAAAAAAATAGCCCCTGCTTCCAAGCACTCGT  800

seq1  CCAGTCTGACAGCCTGAAGAACACAACACGAAGCTGGACTTGTAGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGACAGCCTGAAGAACACAACACGAAGCTGGACTTGTAGTTCCA  850

seq1  CTGGCCCTGCTCCTTCCTCCCATCTGTAACGAACAGCCACATCCCTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTGCTCCTTCCTCCCATCTGTAACGAACAGCCACATCCCTGGGG  900

seq1  CTGCACCAGGAACTCTCTGCGAGGTGAAGATACCTTGCAGCTGCAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGGAACTCTCTGCGAGGTGAAGATACCTTGCAGCTGCAGGGAA  950

seq1  CAGCTGTAATGGTACTGGCCCCCAATCAGGGTAAGCCATCCAATGACTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAATGGTACTGGCCCCCAATCAGGGTAAGCCATCCAATGACTGG  1000

seq1  TATGTGCTCGGTTTAACAAGCAGAGCTTGCTATTGCTGAGCACGGCGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTCGGTTTAACAAGCAGAGCTTGCTATTGCTGAGCACGGCGACA  1050

seq1  AATGACATCATCTCTACACACCTGACTGGTGTGGTCCACTGTCAATTTTC  1100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATGACATCATCTCTACACACCTGACTGGTGTGGTCCACTGTCATTTTTC  1100

seq1  TCAGAGCTGAAAAGGAA  1117
      |||||||||||||||||
seq2  TCAGAGCTGAAAAGGAA  1117


seq1: chr6_94302017_94303162
seq2: B6Ng01-268I12.g_66_1207 (reverse)

seq1  AAATATAGCAATAAAGGTTTAAAGATAGCAGTAGAG-AAAATAAATTTGT  49
      |||| ||||| ||||||||  ||||||||||||||| |||||||||||||
seq2  AAAT-TAGCATTAAAGGTT--AAGATAGCAGTAGAGAAAAATAAATTTGT  47

seq1  ATCCTTCTATAACTTTATCAAATCCAACTCAACTAGTTGGCATCTTACTA  99
      ||| | |||| |  ||||| ||  |||||||||||| ||||||| |||| 
seq2  ATCGTCCTATTAACTTATCCAAATCAACTCAACTAG-TGGCATC-TACT-  94

seq1  ACCACTCTTGGTGGTAGTGGTACATGCCTTTGGTTCTAGCACT-AGGGAT  148
      | |||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  AGCACTCTTGGTGGTAGTGGTACATG-CTTTGGTTCTAGCACTAAGGGAT  143

seq1  GCAG-AGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGC  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGC  193

seq1  AAGTTCTAGGACAGTCAGGCCTAAAAAGAGAAAACCTGCTTGAAACAAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAGGACAGTCAGGCCTAAAAAGAGAAAACCTGCTTGAAACAAAC  243

seq1  AAACAAACAAACAGGACAACTAAAAAGAGTAAAACAACAAAACAAAACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAGGACAACTAAAAAGAGTAAAACAACAAAACAAAACAA  293

seq1  AACAAAAATCCCAGCCTCCCAAAATAAAAACTTAGCATATTTTGGAGTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATCCCAGCCTCCCAAAATAAAAACTTAGCATATTTTGGAGTAT  343

seq1  TATTATATGCTACATAGGAAATACCTTTTAATTTTGTTTTGTTTTAATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGCTACATAGGAAATACCTTTTAATTTTGTTTTGTTTTAATTT  393

seq1  TACTTTATTTTATTTTGAGACAGGGTTACTCTCTGTGGCTCAGAAAAACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTTTATTTTGAGACAGGGTTACTCTCTGTGGCTCAGAAAAACC  443

seq1  TGAAACTCAAATTCCCCCAGCCTCTGCTTCTTGAGTGTCCAGACTGCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAAATTCCCCCAGCCTCTGCTTCTTGAGTGTCCAGACTGCCAG  493

seq1  TATGTAGCACTATACACTCTACGATAAAATTCTCATTCTCCTCCCACCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCACTATACACTCTACGATAAAATTCTCATTCTCCTCCCACCAC  543

seq1  GTGGCATGCTGAATTAGAAGGAATTTAAAATTGTGAGGCCTGGCTCACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGCTGAATTAGAAGGAATTTAAAATTGTGAGGCCTGGCTCACAG  593

seq1  CTATGTTATCCTGGCCAGATCATTTGTAGAATCCCATGGTTTCTTGTAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTATCCTGGCCAGATCATTTGTAGAATCCCATGGTTTCTTGTAGT  643

seq1  TTGTGTAATCGCTGGAATTGAAAGGCTCTATCTGACTTTCATTATCCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAATCGCTGGAATTGAAAGGCTCTATCTGACTTTCATTATCCAGA  693

seq1  CATTCAGTAATTCTGGGATTTTTTTTTTTTTCTGAGGCACAAGGAAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTAATTCTGGGATTTTTTTTTTTTTCTGAGGCACAAGGAAAAAT  743

seq1  TAAAGCCTCTCTAAGGTTTAATAAAGACTGTGATGAATTGCTTAATGAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTCTCTAAGGTTTAATAAAGACTGTGATGAATTGCTTAATGAGC  793

seq1  TTCTGCACTGTTTCAGTGATGGAGGGTCTTGTCCATGCATCAAGCTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACTGTTTCAGTGATGGAGGGTCTTGTCCATGCATCAAGCTCATT  843

seq1  GGCCATAGCCAGATGAAAAGTAATTTCCGGTTTAAGAATAATCATGGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGCCAGATGAAAAGTAATTTCCGGTTTAAGAATAATCATGGCCA  893

seq1  CCGTACTGAGGAGGGAGCAGATTGGTAAGAGGATTATTGCTAAAACAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACTGAGGAGGGAGCAGATTGGTAAGAGGATTATTGCTAAAACAAAA  943

seq1  GAATAGTTAGAGTAACAGGTGGCTAGTTTCTACATTGTGTTGGAATGACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTAGAGTAACAGGTGGCTAGTTTCTACATTGTGTTGGAATGACA  993

seq1  GGTAGGTTCTTTTTTTAAAAAGATTTCATTTATTTATTTATTCATTCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTCTTTTTTTAAAAAGATTTCATTTATTTATTTATTCATTCATT  1043

seq1  CATCCATTCATTTTGCTTACTTACTTATTCAGAGACAAAGTCTCATGTAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCATTTTGCTTACTTACTTATTCAGAGACAAAGTCTCATGTAG  1093

seq1  CTTGAGCTGGTGTCAAACTCCATTGGTAGCTAAGGAAGTCCTTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTGGTGTCAAACTCCATTGGTAGCTAAGGAAGTCCTTGAATTC  1142


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