BAC Information

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BAC

Clone NameB6Ng01-269C15
Chromosome6 (Build37)
Map Location 15,335,303 - 15,456,196
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269C15.bB6Ng01-269C15.g
ACCGA071835GA071836
length1,138997
definitionB6Ng01-269C15.b B6Ng01-269C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,455,050 - 15,456,196)(15,335,303 - 15,336,297)
sequence
gaattctataaagggttaaatatttgcagtcatattagtgacgccaagct
cttttctaggtttatctgtgagagataacaaagggatccaaagtttagca
agaagggttaattctcaaaatcaaaagtgtaataaatgatagaaagagag
gacattttgtatgtgagcagtaacttaccaatataaaccaggaatatgca
tagcattagaggataaaatgcaagaattgtttcagctacaactttttttt
tttcttgagtgtggctctgatgtacaccacatcttagaaagttgaagatg
tgctttgacatgctgcctagtaagagaggccatgccaactttcaggtgct
ctacattatacaagaggtaagtgtgcgtccatgtgctcttgcctgtggcc
acaagcagcagtgggatccacagagccctgctagccagttcttttcttct
ttgatccagctaaggcttttacaattctgttgatttcacccagatgcctg
cccttcttgaaatggtcttcatggtctcagcacaataacccgtcttaccc
acttcctctcctgagctccgcctgcatcctccttgtccccccacctccgc
ccccaccctcagctaccatcacagcttgtttagtaaatgattcttcacat
tccagtgtgaacaagtctcatcacaggtagatgcacaacaggactctggg
aaactttctacgaaatttttcatgtatatttttatactcccctgagcttt
aaactgtatagaatactgaagtgcctagcttataacccaaagtcctcttc
ttctctctttactgaatgctttggtaagaaaggaaaaatgtgtatacata
cgaaggagatgcacatgaagtcattccaaagaacagtatacaatgtgcag
attctgcagtactatgaagaccgaatatggattcaaaagagagggtgcct
ggatagtaattctactttttcagctatctcagagaagttatttaattcct
ctttatttggtacccctgtctgctgataataacatactactcatgtggtt
gttttggctgaatatcaaagagtaaacattgggaaaggtccctgacaata
tactggagtgctctgaagccattattctttcatagcaa

gaattctaaaccagcactgtatagttagagcctttctaaaagaaaaaaat
aaaggaaggaacaaagaaaaaaagaaaaggaaaagaggttgcttgcaaag
tttgtttactttattcatagaaaatagcctgtaaataatgaatagaaatt
actgggtaaacttaattttgacaatgtaaataagaaagattgagattaaa
ttctagaactttacaatttgttatagaattgttttggaaagcagcattgc
tacattagaatagatttatctgtttgcttagtaggtttttttgttgagat
ccaatttcacatgtttaacaagatcaagaacaagtgaaaacccagcctga
aatggattttattctatttaattcattaatctttgaagaaatactccact
taacaaattttgaatcttgattgaaatacttaaagatagtttcaggcttc
aaaacaatttagcctataaaagacaagtaggaaaattatcaattccaact
ttctctttttccatctttaagtatagaggggaatgcctgtatcctttggt
agagatatatgtctttgggtcttcatcttaagtaaatatttgtttagttt
gtttagtttgtttagtttaacatttagttaaagtagatagttgatgggcc
cctgatctctctctctctctctctctgtctcggtctctgtatctctctct
ctctctctctctctctctctctctctctctcacacacacacacacacaca
cacacacacaacacatacacgcgcacacacatgaaagatgagtgttatgt
ttgttgatgtcttttataacataaccatattttttgattggctgaattta
aacagtcacatatacatccgaaagatgctgcagactttcgctctgtcttt
ttggggtagaggactgctaaagaaatgaccctttttagaacaatagtctt
ctccgccgcacagttacgttggcccataggtatgaaacgtttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15455050_15456196
seq2: B6Ng01-269C15.b_44_1181 (reverse)

seq1  TTGCTATGAAAG-ATAATGGCTTCAGAGCACT-CAGTATA-TGTCAGGGA  47
      |||||||||||| ||||||||||||||||||| ||||||| |||||||||
seq2  TTGCTATGAAAGAATAATGGCTTCAGAGCACTCCAGTATATTGTCAGGGA  50

seq1  CTTTTCCAATTGTTTTACCTCTTTTGATTATTTCAAGCCAAAAACAACCA  97
      | ||||| | |||||   ||| ||||| ||||   |||| ||||||||||
seq2  CCTTTCCCAATGTTT--ACTC-TTTGA-TATT--CAGCC-AAAACAACCA  93

seq1  CATGAGGTAAGTAATGTTATTATCAGCAGACAGGGGTACCAAATTAAAGA  147
      ||||||   ||| |||||||||||||||||||||||||||||| ||||||
seq2  CATGAG--TAGT-ATGTTATTATCAGCAGACAGGGGTACCAAA-TAAAGA  139

seq1  GGAATTAAATAACTTCTCTGAGATAGCCTGAAAAAGTAGAATTACTATCC  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAATTAAATAACTTCTCTGAGATAG-CTGAAAAAGTAGAATTACTATCC  188

seq1  AGGCACCCTCTCTTTTGAATCCATATTCGGTCTTCATAGTACTGCAGAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCCTCTCTTTTGAATCCATATTCGGTCTTCATAGTACTGCAGAAT  238

seq1  CTGCACATTGTATACTGTTCTTTGGAATGACTTCATGTGCATCTCCTTCG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATTGTATACTGTTCTTTGGAATGACTTCATGTGCATCTCCTTCG  288

seq1  TATGTATACACATTTTTCCTTTCTTACCAAAGCATTCAGTAAAGAGAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACACATTTTTCCTTTCTTACCAAAGCATTCAGTAAAGAGAGAA  338

seq1  GAAGAGGACTTTGGGTTATAAGCTAGGCACTTCAGTATTCTATACAGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACTTTGGGTTATAAGCTAGGCACTTCAGTATTCTATACAGTTT  388

seq1  AAAGCTCAGGGGAGTATAAAAATATACATGAAAAATTTCGTAGAAAGTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAGGGGAGTATAAAAATATACATGAAAAATTTCGTAGAAAGTTT  438

seq1  CCCAGAGTCCTGTTGTGCATCTACCTGTGATGAGACTTGTTCACACTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTCCTGTTGTGCATCTACCTGTGATGAGACTTGTTCACACTGGA  488

seq1  ATGTGAAGAATCATTTACTAAACAAGCTGTGATGGTAGCTGAGGGTGGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGAATCATTTACTAAACAAGCTGTGATGGTAGCTGAGGGTGGGG  538

seq1  GCGGAGGTGGGGGGACAAGGAGGATGCAGGCGGAGCTCAGGAGAGGAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGTGGGGGGACAAGGAGGATGCAGGCGGAGCTCAGGAGAGGAAGT  588

seq1  GGGTAAGACGGGTTATTGTGCTGAGACCATGAAGACCATTTCAAGAAGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGACGGGTTATTGTGCTGAGACCATGAAGACCATTTCAAGAAGGG  638

seq1  CAGGCATCTGGGTGAAATCAACAGAATTGTAAAAGCCTTAGCTGGATCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCTGGGTGAAATCAACAGAATTGTAAAAGCCTTAGCTGGATCAA  688

seq1  AGAAGAAAAGAACTGGCTAGCAGGGCTCTGTGGATCCCACTGCTGCTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGAACTGGCTAGCAGGGCTCTGTGGATCCCACTGCTGCTTGT  738

seq1  GGCCACAGGCAAGAGCACATGGACGCACACTTACCTCTTGTATAATGTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGCAAGAGCACATGGACGCACACTTACCTCTTGTATAATGTAG  788

seq1  AGCACCTGAAAGTTGGCATGGCCTCTCTTACTAGGCAGCATGTCAAAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGAAAGTTGGCATGGCCTCTCTTACTAGGCAGCATGTCAAAGCA  838

seq1  CATCTTCAACTTTCTAAGATGTGGTGTACATCAGAGCCACACTCAAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAACTTTCTAAGATGTGGTGTACATCAGAGCCACACTCAAGAAA  888

seq1  AAAAAAAAGTTGTAGCTGAAACAATTCTTGCATTTTATCCTCTAATGCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTTGTAGCTGAAACAATTCTTGCATTTTATCCTCTAATGCTA  938

seq1  TGCATATTCCTGGTTTATATTGGTAAGTTACTGCTCACATACAAAATGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTCCTGGTTTATATTGGTAAGTTACTGCTCACATACAAAATGTC  988

seq1  CTCTCTTTCTATCATTTATTACACTTTTGATTTTGAGAATTAACCCTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTATCATTTATTACACTTTTGATTTTGAGAATTAACCCTTCT  1038

seq1  TGCTAAACTTTGGATCCCTTTGTTATCTCTCACAGATAAACCTAGAAAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACTTTGGATCCCTTTGTTATCTCTCACAGATAAACCTAGAAAAG  1088

seq1  AGCTTGGCGTCACTAATATGACTGCAAATATTTAACCCTTTATAGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGCGTCACTAATATGACTGCAAATATTTAACCCTTTATAGAATTC  1138


seq1: chr6_15335303_15336297
seq2: B6Ng01-269C15.g_63_1059

seq1  GAATTCTAAACCAGCACTGTATAGTTAGAGCCTTTCTAAAAGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCAGCACTGTATAGTTAGAGCCTTTCTAAAAGAAAAAAAT  50

seq1  AAAGGAAGGAACAAAGAAAAAAAGAAAAGGAAAAGAGGTTGCTTGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGAACAAAGAAAAAAAGAAAAGGAAAAGAGGTTGCTTGCAAAG  100

seq1  TTTGTTTACTTTATTCATAGAAAATAGCCTGTAAATAATGAATAGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACTTTATTCATAGAAAATAGCCTGTAAATAATGAATAGAAATT  150

seq1  ACTGGGTAAACTTAATTTTGACAATGTAAATAAGAAAGATTGAGATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAAACTTAATTTTGACAATGTAAATAAGAAAGATTGAGATTAAA  200

seq1  TTCTAGAACTTTACAATTTGTTATAGAATTGTTTTGGAAAGCAGCATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAACTTTACAATTTGTTATAGAATTGTTTTGGAAAGCAGCATTGC  250

seq1  TACATTAGAATAGATTTATCTGTTTGCTTAGTAGGTTTTTTTGTTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGAATAGATTTATCTGTTTGCTTAGTAGGTTTTTTTGTTGAGAT  300

seq1  CCAATTTCACATGTTTAACAAGATCAAGAACAAGTGAAAACCCAGCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCACATGTTTAACAAGATCAAGAACAAGTGAAAACCCAGCCTGA  350

seq1  AATGGATTTTATTCTATTTAATTCATTAATCTTTGAAGAAATACTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTTTATTCTATTTAATTCATTAATCTTTGAAGAAATACTCCACT  400

seq1  TAACAAATTTTGAATCTTGATTGAAATACTTAAAGATAGTTTCAGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATTTTGAATCTTGATTGAAATACTTAAAGATAGTTTCAGGCTTC  450

seq1  AAAACAATTTAGCCTATAAAAGACAAGTAGGAAAATTATCAATTCCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTAGCCTATAAAAGACAAGTAGGAAAATTATCAATTCCAACT  500

seq1  TTCTCTTTTTCCATCTTTAAGTATAGAGGGGAATGCCTGTATCCTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTTCCATCTTTAAGTATAGAGGGGAATGCCTGTATCCTTTGGT  550

seq1  AGAGATATATGTCTTTGGGTCTTCATCTTAAGTAAATATTTGTTTAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATATGTCTTTGGGTCTTCATCTTAAGTAAATATTTGTTTAGTTT  600

seq1  GTTTAGTTTGTTTAGTTTAACATTTAGTTAAAGTAGATAGTTGATGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTGTTTAGTTTAACATTTAGTTAAAGTAGATAGTTGATGGGCC  650

seq1  CCTGATCTCTCTCTCTCTCTCTCTCTGTCTCGGTCTCTGTATCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTCTCTCTCTCTCTCTCTCTGTCTCGGTCTCTGTATCTCTCTCT  700

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACA  750

seq1  CACACACACAACACACACACACACACACACATGAAAGATGAGTGTTATGT  800
      ||||||||||||||| |||| | |||||||||||||||||||||||||||
seq2  CACACACACAACACATACACGCGCACACACATGAAAGATGAGTGTTATGT  800

seq1  TTGTTGATGCTTTTAATAAACATAACAATA-TTTTTGATTGGCTGAGTTT  849
      |||||||||  ||| || |||||||| ||| ||||||||||||||| |||
seq2  TTGTTGATGTCTTTTAT-AACATAACCATATTTTTTGATTGGCTGAATTT  849

seq1  AAACAAGCACATAGACATCCGAAAGATGCTGCAGACATTCGCTCTGTC-T  898
      |||||  |||||| |||||||||||||||||||||| ||||||||||| |
seq2  AAACAGTCACATATACATCCGAAAGATGCTGCAGACTTTCGCTCTGTCTT  899

seq1  TCTGGGGGAGAGGACTGCTAGAGAATTGACCC-TTCTAGAAC-AGAGTCT  946
      | ||||| |||||||||||| |||| |||||| || |||||| | |||||
seq2  TTTGGGGTAGAGGACTGCTAAAGAAATGACCCTTTTTAGAACAATAGTCT  949

seq1  TCTCCGCAGCACAGTTACTATGGCCACATAGGTATGAAACGTTTTAAAA  995
      ||||||| ||||||||||  ||||| |||||||||||||||||| ||||
seq2  TCTCCGCCGCACAGTTACGTTGGCC-CATAGGTATGAAACGTTTAAAAA  997


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