BAC Information

Click to search

BAC

Clone NameB6Ng01-272D01
Chromosome6 (Build37)
Map Location 44,541,739 - 44,542,848
singlet/doubletsinglet
Overlap genenone
Upstream geneTpk1, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272D01.bB6Ng01-272D01.g
ACCGA074079GA074080
length1,1031,160
definitionB6Ng01-272D01.b B6Ng01-272D01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttaatgatgctttgaaaaatactttgcatgtgactgtgattc
acagcatgggtttccctttgaagcctactgtataatatttatgcttacag
gagttttcatgcagtttattccttaaattgcctcaagatagaatctaaca
cttcaatgtccaaaccattgtaggccccctctatatttttgtaaataaat
tagttctcttcaagtcacaactgtgatagcttgtcaaaaattaaatttag
tatctattcttagtgtcataattatagtatgaggtgaaaaagagaagcta
tttcatttgattagtattgccctaataaaaaaaagtagcattttgacaaa
ctcatttttttttcaaagaaagacgtatttaacttccaactgttattttg
cggagaatattattgtctattcactgaacacagcaagagccactgttaac
aacatgcttattttgcagccattgtacagcttttgagcttgttttaaatg
atcagccagttttacataaaattcccaacaggaaaagcttagacctgttg
taaccattatctccatacatgttatatttaatcatatttttcttccatga
tgattaattaatcttataataggtaaatggttcttttctataattgaagg
cagcatactgctagaatacgtatggtttcttttaacattgttggattttt
gcctgccaattttttcttttactttttcatgtgaatttacaagaaattaa
taaatggatgacatttttcaattaatgctctataaacttaaatattctca
attgtttaaatgaagtgaagagagtctgggataatattattgaaatcacc
attttgttgatcagttcttagcttaccaagtaaaaattacaataatgcat
acagttattttgtacttggattagaaagccttgtgaagaaatgtgtcagg
acacatttcttctgttgataatttcaatcggacttgcttcagcatttaca
agctgagataggtctttttctagtgctgagtgactgatgagcaagcaaag
taattggctcttttgtgtaccagtcagatgccaagaatatcttagtcaat
ttg

gaattctcacctgaggaataccgaatggtagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggggtggatgtggagaaagaggaacattcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtgttacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
attgatggacctggagggcatcatcctgagtgaggttacacaatcacaaa
ggaagtcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtgggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagaacccaggagctaagggatctgccaccctata
gtgaacaacatatgaactaccagtatccccgagctctgactctagctgca
tatgtatcaagattgctagtgcaatcactgaaagaaagtcatgacacgca
attttatgccagttacagggacgctagtcaaatggcagattgcgctggct
ctaggacgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44541739_44542848
seq2: B6Ng01-272D01.b_44_1146

seq1  GAATTCATTTAATGATGCTTTGAAAAATACTTTGCATGTGACTGTGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATGATGCTTTGAAAAATACTTTGCATGTGACTGTGATTC  50

seq1  ACAGCATGGGTTTCCCTTTGAAGCCTACTGTATAATATTTATGCTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGGGTTTCCCTTTGAAGCCTACTGTATAATATTTATGCTTACAG  100

seq1  GAGTTTTCATGCAGTTTATTCCTTAAATTGCCTCAAGATAGAATCTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCATGCAGTTTATTCCTTAAATTGCCTCAAGATAGAATCTAACA  150

seq1  CTTCAATGTCCAAACCATTGTAGGCCCCCTCTATATTTTTGTAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTCCAAACCATTGTAGGCCCCCTCTATATTTTTGTAAATAAAT  200

seq1  TAGTTCTCTTCAAGTCACAACTGTGATAGCTTGTCAAAAATTAAATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCTTCAAGTCACAACTGTGATAGCTTGTCAAAAATTAAATTTAG  250

seq1  TATCTATTCTTAGTGTCATAATTATAGTATGAGGTGAAAAAGAGAAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTCTTAGTGTCATAATTATAGTATGAGGTGAAAAAGAGAAGCTA  300

seq1  TTTCATTTGATTAGTATTGCCCTAATAAAAAAAAGTAGCATTTTGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGATTAGTATTGCCCTAATAAAAAAAAGTAGCATTTTGACAAA  350

seq1  CTCATTTTTTTTTCAAAGAAAGACGTATTTAACTTCCAACTGTTATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTTTTCAAAGAAAGACGTATTTAACTTCCAACTGTTATTTTG  400

seq1  CGGAGAATATTATTGTCTATTCACTGAACACAGCAAGAGCCACTGTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAATATTATTGTCTATTCACTGAACACAGCAAGAGCCACTGTTAAC  450

seq1  AACATGCTTATTTTGCAGCCATTGTACAGCTTTTGAGCTTGTTTTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTTATTTTGCAGCCATTGTACAGCTTTTGAGCTTGTTTTAAATG  500

seq1  ATCAGCCAGTTTTACATAAAATTCCCAACAGGAAAAGCTTAGACCTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCAGTTTTACATAAAATTCCCAACAGGAAAAGCTTAGACCTGTTG  550

seq1  TAACCATTATCTCCATACATGTTATATTTAATCATATTTTTCTTCCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTATCTCCATACATGTTATATTTAATCATATTTTTCTTCCATGA  600

seq1  TGATTAATTAATCTTATAATAGGTAAATGGTTCTTTTCTATAATTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTAATCTTATAATAGGTAAATGGTTCTTTTCTATAATTGAAGG  650

seq1  CAGCATACTGCTAGAATACGTATGGTTTCTTTTAACATTGTTGGATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACTGCTAGAATACGTATGGTTTCTTTTAACATTGTTGGATTTTT  700

seq1  GCCTGCCAATTTTTTCTTTTACTTTTTCATGTGAATTTACAAGAAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAATTTTTTCTTTTACTTTTTCATGTGAATTTACAAGAAATTAA  750

seq1  TAAATGGATGACATTTTTCAATTAATGCTCTATAAACTTAAATATTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATGACATTTTTCAATTAATGCTCTATAAACTTAAATATTCTCA  800

seq1  ATTGTTTAAATGAAGTGAAGAGAGTCTGGGATAATATTATTGAAATCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAAATGAAGTGAAGAGAGTCTGGGATAATATTATTGAAATCACC  850

seq1  ATTTTGTTGATCAGTTCTTAGCTTACCAAGTAAAAATTACAATAATGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGATCAGTTCTTAGCTTACCAAGTAAAAATTACAATAATGCAT  900

seq1  ACAGTTATTTTGTACTTGGATTAGAAAGCCTTGTGAAGAAATGTGTCAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGTTATTTTGTACTTGGATTAGAAAGCCTTGTGAAGAAATGTGTCA-G  949

seq1  GACACATTTCTTCTGTTGATAATTTCAATCGGACTTTGCTTCAGCATTTA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACACATTTCTTCTGTTGATAATTTCAATCGGAC-TTGCTTCAGCATTTA  998

seq1  CAAGCTGAGATAGGTCTTTTCTTAGGTGCTGAGTGACTGAGTGAGCAAGG  1050
      ||||||||||||||||||||  || ||||||||||||||| ||||||| |
seq2  CAAGCTGAGATAGGTCTTTTTCTA-GTGCTGAGTGACTGA-TGAGCAA-G  1045

seq1  CAAAGGTAATTGGCTC-TTTGTGTACCAGGTCAGATTGCAAAGAATATC-  1098
      |||| ||||||||||| ||||||||||| |||||| ||| ||||||||| 
seq2  CAAA-GTAATTGGCTCTTTTGTGTACCA-GTCAGA-TGCCAAGAATATCT  1092

seq1  TAGTCAAATTTG  1110
      ||||| ||||||
seq2  TAGTC-AATTTG  1103


| Home | SequenceCutter | Blast | Download |