BAC Information

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BAC

Clone NameB6Ng01-271F12
Chromosome6 (Build37)
Map Location 60,092,625 - 60,093,822
singlet/doubletsinglet
Overlap genenone
Upstream geneTigd2, Gprin3, EG634166, EG627108, EG434019, LOC671300
Downstream geneEG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271F12.bB6Ng01-271F12.g
ACCGA073450GA073451
length1,1781,207
definitionB6Ng01-271F12.b B6Ng01-271F12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctactaaaaatattgaaaaagtctatgaaagatgttaaattgat
tcttttaaaattagaccaatgacaagtacaaattagagcaaataataaat
attcttgttttccacatcagtaatataaaatccttacaagaaaatattac
caaaatccagtagtttttaaaactgtctccctctttgtttctcctcagag
cttcatgtactaagtgggagccttgatctcataagcagaaacatattaat
cactattgttggctatctggaataaaaatttgaggtcaattcaagattgt
aaaaatgaattattcataactgtcactaaagaatttctgtaaaccctacc
attattaaaaatcattactggctttaatcatggttaattgcattgatttt
aataatgcaaaagatttttcaataaagtaccagggcacatcctgcagtgg
aatttatcaggagttgtcattaaaaacgcatcaccataatatgaatgatt
acattttgggcatttctgtttttcattggatattttctttatttgcattt
caagtgttatccccatttctgatttctcccctagaactgtgcacccccac
ccactcatcccctcttctctcccacattcctactcttatattctgctaaa
ctggggcatcaagccttcatgggaccaagggcctcttctcccattgtatt
agtcactaatcttgagtcactggaattaaagtcggaggtcgattcaagat
tgtaaacacaatgtattcccaattgtcactcaggaagttctgtaaaccct
actgttattaaagtcattactggctttatgcaggattaattgcatttata
ttgcaaaagatttttcaataagacactcaatgcacatcttgcagtagaat
ttaacaggagccaacatcaaacactcattaatcaccctatcatgaatggt
aatattcaagcatttcaaaatgtagtgttacaattatataaaatatctaa
gttattaggtatttcaattacttttctgtgtggtatgtttctgccgtaaa
tttcaaaatatcttaagggacatgttgaagaatagctgtcagttaggtaa
ctgagtgaagacacagagtgcattcatggttcacgactattctcgacggt
gtgaagcctgatcagtgaaattccagca
gaattcaaattgatccattcttatccccttgaacaaagctaaagtctaag
tggatcaaggaactccatgtaaaaccagagaaactgaaacttttagagga
gaaagtttggaagagccacgaatatatgggtacaggggaaaaattcctta
ctagaacagcaatggcttgttctttaagatcaagaattgacaaatgggac
ctcaaaaaactgcaaagcttctgtaaggcaaagaacactgtcaataacac
aaagaggccaccaacagaatgggaaaagatctttaccaatcctaaatcag
ataggtgactaatacccaatacatacaaacaactcaagaagctggactcc
agaaaatcaaataaccctattaaaaatgcggtacagacctcaacattgaa
ttctcaactgaggaatatagaatagctgagaagaaactgaaaaaatattc
aacatccttaatcatcagggaaatgcaaatcaaaacaaacctgagattcc
atctcacaccagtcagaatggcttagatcaaaaagtcaggtgacagatga
tactggcaaggatgcagagaaagaggaacagtcttccattgctgctggaa
ttacaagtttgtacaaccactctagaaatcattgtggtggttccttagaa
aattgacatattaatacctgaagatccagtaatacctgtcctgggaatat
acctagaagatgttccaactagtaataagtagttatgcttcactatgagg
gacctagatattcctctgcagaggacagcaaatgtggtacattaacacaa
tggagtactatgcaactattaataagaatgaatttatgaaattcttaaca
aatggatggatctcgaagatatcatcctaagtaatgtaacccaaacacaa
aacaacacacatgatattcactcgcagttaagtggatattagcccagaag
tgcagaatacccgagatacaatttggaaaacacatgaaactcaaggagga
taccaaaggggtggggtacttatattcttttataggagggaaaaacaaaa
taccatgggaaagggatttacaggagacatagtttgggagccaccagact
ggaggaattgaccaatcaggagaactaacctaactaggagatcaatccat
ggataacccacaaatcccaagaacctatattgtgaggggagtaggtccca
ccacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60092625_60093822
seq2: B6Ng01-271F12.b_46_1223

seq1  GAATTCCTACTAAAAATATTGAAAAAGTCTATGAAAGATGTTAAATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTAAAAATATTGAAAAAGTCTATGAAAGATGTTAAATTGAT  50

seq1  TCTTTTAAAATTAGACCAATGACAAGTACAAATTAGAGCAAATAATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATTAGACCAATGACAAGTACAAATTAGAGCAAATAATAAAT  100

seq1  ATTCTTGTTTTCCACATCAGTAATATAAAATCCTTACAAGAAAATATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTTTTCCACATCAGTAATATAAAATCCTTACAAGAAAATATTAC  150

seq1  CAAAATCCAGTAGTTTTTAAAACTGTCTCCCTCTTTGTTTCTCCTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCAGTAGTTTTTAAAACTGTCTCCCTCTTTGTTTCTCCTCAGAG  200

seq1  CTTCATGTACTAAGTGGGAGCCTTGATCTCATAAGCAGAAACATATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTACTAAGTGGGAGCCTTGATCTCATAAGCAGAAACATATTAAT  250

seq1  CACTATTGTTGGCTATCTGGAATAAAAATTTGAGGTCAATTCAAGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGTTGGCTATCTGGAATAAAAATTTGAGGTCAATTCAAGATTGT  300

seq1  AAAAATGAATTATTCATAACTGTCACTAAAGAATTTCTGTAAACCCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATTATTCATAACTGTCACTAAAGAATTTCTGTAAACCCTACC  350

seq1  ATTATTAAAAATCATTACTGGCTTTAATCATGGTTAATTGCATTGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAAAATCATTACTGGCTTTAATCATGGTTAATTGCATTGATTTT  400

seq1  AATAATGCAAAAGATTTTTCAATAAAGTACCAGGGCACATCCTGCAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCAAAAGATTTTTCAATAAAGTACCAGGGCACATCCTGCAGTGG  450

seq1  AATTTATCAGGAGTTGTCATTAAAAACGCATCACCATAATATGAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCAGGAGTTGTCATTAAAAACGCATCACCATAATATGAATGATT  500

seq1  ACATTTTGGGCATTTCTGTTTTTCATTGGATATTTTCTTTATTTGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGGGCATTTCTGTTTTTCATTGGATATTTTCTTTATTTGCATTT  550

seq1  CAAGTGTTATCCCCATTTCTGATTTCTCCCCTAGAACTGTGCACCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTATCCCCATTTCTGATTTCTCCCCTAGAACTGTGCACCCCCAC  600

seq1  CCACTCATCCCCTCTTCTCTCCCACATTCCTACTCTTATATTCTGCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATCCCCTCTTCTCTCCCACATTCCTACTCTTATATTCTGCTAAA  650

seq1  CTGGGGCATCAAGCCTTCATGGGACCAAGGGCCTCTTCTCCCATTGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCATCAAGCCTTCATGGGACCAAGGGCCTCTTCTCCCATTGTATT  700

seq1  AGTCACTAATCTTGAGTCACTGGAATTAAAGTCGGAGGTCGATTCAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAATCTTGAGTCACTGGAATTAAAGTCGGAGGTCGATTCAAGAT  750

seq1  TGTAAACACAATGTATTCCCAATTGTCACTCAGGAAGTTCTGTAAACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACACAATGTATTCCCAATTGTCACTCAGGAAGTTCTGTAAACCCT  800

seq1  ACTGTTATTAAAGTCATTACTGGCTTTATGCAGGATTAATTGCATTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTAAAGTCATTACTGGCTTTATGCAGGATTAATTGCATTTATA  850

seq1  TTGCAAAAGATTTTTCAATAAGACACTCAATGCACATCTTGCAGTAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGATTTTTCAATAAGACACTCAATGCACATCTTGCAGTAGAAT  900

seq1  TTAACAGGAGCCAACATCAAACACTCATTAATCACCCTATCATGAATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGAGCCAACATCAAACACTCATTAATCACCCTATCATGAATGGT  950

seq1  AATATTTCAAGCATTTCAAAATGTAGGTGTTACAATTATATAAAATATCT  1000
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATA-TTCAAGCATTTCAAAATGTA-GTGTTACAATTATATAAAATATCT  998

seq1  AAGGTTATTAGGTATTTCAATTACTTTTCTGTTGTTGTATGTTTTCTGCC  1050
      || |||||||||||||||||||||||||||| ||| ||||| ||||||||
seq2  AA-GTTATTAGGTATTTCAATTACTTTTCTG-TGTGGTATG-TTTCTGCC  1045

seq1  GGTAAATTTCCAAAAATATCTTAAGGGGACATGTTGAAGGATAGCCTTGT  1100
       |||||||||  |||||||||||| |||||||||||||| |||||  |||
seq2  -GTAAATTTC--AAAATATCTTAA-GGGACATGTTGAAGAATAGC--TGT  1089

seq1  CAGGTTAGGGTAAACTGAGGTGAGGACACAGAGTTGGCAATTCATTGGTC  1150
      || ||||||   |||||| |||| ||||||||||  || |||||| | ||
seq2  CA-GTTAGG--TAACTGA-GTGAAGACACAGAGT--GC-ATTCATGGTTC  1132

seq1  AACAGACTATTCTCAGAGGGGGTGAAGCCTGATTCAGTGAA--TCCAGCA  1198
      |   |||||||||| || || ||||||||||| ||||||||  |||||||
seq2  A--CGACTATTCTC-GACGGTGTGAAGCCTGA-TCAGTGAAATTCCAGCA  1178