BAC Information

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BAC

Clone NameB6Ng01-270O09
Chromosome6 (Build37)
Map Location 79,463,186 - 79,464,219
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270O09.bB6Ng01-270O09.g
ACCGA073121GA073122
length1,2121,128
definitionB6Ng01-270O09.b B6Ng01-270O09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctcttgaaagcaactttccatactatggaagaaagtcagtt
tctgaagtggggacacaatcctttgaatcctgagtggtcaaatagtttta
cacaaattgttcagagatattctgccccagatacttattctgttccatct
gtttttgtatttgagcatttatagtaaatatattacaagtatttatttta
tactttttgtgccaaaaggaacattggtctgtttacttggctggtgatat
tgtttcaattttgtcatttggagttctaaatgtatcttgttttgagtaca
atcttattttctgatgtggatagcccaagacactctgaactcactttgca
tatttcattcccaagtcctgtaatgagccatttatccaagcagccctagc
ttcttttaatgaagaatggtgtaagaaacatatttagatgcaggatgagc
tcattttcctggaatcattgtttctagatccttgagacagaaatgcagat
gtgtgttgcgttcgttgcttttcacactttgctggaacaaaacacttgac
aagaagtgattaagggagaagcagattatctggcttacagtttaaagggg
gttggttatgatgctgatcacattggatctgaagccatgaaacagagtga
ttaagaagtggggtcagactaaaaatattagcattactttgtttcttcag
tatgcctacacgtcctaaatgttggccaacttcctgattcagaatagaaa
ataaagtattcaatcttataagcctgggtaggctgctttacattcatata
tattcacattcaaagcaatatatatgtcctatgcatataaattatataaa
tatgtactgttattaagctagggattattttttacttgattctgtcacta
gtatattgtcataagaattgtcataggttgtactctattttaacaaacta
tcattgggtatatacataaatcctctagttcagacttactgctatctatc
tcgttttgatttccccccacattttttattagatattttcttatataaca
tttcaatgctatcccgaagtccctatatcttcccttcggtctgctcccta
cccactcactccacttcttgactgcattccggtactgtgacaataaagtt
gctagaaaccagcttctttcaacgatggcacatagcaatgaggctcaatt
gcaagcatggac

gaattctgttgtctgtactgccacctatgaccatgagatcagtggtaaat
gctgataatggagactatgtggatatcactagtccatgctgttgccagaa
aaggttttaagtccatgatctgtgttcccctttcagactacaaaagacaa
ggaaactacttttgccatagtattgatgattccaaatccatagttgagaa
agaggtacatagaatacttctgggacaactcaaccacatccttaaaaaaa
gtaacagtgaaggcagaaagccatcaaagagaactttttgtgataataat
gctgaggtgtagctctctacaattgatgacttctgacagggatgttggca
gggaaggaatcagttttctttaagggactagtcgccagagtttgaccatg
ttcctatgagtatatgaccaacaaaaaaattgaactagtcattttgtttg
tttgtttttctttttcttcatttttaaaggtgggagtctgggtggtggca
tttaaaaaacctggaaggactgggaagagagagtgcttgggatccatgaa
ttgaaattcctaaaccattgataaaaatattatagaaaaaaaaaacacaa
aagggagcaaggctcagcaataaaaggaaatcaaaacacaaagttctgtc
tctgggaaagttgctacttaaaacagggactttttatattctatgacaga
atttaggcttctttatatacatatatctcttgtttcacaggtttgtaact
caagtttgtagtatgtacatttattccctaaaattatgatttataagaga
aataaaaatgtaaagaataaagtgtaggcttagaattttttgaaacctta
gataagatgtcccaaccagtaagaaggacactatgtttcatagcagcctt
atttataatagccaaagctgggaaagaacccagatgccccctcaacagag
gaatggatacaaaggatgtggtacatttacacgatggagtactacgcagc
tattaaaagattgatttatgaaatcctagtttaaatggatagacctgagg
gcatcattcctgagtgaggtaacccaatcacaaagactcaactgattgta
ctcccctgataggtggaattagccagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79463186_79464219
seq2: B6Ng01-270O09.g_163_1193

seq1  GAAAAGGTTTTAAGTCCATGATCTGTGTTCCCCTTTCAGACTACAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTTTTAAGTCCATGATCTGTGTTCCCCTTTCAGACTACAAAAGA  50

seq1  CAAGGAAACTACTTTTGCCATAGTATTGATGATTCCAAATCCATAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACTACTTTTGCCATAGTATTGATGATTCCAAATCCATAGTTGA  100

seq1  GAAAGAGGTACATAGAATACTTCTGGGACAACTCAACCACATCCTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTACATAGAATACTTCTGGGACAACTCAACCACATCCTTAAAA  150

seq1  AAAGTAACAGTGAAGGCAGAAAGCCATCAAAGAGAACTTTTTGTGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACAGTGAAGGCAGAAAGCCATCAAAGAGAACTTTTTGTGATAAT  200

seq1  AATGCTGAGGTGTAGCTCTCTACAATTGATGACTTCTGACAGGGATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGGTGTAGCTCTCTACAATTGATGACTTCTGACAGGGATGTTG  250

seq1  GCAGGGAAGGAATCAGTTTTCTTTAAGGGACTAGTCGCCAGAGTTTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAGGAATCAGTTTTCTTTAAGGGACTAGTCGCCAGAGTTTGACC  300

seq1  ATGTTCCTATGAGTATATGACCAACAAAAAAATTGAACTAGTCATTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTATGAGTATATGACCAACAAAAAAATTGAACTAGTCATTTTGT  350

seq1  TTGTTTGTTTTTCTTTTTCTTCATTTTTAAAGGTGGGAGTCTGGGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTCTTTTTCTTCATTTTTAAAGGTGGGAGTCTGGGTGGTG  400

seq1  GCATTTAAAAAACCTGGAAGGACTGGGAAGAGAGAGTGCTTGGGATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAAAACCTGGAAGGACTGGGAAGAGAGAGTGCTTGGGATCCAT  450

seq1  GAATTGAAATTCCTAAACCATTGATAAAAATATTATAGAAAAAAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAATTCCTAAACCATTGATAAAAATATTATAGAAAAAAAAAACA  500

seq1  CAAAAGGGAGCAAGGCTCAGCAATAAAAGGAAATCAAAACACAAAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGAGCAAGGCTCAGCAATAAAAGGAAATCAAAACACAAAGTTCT  550

seq1  GTCTCTGGGAAAGTTGCTACTTAAAACAGGGACTTTTTATATTCTATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGAAAGTTGCTACTTAAAACAGGGACTTTTTATATTCTATGAC  600

seq1  AGAATTTAGGCTTCTTTATATACATATATCTCTTGTTTCACAGGTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAGGCTTCTTTATATACATATATCTCTTGTTTCACAGGTTTGTA  650

seq1  ACTCAAGTTTGTAGTATGTACATTTATTCCCTAAAATTATGATTTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTTTGTAGTATGTACATTTATTCCCTAAAATTATGATTTATAAG  700

seq1  AGAAATAAAAATGTAAAGAATAAAGTGTAGGCTTAGAATTTTTTGAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAAATGTAAAGAATAAAGTGTAGGCTTAGAATTTTTTGAAACC  750

seq1  TTAGATAAGATGTCCCAACCAGTAAGAAGGACACTATG-TTCATAGCAGC  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTAGATAAGATGTCCCAACCAGTAAGAAGGACACTATGTTTCATAGCAGC  800

seq1  CTTATTTATAATAGCCAAAAGCT-GGAAAGAACCCAGATG-CCCCTCAAC  847
      |||||||||||||||| |||||| |||||||||||||||| |||||||||
seq2  CTTATTTATAATAGCC-AAAGCTGGGAAAGAACCCAGATGCCCCCTCAAC  849

seq1  AGAGGAATGGATACAAA-GATGTGGTACATTTACACGATGGAGTACTACG  896
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGGAATGGATACAAAGGATGTGGTACATTTACACGATGGAGTACTACG  899

seq1  CAGCTATTAAAAAGATTGAATTTATGAAATTCCTAG-TTAAATGGATAGA  945
      |||||||| ||||||||| |||||||||| |||||| |||||||||||||
seq2  CAGCTATT-AAAAGATTG-ATTTATGAAA-TCCTAGTTTAAATGGATAGA  946

seq1  CCTGGAGGGCATCA-TCCTGAGTGAGGTAACACAATCACAAAAGAACTCA  994
      ||| |||||||||| |||||||||||||||| ||||||||||   |||||
seq2  CCT-GAGGGCATCATTCCTGAGTGAGGTAACCCAATCACAAA--GACTCA  993

seq1  AATGATATGTACT-CACTGATAAGTGGATATTAGCCCAGAA  1034
      | |||| |||||| | |||||| ||||| ||||| ||||||
seq2  ACTGAT-TGTACTCCCCTGATAGGTGGA-ATTAG-CCAGAA  1031


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