BAC Information

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BAC

Clone NameB6Ng01-269A04
Chromosome6 (Build37)
Map Location 35,706,058 - 35,839,490
singlet/doubletdoublet
Overlap genenone
Upstream geneCald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269A04.bB6Ng01-269A04.g
ACCGA071723GA071724
length9831,177
definitionB6Ng01-269A04.b B6Ng01-269A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,838,525 - 35,839,490)(35,706,058 - 35,707,263)
sequence
gaattcctaatttataattttcaaatgatcaagtaatattcaccttatta
aattatgccctattattaggatgccaacaagaactattatactcctcaca
tgctcatgccactgtcaatactcagaggttaatgagatttattactttat
agatacctgacataaccaacttaataatggtaaactgttaccttaactca
tggtttcagagattctttgttcactttccatgctgttttggcctgaggca
aataatggcagaaatacttggttgaggaagccaatttacctcatctcagc
tgggaaacaaaacaaagagcttgaagtgaccagacactcaatgtcccctt
taaagatatcctcacaggggtggggttttgttatagtaaatattatttgg
aggtttctacccacctttgatcatttacttcccaaataaaagacacaaaa
tcattatgtttatggtaagccttaaaagcatgaggtggacaagtcaactc
tttgtactattttacttccctgtcaataaccctgagatataactcgccat
gctcctcctggaatgcacctactccaactggctgaccctcatggccatgt
tctcatgaccacctaccccttggtatcatcctctcttctcctctctctcc
ctctccttgtggtctctgcctcagaacccctgccatgaaaacagaaaccc
cacctacctctattctgcccagttagaggctgtaggcacttttattgaac
caatagttctaaattaagtaacaaggttacatagcatcacttgggtgttc
atgaggacctgggggaggggggagagtattttagcactactattaccctt
acaacaaagctaatctaaacagaaaaattttctttatatcaaaaccccat
tttttttttaaaggttcctatccataagccctccataccttaggaattgt
ggaacctagctttttatataaaggagcccttta
gaattccagtgaatggtcatgtgtcctctattaaagccacttactgattc
cccatggccctgaagaaaatagccacacttttacatgatgtacccagagc
tattactacacacacatacacacacacacatgcatattcaatttctcaga
attttaatgttagagttttggagagaggggaggcagcactctatgctatt
gtcagaaagtggaaacttagctcaagaacttttccttatctatgaagaaa
attctggtgcacaggaaatgtttgcaagattttgtgtgtatgtgtcatgt
gcatttttctttttttaaaatattttttattattatgtattttcctcaat
tacatttagaatgctattccaaagaaaacaaaatttactatttactggct
tttcattgaggtctttaaaaagttaaaattttcagggtttttttttggtt
tttgatcaaggacacataaggtgacatcatcttagtttttatacaaggat
tacttgaaaactgtatggagagatttgtacgtaattagaagcagatcaag
gcctttactatgcattagaaaggtccttaagaagaatgtaagtggttcat
attactatgataaaatcaaacattaatctgtaaatgacttcttttggtta
ttaaaataaatcctctttatccagaaaaaagcaaaaatcttcagaaacag
gaatcactgtggaagtctttctgtcctctgtaccatttcaagtgggagtc
aaagatagacagctgccgcaccctgaacttgtctatccaccgaggggaat
ctggtaatcttatagtgaaaacattattaattgaggcattagagttaaat
gcttcttttgcacattttaaattcaaaccctgatgagtggaaggtacgtg
tagcagacacatggcgaatgataataacattggttcctactgaaggttat
attggcctcctgcagaacaacgctgtctgtcatacatacattgaatcaat
gtaaaatcgatacttttaaagtgctttcctcccccaatctgagatagctc
aaatagaaggatttaaagcttcgactgaggattgaactaccacttgcaga
acctagcatggggggaagtctgattgtctgattgaatgcagactgtcaca
gtttcttaaagctttctgtggtggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35838525_35839490
seq2: B6Ng01-269A04.b_45_1027 (reverse)

seq1  TAAA-GGCTCCTT--TATTAAAAGCTAGGTTCC-CAA-TCCTAATGCTAT  45
      |||| ||||||||  ||| |||||||||||||| ||| |||||| | |||
seq2  TAAAGGGCTCCTTTATATAAAAAGCTAGGTTCCACAATTCCTAA-GGTAT  49

seq1  GGAGG--CTATGGTGTGGAACCTTT--AAAAAAAATGGGG-TTTGGTAT-  89
      |||||   |||||   |||||||||  ||||||||||||| |||| ||| 
seq2  GGAGGGCTTATGGATAGGAACCTTTAAAAAAAAAATGGGGTTTTGATATA  99

seq1  AAGAAA--TTTTCTGTTTAGATTTGCTTTGTTGCTAGG--TATTGTAGTG  135
      ||||||  ||||||||||||||| |||||||||  |||   || ||||||
seq2  AAGAAAATTTTTCTGTTTAGATTAGCTTTGTTGTAAGGGTAATAGTAGTG  149

seq1  CT-AAATACTCT-CCCCCTCCCCCAGGTCCTCATGAACA-CCAAGTGATG  182
      || ||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CTAAAATACTCTCCCCCCTCCCCCAGGTCCTCATGAACACCCAAGTGATG  199

seq1  CTATGTAACCTTGTTACTTAATTTAGAACTATTGGTTCAATAAAAGTGCC  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAACCTTGTTACTTAATTTAGAACTATTGGTTCAATAAAAGTGCC  249

seq1  TACAGCCTCTAACTGGGCAGAATAGAGGTAGGTGGGGTTTCTGTTTTCAT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTCTAACTGGGCAGAATAGAGGTAGGTGGGGTTTCTGTTTTCAT  299

seq1  GGCAGGGGTTCTGAGGCAGAGACCACAAGGAGAGGGAGAGAGAGGAGAAG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGTTCTGAGGCAGAGACCACAAGGAGAGGGAGAGAGAGGAGAAG  349

seq1  AGAGGATGATACCAAGGGGTAGGTGGTCATGAGAACATGGCCATGAGGGT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGATACCAAGGGGTAGGTGGTCATGAGAACATGGCCATGAGGGT  399

seq1  CAGCCAGTTGGAGTAGGTGCATTCCAGGAGGAGCATGGCGAGTTATATCT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTTGGAGTAGGTGCATTCCAGGAGGAGCATGGCGAGTTATATCT  449

seq1  CAGGGTTATTGACAGGGAAGTAAAATAGTACAAAGAGTTGACTTGTCCAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTATTGACAGGGAAGTAAAATAGTACAAAGAGTTGACTTGTCCAC  499

seq1  CTCATGCTTTTAAGGCTTACCATAAACATAATGATTTTGTGTCTTTTATT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTTTTAAGGCTTACCATAAACATAATGATTTTGTGTCTTTTATT  549

seq1  TGGGAAGTAAATGATCAAAGGTGGGTAGAAACCTCCAAATAATATTTACT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAAATGATCAAAGGTGGGTAGAAACCTCCAAATAATATTTACT  599

seq1  ATAACAAAACCCCACCCCTGTGAGGATATCTTTAAAGGGGACATTGAGTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAACCCCACCCCTGTGAGGATATCTTTAAAGGGGACATTGAGTG  649

seq1  TCTGGTCACTTCAAGCTCTTTGTTTTGTTTCCCAGCTGAGATGAGGTAAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCACTTCAAGCTCTTTGTTTTGTTTCCCAGCTGAGATGAGGTAAA  699

seq1  TTGGCTTCCTCAACCAAGTATTTCTGCCATTATTTGCCTCAGGCCAAAAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCTCAACCAAGTATTTCTGCCATTATTTGCCTCAGGCCAAAAC  749

seq1  AGCATGGAAAGTGAACAAAGAATCTCTGAAACCATGAGTTAAGGTAACAG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAAAGTGAACAAAGAATCTCTGAAACCATGAGTTAAGGTAACAG  799

seq1  TTTACCATTATTAAGTTGGTTATGTCAGGTATCTATAAAGTAATAAATCT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATTATTAAGTTGGTTATGTCAGGTATCTATAAAGTAATAAATCT  849

seq1  CATTAACCTCTGAGTATTGACAGTGGCATGAGCATGTGAGGAGTATAATA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCTCTGAGTATTGACAGTGGCATGAGCATGTGAGGAGTATAATA  899

seq1  GTTCTTGTTGGCATCCTAATAATAGGGCATAATTTAATAAGGTGAATATT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTTGGCATCCTAATAATAGGGCATAATTTAATAAGGTGAATATT  949

seq1  ACTTGATCATTTGAAAATTATAAATTAGGAATTC  966
      ||||||||||||||||||||||||||||||||||
seq2  ACTTGATCATTTGAAAATTATAAATTAGGAATTC  983

seq1: chr6_35706058_35707263
seq2: B6Ng01-269A04.g_64_1240

seq1  GAATTCCAGTGAATGGTCATGTGTCCTCTATTAAAGCCACTTACTGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAATGGTCATGTGTCCTCTATTAAAGCCACTTACTGATTC  50

seq1  CCCATGGCCCTGAAGAAAATAGCCACACTTTTACATGATGTACCCAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCCCTGAAGAAAATAGCCACACTTTTACATGATGTACCCAGAGC  100

seq1  TATTACTACACACACATACACACACACACATGCATATTCAATTTCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTACACACACATACACACACACACATGCATATTCAATTTCTCAGA  150

seq1  ATTTTAATGTTAGAGTTTTGGAGAGAGGGGAGGCAGCACTCTATGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGTTAGAGTTTTGGAGAGAGGGGAGGCAGCACTCTATGCTATT  200

seq1  GTCAGAAAGTGGAAACTTAGCTCAAGAACTTTTCCTTATCTATGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGTGGAAACTTAGCTCAAGAACTTTTCCTTATCTATGAAGAAA  250

seq1  ATTCTGGTGCACAGGAAATGTTTGCAAGATTTTGTGTGTATGTGTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTGCACAGGAAATGTTTGCAAGATTTTGTGTGTATGTGTCATGT  300

seq1  GCATTTTTCTTTTTTTAAAATATTTTTTATTATTATGTATTTTCCTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCTTTTTTTAAAATATTTTTTATTATTATGTATTTTCCTCAAT  350

seq1  TACATTTAGAATGCTATTCCAAAGAAAACAAAATTTACTATTTACTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAGAATGCTATTCCAAAGAAAACAAAATTTACTATTTACTGGCT  400

seq1  TTTCATTGAGGTCTTTAAAAAGTTAAAATTTTCAGGGTTTTTTTTTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGAGGTCTTTAAAAAGTTAAAATTTTCAGGGTTTTTTTTTGGTT  450

seq1  TTTGATCAAGGACACATAAGGTGACATCATCTTAGTTTTTATACAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCAAGGACACATAAGGTGACATCATCTTAGTTTTTATACAAGGAT  500

seq1  TACTTGAAAACTGTATGGAGAGATTTGTACGTAATTAGAAGCAGATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAAACTGTATGGAGAGATTTGTACGTAATTAGAAGCAGATCAAG  550

seq1  GCCTTTACTATGCATTAGAAAGGTCCTTAAGAAGAATGTAAGTGGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACTATGCATTAGAAAGGTCCTTAAGAAGAATGTAAGTGGTTCAT  600

seq1  ATTACTATGATAAAATCAAACATTAATCTGTAAATGACTTCTTTTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGATAAAATCAAACATTAATCTGTAAATGACTTCTTTTGGTTA  650

seq1  TTAAAATAAATCCTCTTTATCCAGAAAAAAGCAAAAATCTTCAGAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAATCCTCTTTATCCAGAAAAAAGCAAAAATCTTCAGAAACAG  700

seq1  GAATCACTGTGGAAGTCTTTCTGTCCTCTGTACCATTTCAAGTGGGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTGTGGAAGTCTTTCTGTCCTCTGTACCATTTCAAGTGGGAGTC  750

seq1  AAAGATAGACAGCTGCCGCACCCTGAACTTGTCTATCCACCGAGGGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGACAGCTGCCGCACCCTGAACTTGTCTATCCACCGAGGGGAAT  800

seq1  CTGGTAATCTTATAGTGAAAACATTATTAATTGAGGCATTAGAGTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATCTTATAGTGAAAACATTATTAATTGAGGCATTAGAGTTAAAT  850

seq1  GCTTCTTTTGCACATTTTAAATTCAAACCCTGATGAGTGGAAGGTACGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTTGCACATTTTAAATTCAAACCCTGATGAGTGGAAGGTACGTG  900

seq1  TAGCAGGACACATGGCGAATGATAATAAACATTGGTTCCTACTGAAGGTT  950
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCA-GACACATGGCGAATGATAAT-AACATTGGTTCCTACTGAAGGTT  948

seq1  ATATTGGCCTCCTGCAG-ACAACGCTGTCTGTTCATAACATACAATTGAA  999
      ||||||||||||||||| ||||||||||||| |||| |||||| ||||||
seq2  ATATTGGCCTCCTGCAGAACAACGCTGTCTG-TCAT-ACATAC-ATTGAA  995

seq1  TCAAATGTAAAATCGATACTTTTAAAAGTGCTTTCCTCCCCCCAATCTTG  1049
      || |||||||||||||||||||| ||||||||||||| ||||||||||  
seq2  TC-AATGTAAAATCGATACTTTT-AAAGTGCTTTCCT-CCCCCAATCTGA  1042

seq1  GAAGAATAGGCTCAAAATAGAAGAATTTAAAGCTCCGGAACTGGAGGGAT  1099
      |    ||| |||| ||||||||| |||||||||| ||  ||||   ||||
seq2  G----ATA-GCTC-AAATAGAAGGATTTAAAGCTTCG--ACTG--AGGAT  1082

seq1  TGAAACCTACCACCTTGCAGACACCTAGCATGGGGGAGAGGTCTGATTTT  1149
      ||||  |||||| |||||||| |||||||||||||| || ||||||||  
seq2  TGAA--CTACCA-CTTGCAGA-ACCTAGCATGGGGG-GAAGTCTGATT--  1125

seq1  GGGTCTGAGTTTGAATGCAGGACTGTCACCAGTTTTCTTAAAGCTTCC--  1197
        ||||||  ||||||||| |||||||| ||| ||||||||||||| |  
seq2  --GTCTGA--TTGAATGCA-GACTGTCA-CAG-TTTCTTAAAGCTTTCTG  1168

seq1  TTGTGGCAC  1206
      | |||||||
seq2  TGGTGGCAC  1177