BAC Information

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BAC

Clone NameB6Ng01-269L13
Chromosome6 (Build37)18 (Build37)
Map Location 131,055,021 - 131,055,53690,214,974 - 90,216,026
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100038894, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
Downstream geneLOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269L13.bB6Ng01-269L13.g
ACCGA072241GA072242
length1,1831,078
definitionB6Ng01-269L13.b B6Ng01-269L13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,055,021 - 131,055,536)(90,214,974 - 90,216,026)
sequence
gaattctttatacatatttgatattagtcccctatctgatttaggatagg
taaagatcctttcctaatctgttggtggtctttttgtcttactgacggtg
tcttttgccttgcagaaactttggagtttcattaggtcccatttgtcaat
tcttgatcttacagtacaagccattgctgttctgttcaggaattttcccc
ctgtgcccatatcttcaaggcttttccccactttctcctctataagtttc
agtgtctctggttttatgtgaagttccttgatccacttagatttgacctt
agtacaaggagataagtatggatcgattcgcattcttctacacgataaca
accagttgtgccagcaccaattgttgaaaatgctgtctttcttccactgg
atggttttagctcccttgtcgaagatcaagtgaccataggtgtgtgggtt
catttctgggtcttcaattctattccattggtctacttgtctgtctctat
accagtttttatcacaattgctctgtagtaaagctttaggtcaggcatgg
tgattccaccagaggttcttttatccttgagaagactttttgctatccta
ggttttttgttattccagatgaatttgcaaattgttccttctaattcgtt
gaagaattgagttggaattttgatggggattgcattgaatctgcagattg
cttttggcaagatagccatttttacaatgttgatcctgccaatccatgag
catgggagatctttccatcttctgagatcttctttaatttctttcttcag
agacttgaagtttttatcatagagatctttcacttccttagttagagtca
cgccaagatattttataatatttgtgactattgagaaagggtgttgtttc
cctaatttctttctcagcctgtttattctttgtatagagaaaggccattg
acttggtttgagtttattttatatccagctactttactgagctgtttatc
agttaggaagttctctggtagaatttttagggtcatttatattatactta
tcatatcatctgcaaaagtgatatttttggacttcctctttccattgttc
ccgtgatctcttttgttgttgaattgcctctggcctataccttcaggtac
tagtgcacagctaaggggagaaagtgggcagcc
gaattcctgtgtattcaaacatgtgtgtctctgcatctgtatgtatttct
tgtgttttttttttcttttgctatttttcttttgtttgttttgttctgct
ccagtttatttgttttttctttatttaatttaattttgttgttattattt
aaatgtctgtttcctaatagaagacagaaggaatgtggatttggatggga
ttaaatggtacttaaaatatgttgtatgaaagaaatctattctcaagcta
ttttaaagacattttcattaatttttattagctgtatttttaatttatgt
attcaaatacatgtacatctatacatgatttattttaatttgcatataac
tgtgtttggttaacaaatatgtggtactttttggaaatgcagggcttaga
gtaataactgatgaagatgttcatgcctttcatgaaaaggttttactttt
attgtacattctttgctcagaggtaatgtccataacactcaaaataaaaa
tttaagtatatatatatatgtatgagttaattcaaaaaacatacctgagt
taatgggtaattatatgaattacctcttgtctttttgttgtttgggcatt
taatgtatgtatataatatattttggtcaatttctcctgttttacctcct
tcaatttcttcacaatcccagagaccatctttgcctccaaatgtcatgtg
ctaatatttttaaaagatatactgaatctacgtagtaccatctgtatgta
catgaatatgtaccatctactggagcagatgtatgctcttaggagctcga
gctcttaagaaaattaactctttctttcaggccaaccagctgttgctcat
tactaggaagttatgggtggaacctcatgaatcctttctcggttgtctga
agttttgactgacttgattgttcaaggtttggtgcatgcaatctcagttc
ctgtgggtttcacgtggacaatttttgtgtcatgcttgggcaattatcat
ttttgttgcagagctgctacattcttgctttttaatcttttttcctgcca
caaaacgtgtaggtggctatatcaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131055021_131055536
seq2: B6Ng01-269L13.b_717_1231 (reverse)

seq1  GGCTGCCCACTTTCTCCC--TACCTTTTCAACATAGTACTTGAA-GTATT  47
      ||||||||||||||||||  || || | ||   |||||| |||| |||| 
seq2  GGCTGCCCACTTTCTCCCCTTAGCTGTGCA--CTAGTACCTGAAGGTATA  48

seq1  AGCCAGA-GCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGA  96
       |||||| ||||||| ||||||||| ||||||| |||   ||||  ||| 
seq2  GGCCAGAGGCAATTCAACAACAAAA-GAGATCACGGG--AACAA--TGG-  92

seq1  AAAGAGGAAGTC--AAAATATCACTTTTTGCAGATGATATGAT-AGTAT-  142
      ||||||||||||  |||||||||| |||||||||||||||||| ||||| 
seq2  AAAGAGGAAGTCCAAAAATATCAC-TTTTGCAGATGATATGATAAGTATA  141

seq1  ATATAAGTGACCCTAAAAATTCTACCAGAGAAC-TCCTAAACCTGATAAA  191
      |||||| |||||||||||||||||||||||||| ||||||  ||||||||
seq2  ATATAAATGACCCTAAAAATTCTACCAGAGAACTTCCTAA--CTGATAAA  189

seq1  CAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAA-CAAGTCAATG  240
      |||| || || |||||||||||||||||||||||||||| ||||||||||
seq2  CAGC-TCAGTAAAGTAGCTGGATATAAAATAAACTCAAACCAAGTCAATG  238

seq1  GCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAC  288

seq1  AACACCC-TTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACT  339
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  AACACCCTTTCTCAATAGTCACAAATATTATAAAATATCTTGGCGTGACT  338

seq1  CTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA  389
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  CTAACTAAGGAAGTGAAAGATCTCTATGATAAAAACTTCAAGTCTCTGAA  388

seq1  GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  438

seq1  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  488

seq1  TACAGATTCAATGCAATCCCCATCAAA  516
      | |||||||||||||||||||||||||
seq2  TGCAGATTCAATGCAATCCCCATCAAA  515

seq1: chr18_90214974_90216026
seq2: B6Ng01-269L13.g_90_1145 (reverse)

seq1  AAGTTGAATATAGGCCACCTACACG-TTTGTGGCAGGAAAAAAAATTTAA  49
      | |||| ||||| |||||||||||| ||||||||||||||||| ||| ||
seq2  AGGTTG-ATATA-GCCACCTACACGTTTTGTGGCAGGAAAAAAGATTAAA  48

seq1  AAGCAAG-ATGTAGCAGCTCTGCAGCAAAAAAGATAATTG-CCAAGCATG  97
      ||||||| |||||||||||||||| |||||| |||||||| |||||||||
seq2  AAGCAAGAATGTAGCAGCTCTGCAACAAAAATGATAATTGCCCAAGCATG  98

seq1  ACAC-AAAATTGTCCACGTG-AACCCACAGGAACTGAGATTGCATGCACC  145
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACAAAAATTGTCCACGTGAAACCCACAGGAACTGAGATTGCATGCACC  148

seq1  AAACCTTG-ACAATCAAGTCAGTCAAAACTTCAGACAACCGAGAAGGATT  194
      |||||||| |||||||||||||||||||||||||||||||||||| |  |
seq2  AAACCTTGAACAATCAAGTCAGTCAAAACTTCAGACAACCGAGAAAGGAT  198

seq1  TCATGAGGTTCCACCCATAACTTCCTAGTAATGAGCAACAGCTGGTTGGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGTTCCACCCATAACTTCCTAGTAATGAGCAACAGCTGGTTGGC  248

seq1  CTGAAAAGAAAGAGTTAATTTTCTTAAGAGCTCGAGCTCCTAAGAGCATA  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-AAAGAAAGAGTTAATTTTCTTAAGAGCTCGAGCTCCTAAGAGCATA  297

seq1  CATCTGCTCCAGTAGATGGTACATATTCATGTACATACAGATGGTACTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCCAGTAGATGGTACATATTCATGTACATACAGATGGTACTAC  347

seq1  GTAGATTCAGTATATCTTTTAAAAATATTAGCACATGACATTTGGAGGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTCAGTATATCTTTTAAAAATATTAGCACATGACATTTGGAGGCA  397

seq1  AAGATGGTCTCTGGGATTGTGAAGAAATTGAAGGAGGTAAAACAGGAGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTCTCTGGGATTGTGAAGAAATTGAAGGAGGTAAAACAGGAGAA  447

seq1  ATTGACCAAAATATATTATATACATACATTAAATGCCCAAACAACAAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCAAAATATATTATATACATACATTAAATGCCCAAACAACAAAAA  497

seq1  GACAAGAGGTAATTCATATAATTACCCATTAACTCAGGTATGTTTTTTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGGTAATTCATATAATTACCCATTAACTCAGGTATGTTTTTTGA  547

seq1  ATTAACTCATACATATATATATATACTTAAATTTTTATTTTGAGTGTTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCATACATATATATATATACTTAAATTTTTATTTTGAGTGTTAT  597

seq1  GGACATTACCTCTGAGCAAAGAATGTACAATAAAAGTAAAACCTTTTCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTACCTCTGAGCAAAGAATGTACAATAAAAGTAAAACCTTTTCAT  647

seq1  GAAAGGCATGAACATCTTCATCAGTTATTACTCTAAGCCCTGCATTTCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCATGAACATCTTCATCAGTTATTACTCTAAGCCCTGCATTTCCA  697

seq1  AAAAGTACCACATATTTGTTAACCAAACACAGTTATATGCAAATTAAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACCACATATTTGTTAACCAAACACAGTTATATGCAAATTAAAAT  747

seq1  AAATCATGTATAGATGTACATGTATTTGAATACATAAATTAAAAATACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGTATAGATGTACATGTATTTGAATACATAAATTAAAAATACAG  797

seq1  CTAATAAAAATTAATGAAAATGTCTTTAAAATAGCTTGAGAATAGATTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAATTAATGAAAATGTCTTTAAAATAGCTTGAGAATAGATTTC  847

seq1  TTTCATACAACATATTTTAAGTACCATTTAATCCCATCCAAATCCACATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACAACATATTTTAAGTACCATTTAATCCCATCCAAATCCACATT  897

seq1  CCTTCTGTCTTCTATTAGGAAACAGACATTTAAATAATAACAACAAAATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCTTCTATTAGGAAACAGACATTTAAATAATAACAACAAAATT  947

seq1  AAATTAAATAAAGAAAAAACAAATAAACTGGAGCAGAACAAAACAAACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATAAAGAAAAAACAAATAAACTGGAGCAGAACAAAACAAACAA  997

seq1  AAGAAAAATAGCAAAAGAAAAAAAAAACACAAGAAATACATACAGATGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATAGCAAAAGAAAAAAAAAACACAAGAAATACATACAGATGCA  1047

seq1  GAGACACAC  1053
      |||||||||
seq2  GAGACACAC  1056