BAC Information

Click to search

BAC

Clone NameB6Ng01-271N10
Chromosome6 (Build37)
Map Location 109,734,153 - 109,735,277
singlet/doubletsinglet
Overlap genenone
Upstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271N10.bB6Ng01-271N10.g
ACCGA073814GA073815
length1,0131,110
definitionB6Ng01-271N10.b B6Ng01-271N10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagtttagttctacaccccattttttgattggattgtttgatt
ttggtgattaaattcttgagtttttattattttggatattagccctctgt
cggatgtggggttagtgaagatttttcccaatgagtaggtagctgatttg
tcttatcgactatgtcttttgcctcacagaagatttccagttttatgagg
tcccatttatcaattcttgatcttagagcataatgcattgagctctgttt
aggaaatttccccctgtgccaaggagttcaaggctctttcctactttctc
ttcttttagattcattgtatctggttttatgttgacattcttgattcact
tgaacttgagatttgtacaaagtgacaaatatgggtttattttcattctt
ctacatacagatagccagagggtacttagagagcccacctccagcagaaa
gacaggacatcacgtgagggatggggttgccatcccacaatcacaccccg
acccataattgtttctgtctgaaagaattacaaggatagaaatggagagg
agcctgaggaaaagaaggtccagtgacaaacccaaagtgggatccagctc
aagggaaagttccaatgcctgacactattactgaggctatggaatgctca
caaaaagggatctatcatgactgccctctgaaaaagacccaataagcagc
tgaaagagtcagatacagttacttgtacccaaccaatggacagcagctga
tcccttttgttgaattcgagaaggctgaaagaagctgaggagaaagggca
aatgtgtaggaggaccatttaattaatctggatccccgagattttgaaac
actgaacccaccaaacagacagcatacaccagctgatatgaggcccctaa
catacatacagtagaggacttccaggtctgttcattcagagatgaagcac
ctaaccctcaagagaactggaggcctcagggtgtttagaggtcatgtgga
gttgggctggggc

gaattcttggagatttttttctttcttgtactttttaatctaaagagtta
ttatttgtgacagctgctgacagaagttaacaaggcacttgttttgtatg
accttgccagttttgatttccaggttttattgtatataatacttatgaat
atatatatatatatatatatatacatatatgttagcagagtgactaataa
ctaaaataaacatgctcaaaaatatccatggggtatctattatgtttatg
aatatttagtagtttctgacagccagtttgaggaaagactggttcaaatt
ctgctcactataaatttatgaataattaacctcatatttcaaaacttgtg
attttttgcaatatcaatgtattatcttatcactggggaacaatacttgt
taacctagagattcggagttgaatttgccagattatcagatatttttgct
tatatttgagattattaaaatttagtcttgaaaggctaaatgagaacttg
agaatcatagtggtggcagacaatatgacgttccttgaaaggcagtcaac
attcacaacaaaaggcctggttatctaagtcctagtgggatggatgcaga
tttttgttgcagctagctagattcctttactaatacttattttccttcta
tttctgaaaaaaaatttaaaaaaatccacaacttttagaaattatagggc
aggaagaaagagttatcacatctcacgcattacattttgtaagaagtata
cctaataattaaaatgtcagttggagaagcagaggaatgaaagtacatta
ctaatatggggacagcatagacttttatattatgtaatctttgggcattg
gaaaaaagcagtgagcaagggcttctgggaataaaagatatctgtactaa
ttctggttagtagtgccagatgtgtgctgagggagggaggagaaaagatg
tgtacctgctgtaagatgaatttgtaaatttatcaattaagcattcctac
aacatgatctctgtcttcagccttaagtcctgctatagatcagagtcatc
aaattatatacttcatatgagtagtttcttcagaagaaataaaaatgcag
acagttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109734153_109735277
seq2: B6Ng01-271N10.g_64_1173

seq1  GAATTCTTGGAGATTTTTTTCTTTCTTGTACTTTTTAATCTAAAGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGATTTTTTTCTTTCTTGTACTTTTTAATCTAAAGAGTTA  50

seq1  TTATTTGTGACAGCTGCTGACAGAAGTTAACAAGGCACTTGTTTTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTGACAGCTGCTGACAGAAGTTAACAAGGCACTTGTTTTGTATG  100

seq1  ACCTTGCCAGTTTTGATTTCCAGGTTTTATTGTATATAATACTTATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ACCTTGCCAGTTTTGATTTCCAGGTTTTATTGTATATAATACTTATGA--  148

seq1  ATATATATATATATATATATATATACATATATGTTAGCAGAGTGACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATACATATATGTTAGCAGAGTGACTAAT  198

seq1  AACTAAAATAAACATGCTCAAAAATATCCATGGGGTATCTATTATGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATAAACATGCTCAAAAATATCCATGGGGTATCTATTATGTTTA  248

seq1  TGAATATTTAGTAGTTTCTGACAGCCAGTTTGAGGAAAGACTGGTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTAGTAGTTTCTGACAGCCAGTTTGAGGAAAGACTGGTTCAAA  298

seq1  TTCTGCTCACTATAAATTTATGAATAATTAACCTCATATTTCAAAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCACTATAAATTTATGAATAATTAACCTCATATTTCAAAACTTG  348

seq1  TGATTTTTTGCAATATCAATGTATTATCTTATCACTGGGGAACAATACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTGCAATATCAATGTATTATCTTATCACTGGGGAACAATACTT  398

seq1  GTTAACCTAGAGATTCGGAGTTGAATTTGCCAGATTATCAGATATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTAGAGATTCGGAGTTGAATTTGCCAGATTATCAGATATTTTTG  448

seq1  CTTATATTTGAGATTATTAAAATTTAGTCTTGAAAGGCTAAATGAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTGAGATTATTAAAATTTAGTCTTGAAAGGCTAAATGAGAACT  498

seq1  TGAGAATCATAGTGGTGGCAGACAATATGACGTTCCTTGAAAGGCAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCATAGTGGTGGCAGACAATATGACGTTCCTTGAAAGGCAGTCA  548

seq1  ACATTCACAACAAAAGGCCTGGTTATCTAAGTCCTAGTGGGATGGATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACAACAAAAGGCCTGGTTATCTAAGTCCTAGTGGGATGGATGCA  598

seq1  GATTTTTGTTGCAGCTAGCTAGATTCCTTTACTAATACTTATTTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTGCAGCTAGCTAGATTCCTTTACTAATACTTATTTTCCTTC  648

seq1  TATTTCTGAAAAAAAATTTAAAAAAATCCACAACTTTTAGAAATTATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGAAAAAAAATTTAAAAAAATCCACAACTTTTAGAAATTATAGG  698

seq1  GCAGGAAGAAAGAGTTATCACATCTCACGCATTACATTTTGTAAGAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGAAAGAGTTATCACATCTCACGCATTACATTTTGTAAGAAGTA  748

seq1  TACCTAATAATTAAAATGTCAGTTGGAGAAGCAGAGGAATGAAAGTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATAATTAAAATGTCAGTTGGAGAAGCAGAGGAATGAAAGTACAT  798

seq1  TACTAATATGGGGACAGCATAGACTTTTATATTATGTAATCTTTGGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATATGGGGACAGCATAGACTTTTATATTATGTAATCTTTGGGCAT  848

seq1  TGGAAAAAAGCAGTGAGCAAGGGCTTCTGGGAATAAAAGATATCTGTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAGCAGTGAGCAAGGGCTTCTGGGAATAAAAGATATCTGTACT  898

seq1  AATTCTGGTTAGTAGTGCCAGATGTGTGCTGAGGGAGGGAGGAGAAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTCTGGTTAGTAGTGCCAGATGTGTGCTGAGGGAGGGAGGAGAAAAG-  947

seq1  ATGTGTACCTGCTGTTAAGATGAATTTGTAAATTTATCAATTAAGCATTT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  ATGTGTACCTGCTG-TAAGATGAATTTGTAAATTTATCAATTAAGCA-TT  995

seq1  CCTACCAACATTGATCTCTGTCTTTCAGCCTTAAAGTCCTGCTTATAGAT  1050
      |||| ||||| ||||||||||| ||||||||| ||||||||| |||||||
seq2  CCTA-CAACA-TGATCTCTGTC-TTCAGCCTT-AAGTCCTGC-TATAGAT  1040

seq1  CAGGAGTCAATCAAATTATATACCTCATATGAGGTAGTTTCTTCAAGAAG  1100
      || ||||| |||||||||||||| |||||||| ||||||||||| |||||
seq2  CA-GAGTC-ATCAAATTATATACTTCATATGA-GTAGTTTCTTC-AGAAG  1086

seq1  AATAAAAAATGCAGAACAGTTGAAA  1125
      ||  |||||||||| ||||||||||
seq2  AAATAAAAATGCAG-ACAGTTGAAA  1110


| Home | SequenceCutter | Blast | Download |