BAC Information

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BAC

Clone NameB6Ng01-271B17
Chromosome6 (Build37)
Map Location 67,260,574 - 67,261,636
singlet/doubletsinglet
Overlap geneIl12rb2
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1
Downstream geneLOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B17.bB6Ng01-271B17.g
ACCGA073277GA073278
length1,1691,060
definitionB6Ng01-271B17.b B6Ng01-271B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaatcccagcaaccacatggtggctcacaaccatctgtaatggg
atcggatgccctcttctggtgtgtctgaagtcagctacagtgaatttatg
tataataataaataaatctaaaaaaaaaaaaaggtttgatgctcaatttg
acattacattcagagtcagcacactcccttgtgtcctgtctgcttatcac
ccaactttcgccgactccacgcacacctgctggaaccctgaatcccacag
attgagggggaccgactaagcctggtctgtggcacccaccatcagattac
acaatagaactataatgataataaagacaaccttgtgctggcataaaaac
agacagatgaccaatggaatggaatagaatacccagaaataaaaaaacaa
agctatgcctacttaagtttttacaaaggaagcaaaaacaaaccaacaaa
aatattcactgagggtgggggtgggaagcctatccaacaaatggtgcagg
caaaattggatttctgctacagaaaaatgaaattatatttttatatattt
cacactgcagaaaaaataaattcaaaatagatcaaagatcttaatataaa
acatgaaacactgaaacttctagcagaaaaaaaaaaaatagagtaccctt
cagaatactgaggtaggcaagaatgttctgaatagaacactaacagcacg
ggaaccatccccctagtatcaccagaggagactacatgaaaatggtttct
atagagcaaaggaaacaaccagcagagcagcagtctgggaggacagcctc
gcctgctgcactttgaacaagtgctaaataccagaatttaagaaaaattg
gcagaaaaataccaagcaaacaaaaaattgacaatcagcaaatgggtaaa
tgcactgaatagacactttgtaagaaagacacacaatgggccagtaatga
ttaataaaagtgttatgccttgaccataaatacatgcaatacagcctggt
cgagtgctatcattatttgacagcaatatggagaggagtggagaagacct
cgtcactgtggtggggggcgccaagtaaaacatcgttgtgaaattcagtt
tgcattctcaaacctaaatgaacggcattgaccatgcatcatgcttgcat
actcaagacctcaaaccat
gaattctttgttaagctctgcaccccattttttaatggggttatttgaat
ttttggagttcaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggaggcct
ttttgtcttatttctacttttaattggaggactagagtaaaatatctttc
tccttcagaagggttttctattatttttatgaatgagtattcacaggttt
cattacgacattttcatacttctttaccattctctttcatcatactcctt
cccattacccagttcttctttaatcaatcagacaagtaaaaccccaggga
taccactgtccccaggattcaaagaaaagacaaatatctaagaattagca
agtgagacatagctgtgcagttgacagtacagaagcacaagccttggaaa
acataaatagataataacatttatttcatttaataataataataataact
accccaaacaaaaaactggacaaaaaataaaataaccctttttagcttat
gctgactgaaaacctaagcataaaaggctaaactaaaggccaataggaga
agatgcaattgaatatacccatagccccagcatagtggaattttacaaac
aagactcaaaatcaaaactggggtaaatttaccaacacccatgtagctaa
caaagtggtcagaaaactgactgactacatttagagttgaagactgacgg
gtagtggtagagcatgcctttaatcctagcacttgggaggcagaggcagg
ctgatttctgagttcaaggccagccgggtctacagagtgagttccaggac
agccaaggctatacagagaaaccctgtctcgaaaaaccaaaaggaaaaaa
gaaaaaaaaaagagttgaagacttttccataatttaggatcatcaagcta
cctgcccaatcagaaaagggcagaaaataaagaaaaactgaagccaagtc
tactatatacagaaaacttcagtgagagttagcttcggatccaacaaaca
tgaaattcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67260574_67261636
seq2: B6Ng01-271B17.g_65_1124 (reverse)

seq1  TTGATTTTCATGTTTGTGGATTCCGAAGGCTAAACCTCTCACTGAGTTTT  50
      |||| |||||||||||| |  |||||| |||||  ||||||||||    |
seq2  TTGAATTTCATGTTTGTTGGATCCGAA-GCTAA--CTCTCACTGA--AGT  45

seq1  TTTCTGTTATTATTAGTAGACTTGGC-TCAG-TTTTCTTTA-TTTCTGCC  97
      |||||| |||   ||||||||||||| |||| ||||||||| ||||||||
seq2  TTTCTG-TAT--ATAGTAGACTTGGCTTCAGTTTTTCTTTATTTTCTGCC  92

seq1  CTTTTCTGATT-GGCAGGTAGCTTTGATGATCCT-AATTATGGAAAAGTC  145
      ||||||||||| |||||||||| ||||||||||| |||||||||||||||
seq2  CTTTTCTGATTGGGCAGGTAGC-TTGATGATCCTAAATTATGGAAAAGTC  141

seq1  TTCAACTC-TTTTTTTTTCTTTTTTCCTTTTGGTTTTTCGAGACAGGGTT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCTTTTTTTTTTCTTTTTTCCTTTTGGTTTTTCGAGACAGGGTT  191

seq1  TCTCTGTATAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCCGGCTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCCGGCTGG  241

seq1  CCTTGAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGTGCTAGGATTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGTGCTAGGATTAA  291

seq1  AGGCATGCTCTACCACTACCCGTCAGTCTTCAACTCTAAATGTAGTCAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCTCTACCACTACCCGTCAGTCTTCAACTCTAAATGTAGTCAGT  341

seq1  CAGTTTTCTGACCACTTTGTTAGCTACATGGGTGTTGGTAAATTTACCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTGACCACTTTGTTAGCTACATGGGTGTTGGTAAATTTACCCC  391

seq1  AGTTTTGATTTTGAGTCTTGTTTGTAAAATTCCACTATGCTGGGGCTATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGATTTTGAGTCTTGTTTGTAAAATTCCACTATGCTGGGGCTATG  441

seq1  GGTATATTCAATTGCATCTTCTCCTATTGGCCTTTAGTTTAGCCTTTTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTCAATTGCATCTTCTCCTATTGGCCTTTAGTTTAGCCTTTTAT  491

seq1  GCTTAGGTTTTCAGTCAGCATAAGCTAAAAAGGGTTATTTTATTTTTTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGTTTTCAGTCAGCATAAGCTAAAAAGGGTTATTTTATTTTTTGT  541

seq1  CCAGTTTTTTGTTTGGGGTAGTTATTATTATTATTATTAAATGAAATAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTTTGTTTGGGGTAGTTATTATTATTATTATTAAATGAAATAAA  591

seq1  TGTTATTATCTATTTATGTTTTCCAAGGCTTGTGCTTCTGTACTGTCAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATCTATTTATGTTTTCCAAGGCTTGTGCTTCTGTACTGTCAAC  641

seq1  TGCACAGCTATGTCTCACTTGCTAATTCTTAGATATTTGTCTTTTCTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCTATGTCTCACTTGCTAATTCTTAGATATTTGTCTTTTCTTTG  691

seq1  AATCCTGGGGACAGTGGTATCCCTGGGGTTTTACTTGTCTGATTGATTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGGGACAGTGGTATCCCTGGGGTTTTACTTGTCTGATTGATTAA  741

seq1  AGAAGAACTGGGTAATGGGAAGGAGTATGATGAAAGAGAATGGTAAAGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACTGGGTAATGGGAAGGAGTATGATGAAAGAGAATGGTAAAGAA  791

seq1  GTATGAAAATGTCGTAATGAAACCTGTGAATACTCATTCATAAAAATAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAATGTCGTAATGAAACCTGTGAATACTCATTCATAAAAATAAT  841

seq1  AGAAAACCCTTCTGAAGGAGAAAGATATTTTACTCTAGTCCTCCAATTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCTTCTGAAGGAGAAAGATATTTTACTCTAGTCCTCCAATTAA  891

seq1  AAGTAGAAATAAGACAAAAAGGCCTCCAACAGATTGGGAAAGGATCTTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAATAAGACAAAAAGGCCTCCAACAGATTGGGAAAGGATCTTTA  941

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTC  991

seq1  AAGAAGGTGAACTCCAAAAATTCAAATAACCCCATTAAAAAATGGGGTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTGAACTCCAAAAATTCAAATAACCCCATTAAAAAATGGGGTGC  1041

seq1  AGAGCTTAACAAAGAATTC  1063
      |||||||||||||||||||
seq2  AGAGCTTAACAAAGAATTC  1060