BAC Information

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BAC

Clone NameB6Ng01-274P18
Chromosome6 (Build37)
Map Location 40,571,264 - 40,710,483
singlet/doubletdoublet
Overlap geneMgam
Upstream geneBraf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274P18.bB6Ng01-274P18.g
ACCGA076143GA076144
length1,1161,085
definitionB6Ng01-274P18.b B6Ng01-274P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,571,264 - 40,572,373)(40,709,382 - 40,710,483)
sequence
gaattctcacctgaggaataccgaatggctgataagcacctgaaaaaatg
ttcaacatcctttatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccactgctggtg
tgattgcaagcttgaacaaccactctggaaaaaaaaatctgattcttaag
aggtagaacttgtatgctgggcagtggtggtgcatgcctttaatcccagc
acttgggaggcagaggcaggcggatttctgagttcgaggccagcctgggc
tacagagtgagttctaggacagccagagctatacagaaagaagtagaact
tgttattctccacgttaacttacaacctcagaaacctaaaggtacagccc
cattgtctgcacttaccaagccatctgggagattctgatgcacactacgc
ccttacatttgaaaagcactaagatacaaggaggaaagaattttaccagg
agctcagcaataaccactctctctgaaggaatgagaacatggcttgcata
ctggacctttcttcaagatccatgttgtgtttttctttcttttttattgg
atattttatttattcacatttcaaatgttatcccctttcctggtttcccc
tctgaaaaccccctatcccatccccccttcttctatgaaagtgctcccac
acccacctacccactcctgcctccctgccctggcattcccctacactggg
ggcataaagccttcacaggtccaaaggcctctcctcccactgatgcccaa
caaggccatactctgctacatatgtgactagagccatggttcactccatg
tgttctctggctagtggtttagtttctgggagcttctggggggggtctag
ttgggttgctactgctgttcttcttatgggctgcaaacccctttagttcc
ttcagtttcttttttctacctccctccattggcaacccgtgctcagccat
attggctgagagcatctgttctctgaatttgtcaaggttctgacgaaagc
tcctcaaggagacagc
gaattctttctctacagtccccacctgactccaagccccctacactaact
aagggaaagcttatatcttcaaatataacacaaggttacttatcttcttc
actgtcccatggagcagaattgttaggttacctttagagaaagagaatct
gagggaggtcacccaagtggttaattttgctgagaaagttggtagagttt
agggctgattgttcacagttctatgaaaacttggtgaaaccaggatgagt
gaaggaaagaggagttgttacacatttgtccccaactggaaggagaactt
tctgtctccactttgcccaaggcagagaagcggcataaagaaaagaggaa
gctcacatgaggactatccatatgaggatctggctttgagtctgatttag
caggatcagtgggaaacctttctactgtgaaacaatagcatgctctaacc
aagggcatcatgggtgtcttgacttcacctcaattgccagtaggaatttt
aatattttttggctcgtttataagaaggaaaaaatggaaaagatggatcc
ccaacaaacaggtcttctcctctctgtactcagcctgacaactacagtcc
ttctaccctcagaggcccccatactcacaggctcaagcacagggctgact
aggaaggctgggcccaacaggaactgtttgtctatattccaggtctcccg
gtctgacacaaacctagaagtggaaagcaagatgtcacaatcatatccta
ccgaggccacagcctacgatgctgaagaaatcctcaagtctgaactcaag
ccagaaatgcagctgagcccaacagcatctctattatatttttatcaagt
aatatagaccacacgccctacaagtcacttccctcaaccacagaaggaat
ttgggccacattggctctataaaatatctggatccctctttagcacagca
tttaatatgaggataggcctcatcccccaccctgatacacccacttagtg
atactgtgcatctgtaacataactacaaagatagacgttcgcatgtcaat
gtggaggaatatgtattttattcctatcatttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40571264_40572373
seq2: B6Ng01-274P18.b_42_1157

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGATAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGATAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTTATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTTATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTG  200

seq1  TGATTGCAAGCTTGAACAACCACTCTGGAAAAAAAAATCTGATTCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCAAGCTTGAACAACCACTCTGGAAAAAAAAATCTGATTCTTAAG  250

seq1  AGGTAGAACTTGTATGCTGGGCAGTGGTGGTGCATGCCTTTAATCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAACTTGTATGCTGGGCAGTGGTGGTGCATGCCTTTAATCCCAGC  300

seq1  ACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGGC  350

seq1  TACAGAGTGAGTTCTAGGACAGCCAGAGCTATACAGAAAGAAGTAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTCTAGGACAGCCAGAGCTATACAGAAAGAAGTAGAACT  400

seq1  TGTTATTCTCCACGTTAACTTACAACCTCAGAAACCTAAAGGTACAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTCCACGTTAACTTACAACCTCAGAAACCTAAAGGTACAGCCC  450

seq1  CATTGTCTGCACTTACCAAGCCATCTGGGAGATTCTGATGCACACTACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGCACTTACCAAGCCATCTGGGAGATTCTGATGCACACTACGC  500

seq1  CCTTACATTTGAAAAGCACTAAGATACAAGGAGGAAAGAATTTTACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTTGAAAAGCACTAAGATACAAGGAGGAAAGAATTTTACCAGG  550

seq1  AGCTCAGCAATAACCACTCTCTCTGAAGGAATGAGAACATGGCTTGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAATAACCACTCTCTCTGAAGGAATGAGAACATGGCTTGCATA  600

seq1  CTGGACCTTTCTTCAAGATCCATGTTGTGTTTTTCTTTCTTTTTTATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTTTCTTCAAGATCCATGTTGTGTTTTTCTTTCTTTTTTATTGG  650

seq1  ATATTTTATTTATTCACATTTCAAATGTTATCCCCTTTCCTGGTTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTTATTCACATTTCAAATGTTATCCCCTTTCCTGGTTTCCCC  700

seq1  TCTGAAAACCCCCTATCCCATCCCCCCTTCTTCTATGAAAGTGCTCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACCCCCTATCCCATCCCCCCTTCTTCTATGAAAGTGCTCCCAC  750

seq1  ACCCACCTACCCACTCCTGCCTCCCTGCCCTGGCATTCCCCTACACTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTACCCACTCCTGCCTCCCTGCCCTGGCATTCCCCTACACTGGG  800

seq1  GGCATAAAGCCTTCACAGGTCCAAAGGCCTCTCCTCCCACTGATGCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAAGCCTTCACAGGTCCAAAGGCCTCTCCTCCCACTGATGCCCAA  850

seq1  CAAGGCCATACTCTGCTACATATGTGACTAGAGCCATGGTTCACTCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCATACTCTGCTACATATGTGACTAGAGCCATGGTTCACTCCATG  900

seq1  TGTTCTCTGGCTAGTGGTTTAGTTTCTGGGAGC-TCTGGGGGGGGTCTAG  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTCTCTGGCTAGTGGTTTAGTTTCTGGGAGCTTCTGGGGGGGGTCTAG  950

seq1  TT-GGTTGCTACTGCTGTTCTTCTTATGGGCTGCAAACCCCTTTAGTTCC  998
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGCTACTGCTGTTCTTCTTATGGGCTGCAAACCCCTTTAGTTCC  1000

seq1  TTCAGTT--CTTTTTCTAACT-CCTCCATTGGGCACCCCGTGCTCAGCCA  1045
      |||||||   |||||||| || |||||||| |||| ||||||||||||||
seq2  TTCAGTTTCTTTTTTCTACCTCCCTCCATT-GGCAACCCGTGCTCAGCCA  1049

seq1  ATGGTTGGCTGAGAGCATCTG-TCTCTGAATTTGTC-AGGTTCTGACAGA  1093
          ||||||||||||||||| |||||||||||||| ||||||||||  |
seq2  --TATTGGCTGAGAGCATCTGTTCTCTGAATTTGTCAAGGTTCTGACGAA  1097

seq1  AGCT-CTC-AGGAGACAGC  1110
      |||| ||| ||||||||||
seq2  AGCTCCTCAAGGAGACAGC  1116

seq1: chr6_40709382_40710483
seq2: B6Ng01-274P18.g_65_1149 (reverse)

seq1  TTTAAATGATAAGAAATAAAATACCATAATTTCTTCCACATTTGGACATG  50
      |||||||||| || ||||||||| ||||  ||| ||||||||  ||||||
seq2  TTTAAATGAT-AGGAATAAAATA-CATA--TTCCTCCACATT--GACATG  44

seq1  CGGAAACCGTCTTATCTTTTGTAGTTTATGTTTACAGATGCAACAGTATC  100
      ||   | |||| |||| ||||||| ||||| |||||||||| ||||||||
seq2  CG---AACGTC-TATC-TTTGTAG-TTATG-TTACAGATGC-ACAGTATC  86

seq1  ACTAAAGTGGGTGTATCAAGGGTTGGGGGATGAGGCCTATCCTCATATTT  150
      ||| ||||||||||||||  || |||||||||||||||||||||||||| 
seq2  ACT-AAGTGGGTGTATCA--GGGTGGGGGATGAGGCCTATCCTCATATTA  133

seq1  AATGCTGTGCTAAAGAGGGATCCAGATATTTTATAGAGCCAATGTGG-CC  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGCTGTGCTAAAGAGGGATCCAGATATTTTATAGAGCCAATGTGGCCC  183

seq1  AAATTCCTTCTGTGGTTTGAGGGAAGTGACTTGTAGGGCGTGTGGTCTAT  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTCTGTGG-TTGAGGGAAGTGACTTGTAGGGCGTGTGGTCTAT  232

seq1  ATTACTTGATAAAAATATAATAGAGATGCTGTTGGGCTCAGCTGCATTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGATAAAAATATAATAGAGATGCTGTTGGGCTCAGCTGCATTTC  282

seq1  TGGCTTGAGTTCAGACTTGAGGATTTCTTCAGCATCGTAGGCTGTGGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAGTTCAGACTTGAGGATTTCTTCAGCATCGTAGGCTGTGGCCT  332

seq1  CGGTAGGATATGATTGTGACATCTTGCTTTCCACTTCTAGGTTTGTGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGGATATGATTGTGACATCTTGCTTTCCACTTCTAGGTTTGTGTCA  382

seq1  GACCGGGAGACCTGGAATATAGACAAACAGTTCCTGTTGGGCCCAGCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGAGACCTGGAATATAGACAAACAGTTCCTGTTGGGCCCAGCCTT  432

seq1  CCTAGTCAGCCCTGTGCTTGAGCCTGTGAGTATGGGGGCCTCTGAGGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCAGCCCTGTGCTTGAGCCTGTGAGTATGGGGGCCTCTGAGGGTA  482

seq1  GAAGGACTGTAGTTGTCAGGCTGAGTACAGAGAGGAGAAGACCTGTTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTGTAGTTGTCAGGCTGAGTACAGAGAGGAGAAGACCTGTTTGT  532

seq1  TGGGGATCCATCTTTTCCATTTTTTCCTTCTTATAAACGAGCCAAAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATCCATCTTTTCCATTTTTTCCTTCTTATAAACGAGCCAAAAAAT  582

seq1  ATTAAAATTCCTACTGGCAATTGAGGTGAAGTCAAGACACCCATGATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTCCTACTGGCAATTGAGGTGAAGTCAAGACACCCATGATGCC  632

seq1  CTTGGTTAGAGCATGCTATTGTTTCACAGTAGAAAGGTTTCCCACTGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTAGAGCATGCTATTGTTTCACAGTAGAAAGGTTTCCCACTGATC  682

seq1  CTGCTAAATCAGACTCAAAGCCAGATCCTCATATGGATAGTCCTCATGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAATCAGACTCAAAGCCAGATCCTCATATGGATAGTCCTCATGTG  732

seq1  AGCTTCCTCTTTTCTTTATGCCGCTTCTCTGCCTTGGGCAAAGTGGAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTCTTTTCTTTATGCCGCTTCTCTGCCTTGGGCAAAGTGGAGAC  782

seq1  AGAAAGTTCTCCTTCCAGTTGGGGACAAATGTGTAACAACTCCTCTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCTCCTTCCAGTTGGGGACAAATGTGTAACAACTCCTCTTTCC  832

seq1  TTCACTCATCCTGGTTTCACCAAGTTTTCATAGAACTGTGAACAATCAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCATCCTGGTTTCACCAAGTTTTCATAGAACTGTGAACAATCAGC  882

seq1  CCTAAACTCTACCAACTTTCTCAGCAAAATTAACCACTTGGGTGACCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTCTACCAACTTTCTCAGCAAAATTAACCACTTGGGTGACCTCC  932

seq1  CTCAGATTCTCTTTCTCTAAAGGTAACCTAACAATTCTGCTCCATGGGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCTCTTTCTCTAAAGGTAACCTAACAATTCTGCTCCATGGGAC  982

seq1  AGTGAAGAAGATAAGTAACCTTGTGTTATATTTGAAGATATAAGCTTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAAGATAAGTAACCTTGTGTTATATTTGAAGATATAAGCTTTCC  1032

seq1  CTTAGTTAGTGTAGGGGGCTTGGAGTCAGGTGGGGACTGTAGAGAAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAGTGTAGGGGGCTTGGAGTCAGGTGGGGACTGTAGAGAAAGAA  1082

seq1  TTC  1102
      |||
seq2  TTC  1085