BAC Information

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BAC

Clone NameB6Ng01-271P10
Chromosome6 (Build37)
Map Location 16,488,777 - 16,623,620
singlet/doubletdoublet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271P10.bB6Ng01-271P10.g
ACCGA073909GA073910
length569655
definitionB6Ng01-271P10.b B6Ng01-271P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,488,777 - 16,489,351)(16,623,046 - 16,623,620)
sequence
tttggtggatatttgtcaaactcagtatttgcatatgcatttgtgtgttc
taaaagttaacacagaaattgagaacgacgacaaacttatttccagcaac
taaaaaaaaaatcctgtgatgcatatttacatcgtggaagactgtttttt
aagctgtttcttatcgcttaatattagccagaaattatttttattgacat
tctagagggaatgtttctatgtctgtttctatgtacctggtctatgacaa
tctacacatcagaaatgcagttccaggaaacaccgactccagccatccaa
tgtgcaagtgtttatcaccctaagagtcacatgcttaagagaatggttac
tcatgcctgtcaatttagcatgctgttcttcttatttcatttaagacaaa
atgttgatgactgacaccagtgtctttgagatacataaagtagagatggt
tgagcacattttgcttcagtgagagattctgatatgcaaaataaccatct
gaacatatataattgaatgcctcaagtgaatgtattaagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtg
gaattccataaaaaaagaaaaaaaacaacaacagaagttataatatataa
aaaaggattggaaatgctcagacaaaacactatgagacaaagaccctcta
aagactcctctaaagaggtggattttgttgttgttgttgttgttttggtt
tgtttttttgtttgtgttggggtttgccttctgtgaggagtatgtgtgag
gccgggggggcggtgggacggcattgggaaacctaattttttatttgtga
ttagttataagttggctattgcttctgggttagggacgagatcatgctca
cttcccctctcagtgctgggaccaccatcaggtgtagacacctgcagatt
ctgtgcatgctaacagaggctcttccagtttatatgtgtttcagacctgt
cgtgtttaggaggccttgattcctttgagtcctccatcccatcagacgct
tagaatcttactgcctcctttctggaaatgtctttgattaaatttgaatt
cagtgcaaagggatattggtctatataaaaccacttttgcctaataatga
aattcatagtaataggtattttaaaaatattgttcaactctaaattttaa
tttcagtgatatttgttaagaaaaaaaaaaaaacaaagcaaaaaaagttg
cttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16488777_16489351
seq2: B6Ng01-271P10.b_49_623

seq1  GAATTCTTTGGTGGATATTTGTCAAACTCAGTATTTGCATATGCATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTGGATATTTGTCAAACTCAGTATTTGCATATGCATTTGT  50

seq1  GTGTTCTAAAAGTTAACACAGAAATTGAGAACGACGACAAACTTATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAAAGTTAACACAGAAATTGAGAACGACGACAAACTTATTTCC  100

seq1  AGCAACTAAAAAAAAAATCCTGTGATGCATATTTACATCGTGGAAGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAAAAAAAAAATCCTGTGATGCATATTTACATCGTGGAAGACTG  150

seq1  TTTTTTAAGCTGTTTCTTATCGCTTAATATTAGCCAGAAATTATTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGCTGTTTCTTATCGCTTAATATTAGCCAGAAATTATTTTTAT  200

seq1  TGACATTCTAGAGGGAATGTTTCTATGTCTGTTTCTATGTACCTGGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTAGAGGGAATGTTTCTATGTCTGTTTCTATGTACCTGGTCTA  250

seq1  TGACAATCTACACATCAGAAATGCAGTTCCAGGAAACACCGACTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCTACACATCAGAAATGCAGTTCCAGGAAACACCGACTCCAGCC  300

seq1  ATCCAATGTGCAAGTGTTTATCACCCTAAGAGTCACATGCTTAAGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGTGCAAGTGTTTATCACCCTAAGAGTCACATGCTTAAGAGAAT  350

seq1  GGTTACTCATGCCTGTCAATTTAGCATGCTGTTCTTCTTATTTCATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTCATGCCTGTCAATTTAGCATGCTGTTCTTCTTATTTCATTTAA  400

seq1  GACAAAATGTTGATGACTGACACCAGTGTCTTTGAGATACATAAAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATGTTGATGACTGACACCAGTGTCTTTGAGATACATAAAGTAGA  450

seq1  GATGGTTGAGCACATTTTGCTTCAGTGAGAGATTCTGATATGCAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGAGCACATTTTGCTTCAGTGAGAGATTCTGATATGCAAAATAA  500

seq1  CCATCTGAACATATATAATTGAATGCCTCAAGTGAATGTATTAAGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGAACATATATAATTGAATGCCTCAAGTGAATGTATTAAGTGTGT  550

seq1  GTGTGTGTGTGTGTGTGTGTGTGTG  575
      |||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTG  575

seq1: chr6_16623046_16623620
seq2: B6Ng01-271P10.g_144_722 (reverse)

seq1  CTAAGC-ACTTTTTTTGCTTTTGTTTTTTTTTTTTCTTAACAAATATCAC  49
      |||||| ||||||||||||||  |||||||||||||||||||||||||||
seq2  CTAAGCAACTTTTTTTGCTTTGTTTTTTTTTTTTTCTTAACAAATATCAC  50

seq1  TGAA--TTAAATTTAGAGTTGAACAATATTTTTAAAATACCTATTACTAT  97
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAAATTTAGAGTTGAACAATATTTTTAAAATACCTATTACTAT  100

seq1  GAATTTCATTTTTAGGC-AAAGTGGTTTTATATAGACCAATATCCCTTTG  146
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GAATTTCATTATTAGGCAAAAGTGGTTTTATATAGACCAATATCCCTTTG  150

seq1  CACTGAATTCAAATTTAATCAAAGACATTTCCAGAAAGGAGGCAGTAAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATTCAAATTTAATCAAAGACATTTCCAGAAAGGAGGCAGTAAGA  200

seq1  TTCTAAGCGTCTGATGGGATGGAGGACTCAAAGGAATCAAGGCCTCCTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCGTCTGATGGGATGGAGGACTCAAAGGAATCAAGGCCTCCTAA  250

seq1  ACACGACAGGTCTGAAACACATATAAACTGGAAGAGCCTCTGTTAGCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACAGGTCTGAAACACATATAAACTGGAAGAGCCTCTGTTAGCATG  300

seq1  CACAGAATCTGCAGGTGTCTACACCTGATGGTGGTCCCAGCACTGAGAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCTGCAGGTGTCTACACCTGATGGTGGTCCCAGCACTGAGAGG  350

seq1  GGAAGTGAGCATGATCTCGTCCCTAACCCAGAAGCAATAGCCAACTTATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGCATGATCTCGTCCCTAACCCAGAAGCAATAGCCAACTTATA  400

seq1  ACTAATCACAAATAAAAAATTAGGTTTCCCAATGGAGTCTCAGAGTCTCA  446
      ||||||||||||||||||||||||||||||||||  ||| ||  | | | 
seq2  ACTAATCACAAATAAAAAATTAGGTTTCCCAATGCCGTCCCACCGCCCCC  450

seq1  CTGGGATTACAACTACTCCTAAGAGAAGGCAAAACAAAAAACAAACAAAA  496
      | ||  | |||  ||||||| | |||||||||| |  || ||||||||||
seq2  CCGGCCTCACACATACTCCTCACAGAAGGCAAACCCCAACACAAACAAAA  500

seq1  AAACAAACCAAAACAACAACAACAACAACAAAATCCACCTCTTTAGAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCAAAACAACAACAACAACAACAAAATCCACCTCTTTAGAGGA  550

seq1  GTCTTTAGAGGGTCTTTGTCTCATAGTGT  575
      |||||||||||||||||||||||||||||
seq2  GTCTTTAGAGGGTCTTTGTCTCATAGTGT  579