BAC Information

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BAC

Clone NameB6Ng01-269F03
Chromosome6 (Build37)
Map Location 39,352,782 - 39,424,447
singlet/doubletdoublet
Overlap geneMkrn1, ENSMUSG00000068601, Dennd2a
Upstream geneTtc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19
Downstream geneAdck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269F03.bB6Ng01-269F03.g
ACCGA071950GA071951
length1,1581,046
definitionB6Ng01-269F03.b B6Ng01-269F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,352,782 - 39,353,953)(39,423,411 - 39,424,447)
sequence
gaattctcctcagagaattttctttacccatctccactgagactacatgg
ataatgctactatcaaagggcactgaccatacaagcctagcagcccaagc
ataagtggagggaatagctcctcagaattgccctgtcttctacaaagggc
tgtggcattcgtgagcacacatgaaataacaaacttaaaaagaaagttga
gggctggtgagatggctcagtgggtaagagcacccgactgctcttccgaa
ggtccagagttcaaatcccagcaaccacatggtggctcacaaccatccat
aaggaaatctgactccctcttctggagtgtctgaggacagctacagtgta
cttacatataataaataaataaatcttaaaaaaaaaaaaggaaagctgaa
tgtagggctggagagatggcttggcagttaagagcccgggctgctgcttc
aaaggacttggttcagttctcaaaaaccacaaggcagctccatagctctt
gttccagaaaatctgacaccatctggcctctgggtaaacagggcagcact
atactagccagccaggcactcaaagtgctaagcagaattactagctgacc
cagccactacacttccgaaggtgatccaaaacagggccagcctgacaaat
gacctagtatgtcagaagacctactgactgccaggcctagaaaactgagt
tgaagtactgggtttcacatagtggaaggagaaaacaacacccaagctgt
ccattgacctctctacatacaaccctccccataatgagtaaactcatgta
aaaagcaatttttaaaggacagctaagataaagacacatgttcacaaaaa
accaaaaacttacacacaatgaagtaattaaaatatccatcaggtaatta
atagaaaagcccacagcattggggctgggaggattcctcagtaaacggct
cacgtactgtacaaccatgagcacctgggtttgggctctcagtacatgtg
tgaagccaggcacagcaagtgtatgtatatcccagcgctgagaatatgga
gacgaacagcagccatccaatggtgagctcagatggagtgagaggcttgc
ctcaaattgagtaagagaacatgagagaccatgtaacctctgctctgtgt
aaggtact
gaattccatcagcgcttactgcagcaattggaaaaatcgaaagctcttcg
tagagtccttcatttcttctctgccacttatgttatagggaacaagcagc
taccaccggtgtaattacagaatccagccttgccattccttggtgcccag
aacagaattgtttatggtagccagcgaatgggctggagtaagaggaatga
ggtctccagcagctgcatgcctgttgtcctgctggttctctgtcctccct
ccctcctgtctggttaccgaggtgttaatgataaccaggtatcaggggtg
tttgatcctcagctgtgataaaggctctgacctttaaacagagaaaaatc
ctgaacactcctttcaagaaatagctgtgagtagcagcccctacctactg
tgttccaactgtcacccaactgtgtcctccccggttatcccctgcagaac
tgaatacagggctgggatgtagcgtacttgaggccctgggttcattcagt
ccctgtgactgtgaggaaaagagaaatttgaatatagcggatcttgcgct
cagcatcctgatggcggagtgtctctctaatcctccttcaccagacctgt
gtacctagcatccacatggattcacagtgatttttcctagccttggtcca
actatattctcaacttcccttccacctggtttgctgaagtccctgacggc
agcagagggttcttttttgtttgtttgtttgtttgtttgtttgtttgttt
tttcgagacagggtttctctgtgtagcccgggctgtcctggacctcactt
ttgtagaccaagctggcctcgaactcagaaatccgcctgcagagggttct
taaagggtgtcatagagtgctatagcatggagagagagcagcctttctgg
aggatgagacttacaggaaaaagtcagcttgctctttttttctgatttgg
ggaaaagggccagttaggttccttttcctaccggcatgggctggagaaag
cacacaaggctgtctcccctgagctctgagtctccttcgtcccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39352782_39353953
seq2: B6Ng01-269F03.b_47_1204

seq1  GAATTCTCCTCAGAGAATTTTCTTTACCCATCTCCACTGAGACTACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCAGAGAATTTTCTTTACCCATCTCCACTGAGACTACATGG  50

seq1  ATAATGCTACTATCAAAGGGCACTGACCATACAAGCCTAGCAGCCCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTACTATCAAAGGGCACTGACCATACAAGCCTAGCAGCCCAAGC  100

seq1  ATAAGTGGAGGGAATAGCTCCTCAGAATTGCCCTGTCTTCTACAAAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGAGGGAATAGCTCCTCAGAATTGCCCTGTCTTCTACAAAGGGC  150

seq1  TGTGGCATTCGTGAGCACACATGAAATAACAAACTTAAAAAGAAAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCATTCGTGAGCACACATGAAATAACAAACTTAAAAAGAAAGTTGA  200

seq1  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAA  250

seq1  GGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCAT  300

seq1  AAGGAAATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA  350

seq1  CTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAGGAAAGCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAGGAAAGCTGAA  400

seq1  TGTAGGGCTGGAGAGATGGCTTGGCAGTTAAGAGCCCGGGCTGCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCTGGAGAGATGGCTTGGCAGTTAAGAGCCCGGGCTGCTGCTTC  450

seq1  AAAGGACTTGGTTCAGTTCTCAAAAACCACAAGGCAGCTCCATAGCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTGGTTCAGTTCTCAAAAACCACAAGGCAGCTCCATAGCTCTT  500

seq1  GTTCCAGAAAATCTGACACCATCTGGCCTCTGGGTAAACAGGGCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAAAATCTGACACCATCTGGCCTCTGGGTAAACAGGGCAGCACT  550

seq1  ATACTAGCCAGCCAGGCACTCAAAGTGCTAAGCAGAATTACTAGCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGCCAGCCAGGCACTCAAAGTGCTAAGCAGAATTACTAGCTGACC  600

seq1  CAGCCACTACACTTCCGAAGGTGATCCAAAACAGGGCCAGCCTGACAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTACACTTCCGAAGGTGATCCAAAACAGGGCCAGCCTGACAAAT  650

seq1  GACCTAGTATGTCAGAAGACCTACTGACTGCCAGGCCTAGAAAACTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGTATGTCAGAAGACCTACTGACTGCCAGGCCTAGAAAACTGAGT  700

seq1  TGAAGTACTGGGTTTCACATAGTGGAAGGAGAAAACAACACCCAAGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTACTGGGTTTCACATAGTGGAAGGAGAAAACAACACCCAAGCTGT  750

seq1  CCATTGACCTCTCTACATACAACCCTCCCCATAATGAGTAAACTCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACCTCTCTACATACAACCCTCCCCATAATGAGTAAACTCATGTA  800

seq1  AAAAGCAATTTTTAAAGGACAGCTAAGATAAAGACACATGTTCACAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATTTTTAAAGGACAGCTAAGATAAAGACACATGTTCACAAAAA  850

seq1  ACCAAAAACTTACACACAATGAAGTAATTAAAATATCCATCAGGTAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAACTTACACACAATGAAGTAATTAAAATATCCATCAGGTAATTA  900

seq1  ATAGAAAAGCCCACAGCATTGGGGCTGGGAGGATTCCTCAGTAAACGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGCCCACAGCATTGGGGCTGGGAGGATTCCTCAGTAAACGGCT  950

seq1  CACGTACTGTACAACCATGAGCACCTGGGTTTGGGCTCTCAGTACATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACTGTACAACCATGAGCACCTGGGTTTGGGCTCTCAGTACATGTG  1000

seq1  TGAAGCCAGGCACAGCAAGTGTATGTATATCCCAGCGCTGAG-ATATGGA  1049
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAGCCAGGCACAGCAAGTGTATGTATATCCCAGCGCTGAGAATATGGA  1050

seq1  GACGACAGGCAGGCAATCCAATTGGTGAGCTCCAGATGGAGTGAGAGGCC  1099
      |||||   ||| || |||||| ||||||||| |||||||||||||||| |
seq2  GACGAACAGCA-GCCATCCAA-TGGTGAGCT-CAGATGGAGTGAGAGG-C  1096

seq1  TTGCCTCAAAATTGAGGTAGAGAACAATGAAGGAAGACCCAATGGTAACC  1149
      ||||||| ||||||||  ||||||| ||||    |||||  || ||||||
seq2  TTGCCTC-AAATTGAGTAAGAGAAC-ATGA---GAGACC--AT-GTAACC  1138

seq1  TCTGCCCTCTGTGTAAGTGTACT  1172
      ||||  ||||||||||| |||||
seq2  TCTG--CTCTGTGTAAG-GTACT  1158

seq1: chr6_39423411_39424447
seq2: B6Ng01-269F03.g_69_1114 (reverse)

seq1  AAGGGGACGGAAGGAGACTCAGAGCTCAGGGAGGACAGCC-TGTGTGCTT  49
      |||||||| ||||||||||||||||||||||  ||||||| |||||||||
seq2  AAGGGGAC-GAAGGAGACTCAGAGCTCAGGGGAGACAGCCTTGTGTGCTT  49

seq1  TCT-CAGCCATTGCC-GTAGGAAAAGAAACCT-ACTTGACCTTTTCCCCA  96
      ||| |||||  |||| |||||||||| ||||| ||| | |||||||||||
seq2  TCTCCAGCCCATGCCGGTAGGAAAAGGAACCTAACTGGCCCTTTTCCCCA  99

seq1  AATCAGAAAAAAAGAGC-AGCTGACTTTTTCCTGTAAGTCTCAT-CTCCA  144
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  AATCAGAAAAAAAGAGCAAGCTGACTTTTTCCTGTAAGTCTCATCCTCCA  149

seq1  G-AAGGCTGCTCTCTCTCC-TGCTATAGCACTCTATGACA-CCTTTAAGA  191
      | ||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  GAAAGGCTGCTCTCTCTCCATGCTATAGCACTCTATGACACCCTTTAAGA  199

seq1  ACCCTCTGCAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGTCTAC-AAAG  240
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCCTCTGCAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGTCTACAAAAG  249

seq1  TGAGGTCCAGGACAGCCCGGGCTACACAGAGAAACCCTGTCTCGAAAAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCAGGACAGCCCGGGCTACACAGAGAAACCCTGTCTCGAAAAAA  299

seq1  CAAACAAACAAACAAACAAACAAACAAACAAAAAAGAACCCTCTGCTGCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAACAAACAAAAAAGAACCCTCTGCTGCC  349

seq1  GTCAGGGACTTCAGCAAACCAGGTGGAAGGGAAGTTGAGAATATAGTTGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGACTTCAGCAAACCAGGTGGAAGGGAAGTTGAGAATATAGTTGG  399

seq1  ACCAAGGCTAGGAAAAATCACTGTGAATCCATGTGGATGCTAGGTACACA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTAGGAAAAATCACTGTGAATCCATGTGGATGCTAGGTACACA  449

seq1  GGTCTGGTGAAGGAGGATTAGAGAGACACTCCGCCATCAGGATGCTGAGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGTGAAGGAGGATTAGAGAGACACTCCGCCATCAGGATGCTGAGC  499

seq1  GCAAGATCCGCTATATTCAAATTTCTCTTTTCCTCACAGTCACAGGGACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATCCGCTATATTCAAATTTCTCTTTTCCTCACAGTCACAGGGACT  549

seq1  GAATGAACCCAGGGCCTCAAGTACGCTACATCCCAGCCCTGTATTCAGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACCCAGGGCCTCAAGTACGCTACATCCCAGCCCTGTATTCAGTT  599

seq1  CTGCAGGGGATAACCGGGGAGGACACAGTTGGGTGACAGTTGGAACACAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGGATAACCGGGGAGGACACAGTTGGGTGACAGTTGGAACACAG  649

seq1  TAGGTAGGGGCTGCTACTCACAGCTATTTCTTGAAAGGAGTGTTCAGGAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGGGCTGCTACTCACAGCTATTTCTTGAAAGGAGTGTTCAGGAT  699

seq1  TTTTCTCTGTTTAAAGGTCAGAGCCTTTATCACAGCTGAGGATCAAACAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTTTAAAGGTCAGAGCCTTTATCACAGCTGAGGATCAAACAC  749

seq1  CCCTGATACCTGGTTATCATTAACACCTCGGTAACCAGACAGGAGGGAGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATACCTGGTTATCATTAACACCTCGGTAACCAGACAGGAGGGAGG  799

seq1  GAGGACAGAGAACCAGCAGGACAACAGGCATGCAGCTGCTGGAGACCTCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGAACCAGCAGGACAACAGGCATGCAGCTGCTGGAGACCTCA  849

seq1  TTCCTCTTACTCCAGCCCATTCGCTGGCTACCATAAACAATTCTGTTCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTACTCCAGCCCATTCGCTGGCTACCATAAACAATTCTGTTCTG  899

seq1  GGCACCAAGGAATGGCAAGGCTGGATTCTGTAATTACACCGGTGGTAGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAAGGAATGGCAAGGCTGGATTCTGTAATTACACCGGTGGTAGCT  949

seq1  GCTTGTTCCCTATAACATAAGTGGCAGAGAAGAAATGAAGGACTCTACGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCCCTATAACATAAGTGGCAGAGAAGAAATGAAGGACTCTACGA  999

seq1  AGAGCTTTCGATTTTTCCAATTGCTGCAGTAAGCGCTGATGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTCGATTTTTCCAATTGCTGCAGTAAGCGCTGATGGAATTC  1046