BAC Information

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BAC

Clone NameB6Ng01-272F19
Chromosome6 (Build37)
Map Location 103,950,579 - 104,082,172
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272F19.bB6Ng01-272F19.g
ACCGA074209GA074210
length1,0311,124
definitionB6Ng01-272F19.b B6Ng01-272F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,950,579 - 103,951,156)(104,081,045 - 104,082,172)
sequence
gaattcaaaataaatagaaaacaaaaaggatcaatgtattaatatggcag
gatcatgaggctgtcactcaggcatgtcattttttattaggtatttattt
acatttgaaatgttgttctcatttctggtttcacctcctaaaaccaccta
tcccctaccccattcccctgctcaccaacctacccacacctgcttcctgg
ctctatcattcccctaccctagggcatagagccttcacaggaacaagggc
ctctcctcccattgatgactgactaggacaccctctgctacatatacagc
tagaaacacgagctctgtggttactggttagttcatattgttcctcctat
aaggctgctaacctcttcagctccttaggtactttctctagctccttcat
tgaagacactgtgctcagttcaatgggaaactgcaaggatctacctctgt
aattgtcaggcactggtgaaagctctctggagacagctatgccaggcttc
tgtcaataagcacttgttggaatccacagaagtgtctgggtttggtgatt
gtatatggaatgaatcactgggtagggcagtctcagaatggtcaatcctt
cagtctctgctccacactttgtctctgtaattccttccatgggttttttt
gttcttccttctaagaaggatggaaggatccaaactttggttttccttct
tcttgagtttcacatggtttgtgaattgtatcttgggtattccgagcttc
tgggcaaataaccgcttatcagtgagtacatgccatgtgtgttcttttgt
gattgcattacctcactcaggatgatattttctagtttcatgcatttgcc
taagaatttcatgaattcattgtttttattagcagagtagtactccattg
tgtgaatgtaccacattttctataaccattcctctgtttagggacctctg
gattctttctagcttctggctattacaaataatgctgctatgaacatagt
gaacatgtgtcctttattgcaggtaggagca

gaattccaggaaaggaagagactacaatggctgtgtctggagtttggcat
ctctcagatactaggatccattccttccctagagtctccgtgtatgcaat
gattaatcaatattcagagagtaataatattttcttgttagttttcagaa
aggaaaactgcattgttctgaaaagtgaattccacttctttgggaagaac
tatcctcagagtaaataagttaaattcaacagctaacccagaaacatccc
tgaaaactccaaatccctttgctcacaaaacaaacttctattctataatt
tgataaactggatggattttcccaccagaaaggttatgctccacaaagac
aaatagttctgaatctcagatcacatatgcctccaattttacagcgccca
ttgcagcatggtgaggtagacagtctctggacaatagggtccatttctac
tcctcaagcaattgatgaacaattgtgtaattctgacatcctgatgtgca
gtcagttcatataatcttggagtgactataatactgtatggaaaaatagt
ataagagatctctctgtgctcaacaatttcagagaaataaaaacaccccc
caaaagaaggatcctacaaaagaatacacagactacttcctttggtttca
acatgtaatgtctatgtgttgactggaaactcaccaactggtgctttttt
tttttccttttagagaagttctagaatattgtaatacggaaaatagtaac
atttttcttgggtttatatctttctcctgatccctcttttcctctttctg
ccctttttttgccacaacatgaggaatggccttccacatcatacaatgtc
aaagcacatgaaacccaaacatccacagacttaaatttctgagactgagc
caaatttcatgatttttaccataagatgttttcctagacattctgggttc
aaagttcaaaatatagctttgtgaatttgagttctcataaatattggaaa
aaataaagatatcacagtgttatgcattcaggttgtattatataacatat
atcatcaaatagcattatagaatggctctatcttggatctcaaataattc
cactgttgtctagctgaataattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103950579_103951156
seq2: B6Ng01-272F19.b_47_624

seq1  GAATTCAAAATAAATAGAAAACAAAAAGGATCAATGTATTAATATGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAAATAGAAAACAAAAAGGATCAATGTATTAATATGGCAG  50

seq1  GATCATGAGGCTGTCACTCAGGCATGTCATTTTTTATTAGGTATTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAGGCTGTCACTCAGGCATGTCATTTTTTATTAGGTATTTATTT  100

seq1  ACATTTGAAATGTTGTTCTCATTTCTGGTTTCACCTCCTAAAACCACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAATGTTGTTCTCATTTCTGGTTTCACCTCCTAAAACCACCTA  150

seq1  TCCCCTACCCCATTCCCCTGCTCACCAACCTACCCACACCTGCTTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCCATTCCCCTGCTCACCAACCTACCCACACCTGCTTCCTGG  200

seq1  CTCTATCATTCCCCTACCCTAGGGCATAGAGCCTTCACAGGAACAAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCATTCCCCTACCCTAGGGCATAGAGCCTTCACAGGAACAAGGGC  250

seq1  CTCTCCTCCCATTGATGACTGACTAGGACACCCTCTGCTACATATACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCCATTGATGACTGACTAGGACACCCTCTGCTACATATACAGC  300

seq1  TAGAAACACGAGCTCTGTGGTTACTGGTTAGTTCATATTGTTCCTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACGAGCTCTGTGGTTACTGGTTAGTTCATATTGTTCCTCCTAT  350

seq1  AAGGCTGCTAACCTCTTCAGCTCCTTAGGTACTTTCTCTAGCTCCTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCTAACCTCTTCAGCTCCTTAGGTACTTTCTCTAGCTCCTTCAT  400

seq1  TGAAGACACTGTGCTCAGTTCAATGGGAAACTGCAAGGATCTACCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTGTGCTCAGTTCAATGGGAAACTGCAAGGATCTACCTCTGT  450

seq1  AATTGTCAGGCACTGGTGAAAGCTCTCTGGAGACAGCTATGCCAGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAGGCACTGGTGAAAGCTCTCTGGAGACAGCTATGCCAGGCTTC  500

seq1  TGTCAATAAGCACTTGTTGGAATCCACAGAAGTGTCTGGGTTTGGTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAAGCACTTGTTGGAATCCACAGAAGTGTCTGGGTTTGGTGATT  550

seq1  GTATATGGAATGAATCACTGGGTAGGGC  578
      ||||||||||||||||||||||||||||
seq2  GTATATGGAATGAATCACTGGGTAGGGC  578


seq1: chr6_104081045_104082172
seq2: B6Ng01-272F19.g_65_1188 (reverse)

seq1  AAATTA-TCAGCTAAGACAACAGTGGAAATTATTTTGAGATTCAAGATTA  49
      |||||| |||||| |||||||||||| ||||| |||||||| ||||| ||
seq2  AAATTATTCAGCT-AGACAACAGTGG-AATTA-TTTGAGATCCAAGA-TA  46

seq1  GAAGCCATTCTATAATGCTTATTTGATGATATATGTTATATAATACAACC  99
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  G-AGCCATTCTATAATGC-TATTTGATGATATATGTTATATAATACAACC  94

seq1  TGAATGCATAACACTGTTGATTATCTTTATTTTTT-CAATATTTATGAGA  148
      |||||||||||||||| ||| |||||||||||||| ||||||||||||||
seq2  TGAATGCATAACACTG-TGA-TATCTTTATTTTTTCCAATATTTATGAGA  142

seq1  ACTCAAATTCACAAAGCTATATTTTGAACTTTGAA-CCAGAATGTCTAGG  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTCAAATTCACAAAGCTATATTTTGAACTTTGAACCCAGAATGTCTAGG  192

seq1  AAAACATCTTATGGTAAAAATCATGAAATTTGGCTCAGTCTCAGAAATTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTTATGGTAAAAATCATGAAATTTGGCTCAGTCTCAGAAATTT  242

seq1  AAGTCTGTGGATGTTT-GGTTTCATGTGCTTTGACATTGTATGATGTGGA  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTCTGTGGATGTTTGGGTTTCATGTGCTTTGACATTGTATGATGTGGA  292

seq1  AGGCCATTCCTCATGTTGTGGCAAAAAAAGGGCAGAAAGAGGAAAAGAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTCCTCATGTTGTGGCAAAAAAAGGGCAGAAAGAGGAAAAGAGG  342

seq1  GATCAGGAGAAAGATATAAACCCAAGAAAAATGTTACTATTTTCCGTATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAGAAAGATATAAACCCAAGAAAAATGTTACTATTTTCCGTATT  392

seq1  ACAATATTCTAGAACTTCTCTAAAAGGAAAAAAAAAAAGCACCAGTTGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTCTAGAACTTCTCTAAAAGGAAAAAAAAAAAGCACCAGTTGGT  442

seq1  GAGTTTCCAGTCAACACATAGACATTACATGTTGAAACCAAAGGAAGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCAGTCAACACATAGACATTACATGTTGAAACCAAAGGAAGTAG  492

seq1  TCTGTGTATTCTTTTGTAGGATCCTTCTTTTGGGGGGTGTTTTTATTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATTCTTTTGTAGGATCCTTCTTTTGGGGGGTGTTTTTATTTCT  542

seq1  CTGAAATTGTTGAGCACAGAGAGATCTCTTATACTATTTTTCCATACAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTGTTGAGCACAGAGAGATCTCTTATACTATTTTTCCATACAGT  592

seq1  ATTATAGTCACTCCAAGATTATATGAACTGACTGCACATCAGGATGTCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTCACTCCAAGATTATATGAACTGACTGCACATCAGGATGTCAG  642

seq1  AATTACACAATTGTTCATCAATTGCTTGAGGAGTAGAAATGGACCCTATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACAATTGTTCATCAATTGCTTGAGGAGTAGAAATGGACCCTATT  692

seq1  GTCCAGAGACTGTCTACCTCACCATGCTGCAATGGGCGCTGTAAAATTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGACTGTCTACCTCACCATGCTGCAATGGGCGCTGTAAAATTGG  742

seq1  AGGCATATGTGATCTGAGATTCAGAACTATTTGTCTTTGTGGAGCATAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATGTGATCTGAGATTCAGAACTATTTGTCTTTGTGGAGCATAAC  792

seq1  CTTTCTGGTGGGAAAATCCATCCAGTTTATCAAATTATAGAATAGAAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTGGGAAAATCCATCCAGTTTATCAAATTATAGAATAGAAGTT  842

seq1  TGTTTTGTGAGCAAAGGGATTTGGAGTTTTCAGGGATGTTTCTGGGTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGAGCAAAGGGATTTGGAGTTTTCAGGGATGTTTCTGGGTTAG  892

seq1  CTGTTGAATTTAACTTATTTACTCTGAGGATAGTTCTTCCCAAAGAAGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAATTTAACTTATTTACTCTGAGGATAGTTCTTCCCAAAGAAGTG  942

seq1  GAATTCACTTTTCAGAACAATGCAGTTTTCCTTTCTGAAAACTAACAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTCAGAACAATGCAGTTTTCCTTTCTGAAAACTAACAAGA  992

seq1  AAATATTATTACTCTCTGAATATTGATTAATCATTGCATACACGGAGACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTACTCTCTGAATATTGATTAATCATTGCATACACGGAGACT  1042

seq1  CTAGGGAAGGAATGGATCCTAGTATCTGAGAGATGCCAAACTCCAGACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAGGAATGGATCCTAGTATCTGAGAGATGCCAAACTCCAGACAC  1092

seq1  AGCCATTGTAGTCTCTTCCTTTCCTGGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  AGCCATTGTAGTCTCTTCCTTTCCTGGAATTC  1124


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