BAC Information

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BAC

Clone NameB6Ng01-270N24
Chromosome6 (Build37)
Map Location 16,045,932 - 16,047,117
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881, Tes, EG232599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270N24.bB6Ng01-270N24.g
ACCGA073103GA073104
length1,1841,165
definitionB6Ng01-270N24.b B6Ng01-270N24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctctgagccccattttttaatggggttgtttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatgttgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtcaaagtcacatagtccttgatgtaac
acttgtgatatgaacgctgttggcacattacatacattggctggaaaatt
tgcactcttgattcttgactaccatgctgcccagttccccctccacctcc
tactgctatacataaactttagaggtcaagaatatgccatggagttttag
atttttgaattgtggtgtaagtaagcaagtaagcacatttttctttgttt
tgttcctaggaagcacagaaacaaaagttaagctatatgctaacacattc
tatgagatgttattgtgaatacttcacttgttagttttatttgttagttt
tatacttttttctcttacaccattacctaatatctcatcaaaacccatga
acttcttgctgggctcattttatttcttctagaatctgcatagtaatttc
caagggaataggtgaagtaattagataactaagcacacagcaatgatgat
ttccaaattaacaaattcccaaataaatacacacacacaacaacaacagc
agcagcaacaacaaccacccatgaaatgttaatgtcttacatctttgcct
ggaatgttacatgtattaagtgggtaatgcttcctacttactttttcttt
tgttgaaaattgatatgttttatcacataatatatgccgattacatttct
cttctctatgccacttaggttctcccccacctcccttccaacatggtgga
tccattccatttcttatcacctcaataaaatcaaataggttttcaggcat
aataataaattaagaccattccagacccaggcgaggataacccattcgat
ggacaaaacgaataaaccgagaggctcaaaaata

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctgtcgaggatgtggagaaagagaaacactcctccattgttggtg
ggattgcagccttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactggaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaaccagtcagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccaggt
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtatccccgagatataagatacaatttgcaaaacacatgaaactgaa
gaagaaggaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggactcactttcttttctaatagtttcagtgtat
ctggttttatgtggaggttcttgatacactttgacttgagctttgttcaa
ggagataagaatggatcaatttgcattcttctacatgctaactgccagtt
taactagcaccatttgttgaaaacgctgtcttttttctactggatggctt
ttaactcctttgtcaaaggtcgattaccataggtgtgtgggttcatttct
gggtcttcagttctgttccagtgatatacctgcctgtctctgtaccaata
caatgcagttttatcattactgctctgtatacagctgagtcagatggtga
tctcagacctttattgttgagtatagttttcccctctctgaatgttctaa
ataagctgaattgtaattgcctttctaactctatgaagccattgcagtgc
aaaattgtaatgtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16045932_16047117
seq2: B6Ng01-270N24.b_47_1230

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATT  50

seq1  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGATGTTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGATGTTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCAAAGTCACATAGTCCTTGATGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCAAAGTCACATAGTCCTTGATGTAAC  350

seq1  ACTTGTGATATGAACGCTGTTGGCACATTACATACATTGGCTGGAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGATATGAACGCTGTTGGCACATTACATACATTGGCTGGAAAATT  400

seq1  TGCACTCTTGATTCTTGACTACCATGCTGCCCAGTTCCCCCTCCACCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTTGATTCTTGACTACCATGCTGCCCAGTTCCCCCTCCACCTCC  450

seq1  TACTGCTATACATAAACTTTAGAGGTCAAGAATATGCCATGGAGTTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTATACATAAACTTTAGAGGTCAAGAATATGCCATGGAGTTTTAG  500

seq1  ATTTTTGAATTGTGGTGTAAGTAAGCAAGTAAGCACATTTTTCTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAATTGTGGTGTAAGTAAGCAAGTAAGCACATTTTTCTTTGTTT  550

seq1  TGTTCCTAGGAAGCACAGAAACAAAAGTTAAGCTATATGCTAACACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAGGAAGCACAGAAACAAAAGTTAAGCTATATGCTAACACATTC  600

seq1  TATGAGATGTTATTGTGAATACTTCACTTGTTAGTTTTATTTGTTAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATGTTATTGTGAATACTTCACTTGTTAGTTTTATTTGTTAGTTT  650

seq1  TATACTTTTTTCTCTTACACCATTACCTAATATCTCATCAAAACCCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTTTCTCTTACACCATTACCTAATATCTCATCAAAACCCATGA  700

seq1  ACTTCTTGCTGGGCTCATTTTATTTCTTCTAGAATCTGCATAGTAATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGCTGGGCTCATTTTATTTCTTCTAGAATCTGCATAGTAATTTC  750

seq1  CAAGGGAATAGGTGAAGTAATTAGATAACTAAGCACACAGCAATGATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAATAGGTGAAGTAATTAGATAACTAAGCACACAGCAATGATGAT  800

seq1  TTCCAAATTAACAAATTCCCAAATAAATACACACACACAACAACAACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTAACAAATTCCCAAATAAATACACACACACAACAACAACAGC  850

seq1  AGCAGCAACAACAACCACCCATG-AATGTTAATGTCTTACATCTTTGCCT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCAGCAACAACAACCACCCATGAAATGTTAATGTCTTACATCTTTGCCT  900

seq1  GGAATGTTACATGTATTAAGT-GGTAATGCTTCCTACTTACTTTTTTCTT  948
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GGAATGTTACATGTATTAAGTGGGTAATGCTTCCTACTTAC-TTTTTCTT  949

seq1  TTGTTGAAAATTGATATGTTTTATCACATAATATATGCCGATTACATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTTGAAAATTGATATGTTTTATCACATAATATATGCCGATTACATTTC  999

seq1  TCTCTTTCTCTATTGCCACTTAGGTTCT-CCCCACCTCCCTTC--ACAT-  1044
      ||   ||||||| ||||||||||||||| ||||||||||||||  |||| 
seq2  TC---TTCTCTA-TGCCACTTAGGTTCTCCCCCACCTCCCTTCCAACATG  1045

seq1  GTGGATCCATTCCATTTC-TATCA-CTCATTAAAAATCAAATAGGGTTTT  1092
      |||||||||||||||||| ||||| |||| | ||||||||||| ||||||
seq2  GTGGATCCATTCCATTTCTTATCACCTCAAT-AAAATCAAATA-GGTTTT  1093

seq1  AAGGGATAATAATAAAATATAAAAGACCATCACAAAACAAAAGCAAAGAT  1142
       ||| ||||||||||| |    ||||||||  | | ||  | || | |||
seq2  CAGGCATAATAATAAATT----AAGACCAT-TCCAGACCCAGGCGAGGAT  1138

seq1  AACCACATCAGAATTGGACAAAACGAATAA--CCAGAGGC---AAAATA  1186
      |||| |||  ||  ||||||||||||||||  | ||||||   ||||||
seq2  AACC-CATTCGA--TGGACAAAACGAATAAACCGAGAGGCTCAAAAATA  1184


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