BAC Information

Click to search

BAC

Clone NameB6Ng01-270A17
Chromosome6 (Build37)
Map Location 79,329,227 - 79,492,404
singlet/doubletdoublet
Overlap geneLOC621815
Upstream geneReg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A17.bB6Ng01-270A17.g
ACCGA072487GA072488
length1,1251,114
definitionB6Ng01-270A17.b B6Ng01-270A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,329,227 - 79,330,368)(79,491,288 - 79,492,404)
sequence
gaattcagagatttttattatcatagtgttagtaaaataccatatatatt
ttagtgattagttggattaacgcaaaggaaactagtaatggaatttggat
ttgtatttatgttaagtaaaagctgaataataattttagatattgtatat
ttctagatttcattgtcaataaatcactgccaatttatgactttaacatt
ttccttccaagcattttttaaagtggttctaaaaataagcatatttatca
agacaggtgagatggctcagttggaaaagagattgctgtgaaagtagcat
tcctaaactctaatcctgagcatccacaggaaggagaaacacagatacct
atttctgtaaccaaagttgctttaaaaaaaaaaaaaaaaaaggagccagg
atgatccctatggctgggccagacaggccagctcagatggtgagctctgg
gttcagttagaggacctgtctcataaaaatatgagtgtgatggagaaaga
catggacattgacgtctggctcttacatacacacacgcccgcacacacac
attcacacgtacacgtacatatacacataaaaattacatctctcttcata
tatatgtaggtttagatatgtaaattgtataggtagatatgaatataaaa
atttatacagagagaaaacacataagtatttgtttaacgtgtttattttt
atatacgtaaagatagatgagtaaatagatagacagacagatagatacat
aaatacatagacacatagatagattcataggtacatggagatgatagaca
attttatagcacatggaggcctaaatctagggagaattcttcctgtattc
ctttgagtcattttcagtgtcaagcctgcagtaccagtctctctctccag
gcttctctggtgcctgtgtgaactgttctttgcttctgttagactgatag
cgcttgagtacgctatccgttcagcaggtattttcccagactactaaact
tttgtgttttgaaactcattttctatacataactgacttcaactcttcta
acctaaacacataacacatttcttctcaatcatcctgctgtatccattgg
ctgttcttgggtgagtgggaaagta

gaattctcacctgaggaataccgaatggtagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatgggtaagatcaaatattattttctaagg
atgcatatctgtcttcaaattccgttagcaaatctctttgcttttttcaa
atatagcaagtgccatgttttaatttgaaaattcctaatcatatatttga
agtattctgattatttattttatcttatagttgataatttttcctatttg
attattaagttttatatatacttctagaaaacaatgtcctacatttcttt
tttggacaagaacatttctttataaactgtttaacagatattcacatcag
tacacaggctttaagaacaatggaactggacttttggatctcatcttaga
cagtacttgatttctggtcttgagagagatgtgggaactttgcctggaga
aatttttctatctttttctgtaaacttctctttcttgcttcaatgtggga
gtatttcttaattcttagtctgataaagcaatccacataaagcattgtga
agaacagcatctattgtatcttttacttaggtaccaaggtataggccact
gcttgaatttgtgccagatgttttgtccaaagatatctcttctccaagca
ccaggtctgggtttttcttgacaggtctgaaaaagctttagagcatcttc
cctctcctggacaacctatctaaggcatccatgcaatcaataaccttttc
taagtgctctggatttggcattggcaacctctgtagcttggccctcctgc
tctagagttagaaacatatttctttcctttagaggacataccaaagctta
agtaagtcttcgttacttttgttcctcagctgctggcaggtccatgaagc
tccagatttgactttttcttccccccaattctttgggtcttcaacaaatt
cttctagtcctttctgacatgtggtatgagtaatttaccactgcagaacg
atgtgaattgtgtgtgtttctttatgcaacaactaagagagccttgcaac
ccccagcggagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79329227_79330368
seq2: B6Ng01-270A17.b_42_1166

seq1  GAATTCAGAGATTTTTATTATCATAGTGTTAGTAAAATACCATATATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTTTTATTATCATAGTGTTAGTAAAATACCATATATATT  50

seq1  TTAGTGATTAGTTGGATTAACGCAAAGGAAACTAGTAATGGAATTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATTAGTTGGATTAACGCAAAGGAAACTAGTAATGGAATTTGGAT  100

seq1  TTGTATTTATGTTAAGTAAAAGCTGAATAATAATTTTAGATATTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTATGTTAAGTAAAAGCTGAATAATAATTTTAGATATTGTATAT  150

seq1  TTCTAGATTTCATTGTCAATAAATCACTGCCAATTTATGACTTTAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATTTCATTGTCAATAAATCACTGCCAATTTATGACTTTAACATT  200

seq1  TTCCTTCCAAGCATTTTTTAAAGTGGTTCTAAAAATAAGCATATTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCAAGCATTTTTTAAAGTGGTTCTAAAAATAAGCATATTTATCA  250

seq1  AGACAGGTGAGATGGCTCAGTTGGAAAAGAGATTGCTGTGAAAGTAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGAGATGGCTCAGTTGGAAAAGAGATTGCTGTGAAAGTAGCAT  300

seq1  TCCTAAACTCTAATCCTGAGCATCCACAGGAAGGAGAAACACAGATACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACTCTAATCCTGAGCATCCACAGGAAGGAGAAACACAGATACCT  350

seq1  ATTTCTGTAACCAAAGTTGCTTTAAAAAAAAAAAAAAAAAAGGAGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTAACCAAAGTTGCTTTAAAAAAAAAAAAAAAAAAGGAGCCAGG  400

seq1  ATGATCCCTATGGCTGGGCCAGACAGGCCAGCTCAGATGGTGAGCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCCTATGGCTGGGCCAGACAGGCCAGCTCAGATGGTGAGCTCTGG  450

seq1  GTTCAGTTAGAGGACCTGTCTCATAAAAATATGAGTGTGATGGAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTAGAGGACCTGTCTCATAAAAATATGAGTGTGATGGAGAAAGA  500

seq1  CATGGACATTGACGTCTGGCTCTTACATACACACACGCCCGCACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACATTGACGTCTGGCTCTTACATACACACACGCCCGCACACACAC  550

seq1  ATTCACACGTACACGTACATATACACATAAAAATTACATCTCTCTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACGTACACGTACATATACACATAAAAATTACATCTCTCTTCATA  600

seq1  TATATGTAGGTTTAGATATGTAAATTGTATAGGTAGATATGAATATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAGGTTTAGATATGTAAATTGTATAGGTAGATATGAATATAAAA  650

seq1  ATTTATACAGAGAGAAAACACATAAGTATTTGTTTAACGTGTTTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACAGAGAGAAAACACATAAGTATTTGTTTAACGTGTTTATTTTT  700

seq1  ATATACGTAAAGATAGATGAGTAAATAGATAGACAGACAGATAGATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGTAAAGATAGATGAGTAAATAGATAGACAGACAGATAGATACAT  750

seq1  AAATACATAGACACATAGATAGATTCATAGGTACATGGAGATGATAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAGACACATAGATAGATTCATAGGTACATGGAGATGATAGACA  800

seq1  ATTTTATAGCACATGGAGGCCTAAATCTAGGGAGAATTCTTCCTGTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGCACATGGAGGCCTAAATCTAGGGAGAATTCTTCCTGTATTC  850

seq1  CTTTGAGTCATTTTCAGTGTCAAGCCTGCAGTACCAGTCTCTCTCTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTCATTTTCAGTGTCAAGCCTGCAGTACCAGTCTCTCTCTCCAG  900

seq1  GCTTCTCTGGTGCCTGTGTGAACTGTTCTTTGCTTCTGTTAGACTGATAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTTCTCTGGTGCCTGTGTGAACTGTTCTTTGCTTCTGTTAGACTGAT-A  949

seq1  GCGCTTGAGTACGGCTATTCCGTTCAGCAGGGTATTTTCCCAGACTACTA  1000
      |||||||||||| |||| ||||||||||| ||||||||||||||||||||
seq2  GCGCTTGAGTAC-GCTA-TCCGTTCAGCA-GGTATTTTCCCAGACTACTA  996

seq1  AACTTTTGTGTTTTGAAACTCATTTTCTAATACATAACTGACCTTTCAAC  1050
      |||||||||||||||||||||||||||| |||||||||||||  ||||||
seq2  AACTTTTGTGTTTTGAAACTCATTTTCT-ATACATAACTGAC--TTCAAC  1043

seq1  TC-TCTAACCCTTAAACACATACACAATTTTCTTCCTCAAAATCATTCTT  1099
      || |||||||  |||||||||| |||  |||||| |||  ||||| || |
seq2  TCTTCTAACC--TAAACACATA-ACACATTTCTT-CTC--AATCA-TCCT  1086

seq1  GCTGTATCATTTGTGCTGTTTCTCTGGGTGAGTGGAGAAAGTA  1142
      ||||||||  ||| |||| |||| ||||||||||| |||||||
seq2  GCTGTATCCATTG-GCTG-TTCT-TGGGTGAGTGG-GAAAGTA  1125


seq1: chr6_79491288_79492404
seq2: B6Ng01-270A17.g_63_1176 (reverse)

seq1  CTGCT-CGCT-GTGGTTGCAGGCCTTCTCTTAGTTTGTTGCATAAGAACA  48
      ||||| |||| | ||||||| | | |||||||| |||||||||||  | |
seq2  CTGCTCCGCTGGGGGTTGCAAGGC-TCTCTTAG-TTGTTGCATAAAGAAA  48

seq1  CAC-CACATTTCACATCGTTTCTCCAGT-GTAAATTACTTCATACCACAT  96
      ||| |||| ||||||||| |||| |||| ||||||||| |||||||||| 
seq2  CACACACAATTCACATCG-TTCTGCAGTGGTAAATTAC-TCATACCACA-  95

seq1  TGTCAAGGAAAGGACTAGAAGAATTTGTTGAAGACCCAAAGAATTGGGGG  146
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCA--GAAAGGACTAGAAGAATTTGTTGAAGACCCAAAGAATTGGGGG  143

seq1  GAAGAAAAAGTCAAATCTGGAGCTTCATGGACCTGCCAGCAGCTGAGGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAGTCAAATCTGGAGCTTCATGGACCTGCCAGCAGCTGAGGAA  193

seq1  CAAAAGTAACGAAGACTTACTTAAGCTTTGGTATGTCCTTCTAAAGGAAA  246
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAAGTAACGAAGACTTACTTAAGCTTTGGTATGTCC-TCTAAAGGAAA  242

seq1  GAAATATGTTTCTAACTCTAGAGCAGGA-GGCCAAGCTACAGAGGTTGCC  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAATATGTTTCTAACTCTAGAGCAGGAGGGCCAAGCTACAGAGGTTGCC  292

seq1  AATGCCAAATCCAGAGCACTTAGAAAAGGTTATTGATTGCATGGATGCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAAATCCAGAGCACTTAGAAAAGGTTATTGATTGCATGGATGCCT  342

seq1  TAGATAGGTTGTCCAGGAGAGGGAAGATGCTCTAAAGCTTTTTCAGACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGGTTGTCCAGGAGAGGGAAGATGCTCTAAAGCTTTTTCAGACCT  392

seq1  GTCAAGAAAAACCCAGACCTGGTGCTTGGAGAAGAGATATCTTTGGACAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAAAAACCCAGACCTGGTGCTTGGAGAAGAGATATCTTTGGACAA  442

seq1  AACATCTGGCACAAATTCAAGCAGTGGCCTATACCTTGGTACCTAAGTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGGCACAAATTCAAGCAGTGGCCTATACCTTGGTACCTAAGTAA  492

seq1  AAGATACAATAGATGCTGTTCTTCACAATGCTTTATGTGGATTGCTTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAATAGATGCTGTTCTTCACAATGCTTTATGTGGATTGCTTTAT  542

seq1  CAGACTAAGAATTAAGAAATACTCCCACATTGAAGCAAGAAAGAGAAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAAGAATTAAGAAATACTCCCACATTGAAGCAAGAAAGAGAAGTT  592

seq1  TACAGAAAAAGATAGAAAAATTTCTCCAGGCAAAGTTCCCACATCTCTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAAGATAGAAAAATTTCTCCAGGCAAAGTTCCCACATCTCTCT  642

seq1  CAAGACCAGAAATCAAGTACTGTCTAAGATGAGATCCAAAAGTCCAGTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAGAAATCAAGTACTGTCTAAGATGAGATCCAAAAGTCCAGTTC  692

seq1  CATTGTTCTTAAAGCCTGTGTACTGATGTGAATATCTGTTAAACAGTTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTTAAAGCCTGTGTACTGATGTGAATATCTGTTAAACAGTTTA  742

seq1  TAAAGAAATGTTCTTGTCCAAAAAAGAAATGTAGGACATTGTTTTCTAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATGTTCTTGTCCAAAAAAGAAATGTAGGACATTGTTTTCTAGA  792

seq1  AGTATATATAAAACTTAATAATCAAATAGGAAAAATTATCAACTATAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATAAAACTTAATAATCAAATAGGAAAAATTATCAACTATAAGA  842

seq1  TAAAATAAATAATCAGAATACTTCAAATATATGATTAGGAATTTTCAAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAATCAGAATACTTCAAATATATGATTAGGAATTTTCAAAT  892

seq1  TAAAACATGGCACTTGCTATATTTGAAAAAAGCAAAGAGATTTGCTAACG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATGGCACTTGCTATATTTGAAAAAAGCAAAGAGATTTGCTAACG  942

seq1  GAATTTGAAGACAGATATGCATCCTTAGAAAATAATATTTGATCTTACCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAAGACAGATATGCATCCTTAGAAAATAATATTTGATCTTACCC  992

seq1  ATTCTGACTGGTGTGAGGTGGAATCTCAGGATTGTTTTGATTTGCATTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACTGGTGTGAGGTGGAATCTCAGGATTGTTTTGATTTGCATTTC  1042

seq1  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTACCATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTACCATTC  1092

seq1  GGTATTCCTCAGGTGAGAATTC  1117
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  1114


| Home | SequenceCutter | Blast | Download |