BAC Information

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BAC

Clone NameB6Ng01-271D05
Chromosome6 (Build37)
Map Location 109,125,871 - 109,126,969
singlet/doubletsinglet
Overlap genenone
Upstream geneSumf1, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271D05.bB6Ng01-271D05.g
ACCGA073349GA073350
length1,0971,176
definitionB6Ng01-271D05.b B6Ng01-271D05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcgcaagagtgcctctctagcagttctctgaagccttcccaa
acacttgctaccaacacaaacataagcctcctctcttctaattccaaagc
aaaagcagagactatgaagtatcaaaagcaaatagaaaagcacatcagat
attctttcagcgtggtgtgtttgcatggagacagcaagcactttgaagtc
ctaactcttttgagcatctttatcagtagttccccgggggtctgttcttt
tctatcttttaaaagacacatagcaccgtccaaaaaataattactgagct
ctgattatttcttagtctctggacttagatttgagggtatttcagccaat
aagatagatttagcctctgttcctatggagcttgtagtttcaggataaat
cagctatgaaacatcagttgtgtggtagggactttattcaaaacatcggc
aatccagggaaatcctccactgaaaaagacccttaaattaagctcatagg
atacataggtacataaatgatcaaatgaataaacaaccgactccctagta
actctccaatggcatgtatgtatcacagctacatttttttaaaccaaagg
cagtttaacaaggctaacagtactcatctttggaaaacaataaagcatag
tagcctacaactaatttctctcttaaaattggacttcaattttatcagta
gcccaattgataaaaatcccttgccacattagatctttgctctaggggta
ggaaagtactgttttgtttataggaaaccttagtttgtattgaagcttgg
gagatatggggggggtgctctataaagcatcctatatgtcagaaggagac
tgtaacactaacttaggtgctagagctaaaggttaggattcatcatataa
ctaacacctttgtctaaggaaacagcatataattagggaacattacatgg
gaattttctctacttatgagtgacaaataagcagggaacagatgagaatt
ttaaaagtcagagatgttcttgctaggaaaatgcactaaatgagaagagg
aatttttttcacattagccaatgatgatgagtagaacatagaggagg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccaatgttggtg
ggattgcaggcttgtacaaccactctggaaataagtctggcggttcctca
gaaaattggacaaagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaatgacacatgctccactat
gttcatagcagcattatttataatagccagaagctggaaacaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgtggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
tagaatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgctcctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaaccctgataccattgcatacactggcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtagccaggagctaaagggatctgcaccctat
agtggacacattatgaactaccagtaccccagagctctgactctagctgc
ataatgtatcaaagatgactagtccgcatcactgaaagagagcccattga
cacgctacctttatatgccagttacaggacgccaggctaaggggatgggt
ttggctagcagggagaatgacgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109125871_109126969
seq2: B6Ng01-271D05.b_42_1138 (reverse)

seq1  CCTCCTCT-TGTTCTACTCAATTCATCATT-GCTAATGTGAAAAAATTCC  48
      |||||||| |||||||||||  |||||||| ||||||||||||||| | |
seq2  CCTCCTCTATGTTCTACTCA--TCATCATTGGCTAATGTGAAAAAAATTC  48

seq1  CTCTTCCTCATTT-GTGCATTTTTTCCCCTAGC-AGACATTCTCTGACTT  96
      ||||| ||||||| |||||||||    |||||| |||   |||||||| |
seq2  CTCTT-CTCATTTAGTGCATTTT----CCTAGCAAGAACATCTCTGAC-T  92

seq1  TTTAAAATTCTCATCTGTTCCCTGCTTATTTTGTCACTCATAAGTAGAGA  146
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTAAAATTCTCATCTGTTCCCTGCTTA-TTTGTCACTCATAAGTAGAGA  141

seq1  AAATT-CCATGTAATGTT-CCTAATTATATGCTGTTTCCTTAGACAAAGG  194
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATTCCCATGTAATGTTCCCTAATTATATGCTGTTTCCTTAGACAAAGG  191

seq1  TGTTAGTTATATGATGAATCCTAACCTTTAGCTCTAGCACCTAAGTTAGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTATATGATGAATCCTAACCTTTAGCTCTAGCACCTAAGTTAGT  241

seq1  GTTACAGTCTCCTTCTGACATATAGGATGCTTTATAGAGCA-CCCCCCCA  293
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTACAGTCTCCTTCTGACATATAGGATGCTTTATAGAGCACCCCCCCCA  291

seq1  TATCTCCCAAGCTTCAATACAAACTAAGGTTTCCTATAAACAAAACAGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCAAGCTTCAATACAAACTAAGGTTTCCTATAAACAAAACAGTA  341

seq1  CTTTCCTACCCCTAGAGCAAAGATCTAATGTGGCAAGGGATTTTTATCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACCCCTAGAGCAAAGATCTAATGTGGCAAGGGATTTTTATCAA  391

seq1  TTGGGCTACTGATAAAATTGAAGTCCAATTTTAAGAGAGAAATTAGTTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTACTGATAAAATTGAAGTCCAATTTTAAGAGAGAAATTAGTTGT  441

seq1  AGGCTACTATGCTTTATTGTTTTCCAAAGATGAGTACTGTTAGCCTTGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTATGCTTTATTGTTTTCCAAAGATGAGTACTGTTAGCCTTGTT  491

seq1  AAACTGCCTTTGGTTTAAAAAAATGTAGCTGTGATACATACATGCCATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCTTTGGTTTAAAAAAATGTAGCTGTGATACATACATGCCATTG  541

seq1  GAGAGTTACTAGGGAGTCGGTTGTTTATTCATTTGATCATTTATGTACCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTACTAGGGAGTCGGTTGTTTATTCATTTGATCATTTATGTACCT  591

seq1  ATGTATCCTATGAGCTTAATTTAAGGGTCTTTTTCAGTGGAGGATTTCCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCCTATGAGCTTAATTTAAGGGTCTTTTTCAGTGGAGGATTTCCC  641

seq1  TGGATTGCCGATGTTTTGAATAAAGTCCCTACCACACAACTGATGTTTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCCGATGTTTTGAATAAAGTCCCTACCACACAACTGATGTTTCA  691

seq1  TAGCTGATTTATCCTGAAACTACAAGCTCCATAGGAACAGAGGCTAAATC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATTTATCCTGAAACTACAAGCTCCATAGGAACAGAGGCTAAATC  741

seq1  TATCTTATTGGCTGAAATACCCTCAAATCTAAGTCCAGAGACTAAGAAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATTGGCTGAAATACCCTCAAATCTAAGTCCAGAGACTAAGAAAT  791

seq1  AATCAGAGCTCAGTAATTATTTTTTGGACGGTGCTATGTGTCTTTTAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGCTCAGTAATTATTTTTTGGACGGTGCTATGTGTCTTTTAAAA  841

seq1  GATAGAAAAGAACAGACCCCCGGGGAACTACTGATAAAGATGCTCAAAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAAGAACAGACCCCCGGGGAACTACTGATAAAGATGCTCAAAAG  891

seq1  AGTTAGGACTTCAAAGTGCTTGCTGTCTCCATGCAAACACACCACGCTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGACTTCAAAGTGCTTGCTGTCTCCATGCAAACACACCACGCTGA  941

seq1  AAGAATATCTGATGTGCTTTTCTATTTGCTTTTGATACTTCATAGTCTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATCTGATGTGCTTTTCTATTTGCTTTTGATACTTCATAGTCTCT  991

seq1  GCTTTTGCTTTGGAATTAGAAGAGAGGAGGCTTATGTTTGTGTTGGTAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTTTGGAATTAGAAGAGAGGAGGCTTATGTTTGTGTTGGTAGC  1041

seq1  AAGTGTTTGGGAAGGCTTCAGAGAACTGCTAGAGAGGCACTCTTGCGAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGGGAAGGCTTCAGAGAACTGCTAGAGAGGCACTCTTGCGAGT  1091

seq1  GAATTC  1099
      ||||||
seq2  GAATTC  1097