BAC Information

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BAC

Clone NameB6Ng01-273E14
Chromosome6 (Build37)
Map Location 78,816,671 - 78,817,800
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E14.bB6Ng01-273E14.g
ACCGA074899GA074900
length8151,204
definitionB6Ng01-273E14.b B6Ng01-273E14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttggaggaggaatctctaatggccaagaagttcttaaagaaatg
ttcagttattcttactcagggaaaagcaaatcaaaatgagcttgggattt
cttcttaatagctgttagaatggctaagattaatatattaagatccatta
acatattccactaaataaacaaactcaaagaaaaatatcacatgatgatc
tcattagattctgaaaaagcatttgacaaaatacagcacccctttatgtt
aaaagtattggagaaatcaggaattcaaggtccatacctgaacataataa
aagcaatttacagaaatcaatctggaggttcctcagaaaattggaaatag
atctacctgaatacccagctatactactcttgggaatacacccaaaatat
gcccaaccatgccacagaagcactttttccactatattcatagaggcctt
gtttgtcatagccagaagctggaaacaacccagatgtcccatgatggaag
aatggataaagaaatggataaagaaaatgtggttcacttacacaaagcaa
tactactcagctattaagaacaaggatatcttgagtgttgcaggcaaata
gatggatagaaaatatcatcctgagtgaggtaactcaggctcaaaagggc
atgcatggtatgtactcagtaataaatggatattagaaaaaagaaaagta
cagaataccctagatacagttcacaagccgaagtgcccaagtgagaatgc
ctcagccccacttgggagggagaagaaagcaaccacaagtggagagggag
gggggggagttgaga

gaattcagattcccgggcaaggaatgcaggagagggagaggaagatggac
agccgtcatgcatgggaaggaggaggatcaggcttgacatctgaaagagc
aagagcatacagccatgttagagttgaggaagaatggcccagcggactgc
taccccccaccccaacacataggctctaggttaccaaagatggaatatag
aatttagtgagtaataattcaggagtatcagaggggaagtgttaacaaca
tggaactttggaagtgacccacccattgtgctcttaaggcatattaaaaa
taaggcagtgtgaatatctttcaggaatccagaacattgggcaggtggta
agtaactcaagttttcccttccgagaagtatagagcagattaaaatacga
ccactccaaaagcatgtatatgtttatgtggagatatattagataatata
tttatgtgtctataactgtatatgtatataaatatcttgtatgtgtataa
atatatacttatgatagtatactgtttatatatatttctgcatgcatata
tcaaaattggaaccaaattactctgtgttcagactgtttactataaaatt
acatggaaaaatcaagggcaaataactgaatagaaggtagtagtttggaa
tgatactatgatgacatctccaaggaagtaacctttaaatgttgtcctga
ataaagagaagtgaatttcagccaaccagaagatgaccattccagataac
ctaaccaacacaaaacccaggagtggaaatggatttgtatagcagaaaca
ctgtttgactccaatgtcgttaaagaagcaaggagaggggtctgagatat
gattgatggattctagaaatccccattttaataatagccaactcctgggg
acctatttcaaagcaattttatttgttaatttatgagaagatagaacata
ctttgcagtaggtggtagcaatgggggatgtgaagactggctagattatg
gggatctatttttgaaattaaattctgagtaactccttgtggagttaact
gtacataatacaatagttgtaattaataatttgagctggtgcttgaaaca
aaaagtgacattcatgtttaaggtagaataaacggaaaaagctacatata
tgggagtgcgcaagtttcgtttctcacaattccatggggtgagtactcca
taga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78816671_78817800
seq2: B6Ng01-273E14.g_121_1270

seq1  GTCATGCATGGGAAGGAGGAGGATCAGGCTTGACATCTGAAAGAGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCATGGGAAGGAGGAGGATCAGGCTTGACATCTGAAAGAGCAAGA  50

seq1  GCATACAGCCATGTTAGAGTTGAGGAAGAATGGCCCAGCGGACTGCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAGCCATGTTAGAGTTGAGGAAGAATGGCCCAGCGGACTGCTACC  100

seq1  CCCCACCCCAACACATAGGCTCTAGGTTACCAAAGATGGAATATAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCAACACATAGGCTCTAGGTTACCAAAGATGGAATATAGAATT  150

seq1  TAGTGAGTAATAATTCAGGAGTATCAGAGGGGAAGTGTTAACAACATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGTAATAATTCAGGAGTATCAGAGGGGAAGTGTTAACAACATGGA  200

seq1  ACTTTGGAAGTGACCCACCCATTGTGCTCTTAAGGCATATTAAAAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAAGTGACCCACCCATTGTGCTCTTAAGGCATATTAAAAATAAG  250

seq1  GCAGTGTGAATATCTTTCAGGAATCCAGAACATTGGGCAGGTGGTAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGAATATCTTTCAGGAATCCAGAACATTGGGCAGGTGGTAAGTA  300

seq1  ACTCAAGTTTTCCCTTCCGAGAAGTATAGAGCAGATTAAAATACGACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTTTTCCCTTCCGAGAAGTATAGAGCAGATTAAAATACGACCAC  350

seq1  TCCAAAAGCATGTATATGTTTATGTGGAGATATATTAGATAATATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGCATGTATATGTTTATGTGGAGATATATTAGATAATATATTTA  400

seq1  TGTGTCTATAACTGTATATGTATATAAATATCTTGTATGTGTATAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTATAACTGTATATGTATATAAATATCTTGTATGTGTATAAATAT  450

seq1  ATACTTATGATAGTATACTGTTTATATATATTTCTGCATGCATATATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATGATAGTATACTGTTTATATATATTTCTGCATGCATATATCAA  500

seq1  AATTGGAACCAAATTACTCTGTGTTCAGACTGTTTACTATAAAATTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAACCAAATTACTCTGTGTTCAGACTGTTTACTATAAAATTACAT  550

seq1  GGAAAAATCAAGGGCAAATAACTGAATAGAAGGTAGTAGTTTGGAATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATCAAGGGCAAATAACTGAATAGAAGGTAGTAGTTTGGAATGAT  600

seq1  ACTATGATGACATCTCCAAGGAAGTAACCTTTAAATGTTGTCCTGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATGACATCTCCAAGGAAGTAACCTTTAAATGTTGTCCTGAATAA  650

seq1  AGAGAAGTGAATTTCAGCCAACCAGAAGATGACCATTCCAGATAACCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTGAATTTCAGCCAACCAGAAGATGACCATTCCAGATAACCTAA  700

seq1  CCAACACAAAACCCAGGAGTGGAAATGGATTTGTATAGCAGAAACACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACAAAACCCAGGAGTGGAAATGGATTTGTATAGCAGAAACACTGT  750

seq1  TTGACTCCAATGTCGTTAAAGAAGC-AGGAGAGGGGTCTGAGATATGATT  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGACTCCAATGTCGTTAAAGAAGCAAGGAGAGGGGTCTGAGATATGATT  800

seq1  GATGGATTCTAGAAATCCCCATTTTAATAATAGCCAACTCCT-GGGACCT  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGGATTCTAGAAATCCCCATTTTAATAATAGCCAACTCCTGGGGACCT  850

seq1  ATTTCAAAGCAATTTTATTTGTTAATTTATGAG-AGATAGAACATAC-TT  896
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  ATTTCAAAGCAATTTTATTTGTTAATTTATGAGAAGATAGAACATACTTT  900

seq1  GCAGTAGGTGGTAGCAAT-GGGGATGTGAAGACTGGCTAGA-TAT-GGGA  943
      |||||||||||||||||| |||||||||||||||||||||| ||| ||||
seq2  GCAGTAGGTGGTAGCAATGGGGGATGTGAAGACTGGCTAGATTATGGGGA  950

seq1  TCTA-TTTTGAAATTAAA-TCTGAGT-ACTCC-TGT-GAG-TAACTGTAC  987
      |||| ||||||||||||| ||||||| ||||| ||| ||| |||||||||
seq2  TCTATTTTTGAAATTAAATTCTGAGTAACTCCTTGTGGAGTTAACTGTAC  1000

seq1  AT-ATACAATAG-TGTAATTAAATATTTGAGCTTGTGCTTTGAAAC-AAA  1034
      || ||||||||| |||||||||  ||||||||| |||| ||||||| |||
seq2  ATAATACAATAGTTGTAATTAATAATTTGAGCTGGTGC-TTGAAACAAAA  1049

seq1  AGTGACA-TCATGTTTTAAAGTAGGAATAACAGAAAAA-CTACATATATG  1082
      ||||||| ||||| ||||| |||| |  ||| |||||| |||||||||||
seq2  AGTGACATTCATG-TTTAAGGTAGAATAAACGGAAAAAGCTACATATATG  1098

seq1  GATGCGCGCAAGGTTTCTGTTCT-ACAATTCCAT-TTGTGAG---TTCAT  1127
      |  | |||||| |||||  |||| ||||||||||   |||||   | |||
seq2  GGAGTGCGCAA-GTTTCGTTTCTCACAATTCCATGGGGTGAGTACTCCAT  1147

seq1  AGA  1130
      |||
seq2  AGA  1150


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