BAC Information

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BAC

Clone NameB6Ng01-275G17
Chromosome6 (Build37)
Map Location 24,775,581 - 24,776,096
singlet/doubletsinglet
Overlap genenone
Upstream geneCadps2, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1
Downstream geneHyal5, 6332401O19Rik, LOC384358, Gpr37, Pot1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275G17.bB6Ng01-275G17.g
ACCGA076462GA076463
length1,0951,162
definitionB6Ng01-275G17.b B6Ng01-275G17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttttccgcatctaatgagatgagatgatcatgtggtttttg
tctttgagtttgtttatatactggattacgttgatggatttctgaatatt
gaaccatccttgcatccctgggatgaaacctacttggtcaggatggatga
ttgttttgatatgttcttggattcggttagtgagaactttattgaggatt
tttgcatcgatattcataagggaaattggtctgaagttctctatctttgt
tgggtctttttgtagtttaggtatcagagtaattgtggtttcatagaatg
agttgggtagagttccctctacttctattttgtggaatagtttgtgaaga
accgggattagatcttctttgaaggtctgatagaactctgcactaaaccc
atctggtcctgggctttttttggttgggagactattaatgactgcttcta
tttctttaggggatataggagtgtttagatcattaacctgatcttgattt
aactttggtacctggtatctgtctagaaacttgtccatttcatccaggtt
ctccagtttggttgagtatagccttttgtagaaggatctgatggtgtttg
gatttcttcaggatctgttgttatgtctcccttttcatttctgattttgt
taattaggattccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccagctcctcgattggttgattctttga
atagttcttcttgtttccacttcgttgatttcacccctgagtttgattat
ttcctgccttctactcctcttgggtgaatttgcttccttttcttctagac
cttttaggtgtgctgtcagctgctaatgtgtgctctctctagtttctttt
tggaggcactcagagctatgagtttcctcttagaaatgcttcatgtgtcc
atgagttggggtatgttggggcttcatttcataaactccaaaatctgaaa
ctcgcttcttattcttccttgacaagggtatcatgagaagagtgt
gaattcataaatctccaggtttccagccaaacatgaatgatttcaaaaat
cacttttttcagtcataacaacaaatagaaatttgaatatttggttttgg
tgaagttttttgcttgtatcataaagatgaggtcagtaaaataatgataa
gctttatttcaccaaaataaaaaaactaaatattgggtgatataagcatg
ttttgtggtctgctcctggagctgatcctgtgccatggtgctccatatcc
aaataatattaggagagaggaatgccaatatacctgtgaacacagataag
accaccacttctgctcaaatttctggatcaagggggaccctccctgatcc
aggaggacacaggaaccaaggaacatctggggacaggatccttgaggttt
ccatctgcacccagaagctgaccctgtgccacagctctccatacccaaat
tcctcctggagagaactgacacacagtactgacacataggcttgcaggag
gcgtaagccacagccagagatatcaggaacagttaacaaaagagataacc
agatggcaagaggcaagagcaagaacataagcaacagaaaccaaggctac
ttgaaatcattagaacccagttatcccaccacagcgagcctgggatatga
caacaacccagaaaagcaagactctgatttaaaatcacatctcatgatga
tgatagaggactttaagaagaacatgaataactcccttaaagaaatacag
gagaacacaggtaaacaggtagaagcctttaaagaggaaatgcaaaaatc
ccttaaagaattatacaaaaacacatgcaaatagtaaaagaaatgaaagg
aaaccatccaagatctaaaaatggaaataataacaataaaggaatcacaa
gaggaaaaaaccctggagatagaaaacctaggaaagagatcagagtcata
gatgcaagcatcaccacagatacagagatagagaaagatctcagtgcaga
gaatacatagatatcatgacacacattcaaggaaatgcaaatacaaaaag
ctctacccaaaggctcagtcagaccatgtgagacacctagataatagcat
gaagaggtgagatcctaaccttaagcagcaatattctttcaacaaattta
tggaagaaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_24775581_24776096
seq2: B6Ng01-275G17.b_636_1138 (reverse)

seq1  ACACTCTTCTCATGATACCTTGGTCAAGGAAGGAATAA----AGAAATTA  46
      ||||||||||||||||||| | ||||||||| ||||||     ||  || 
seq2  ACACTCTTCTCATGATACCCTTGTCAAGGAA-GAATAAGAAGCGAGTTTC  49

seq1  AGGAATTTTTGGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTA  96
      ||    ||||||||||| ||| |||||||||| |||||||||| |||| |
seq2  AG---ATTTTGGAGTTT-ATG-AAATGAAGCCCCAACATACCCCAACTCA  94

seq1  TGGGACACAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGT  146
      | |||||| ||| |||||||||||||||| ||||||||||||||||||| 
seq2  T-GGACAC-ATG-AAGCATTTCTAAGAGG-AAACTCATAGCTCTGAGTGC  140

seq1  CTCCAAAAAGAAACTAGAGAGAGCACACATTAGCAGCTTGACAACACACC  196
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CTCCAAAAAGAAACTAGAGAGAGCACACATTAGCAGC-TGACAGCACACC  189

seq1  TAAAAGCTCTAGAACAAAAGGAAGCAAATTCACTCAAGAGGAGTAGACAG  246
      |||||| ||||||| |||||||||||||||||| |||||||||||||  |
seq2  TAAAAGGTCTAGAAGAAAAGGAAGCAAATTCACCCAAGAGGAGTAGAAGG  239

seq1  CAGGAAAATAATCAAAATCAGGGGTGAAATCAACCAAGTGGAAACAGGAA  296
      |||| ||||||||||| ||||||||||||||||| ||||||||||| |||
seq2  CAGG-AAATAATCAAACTCAGGGGTGAAATCAACGAAGTGGAAACAAGAA  288

seq1  GAACTATTCAAAGAATCAACCAATCGAGGAGCTGATTCTTTGAGAAAATC  346
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAACTATTCAAAGAATCAACCAATCGAGGAGCTGGTTCTTTGAGAAAATC  338

seq1  AACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCACAGGGAAAG  396
      ||||||||||||||||||||||| |||||||||||||||||||||||   
seq2  AACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGA---  385

seq1  TATTCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATC  446
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATC  434

seq1  CTGAAGAAATCCAAAACACCATCACATCCTTCTACAAAAGGCTCTACTCA  496
      |||||||||||| ||||||||||| |||||||||||||||||| ||||||
seq2  CTGAAGAAATCC-AAACACCATCAGATCCTTCTACAAAAGGCTATACTCA  483

seq1  ACAAAACTGGAGAACCTGGA  516
      || |||||||||||||||||
seq2  ACCAAACTGGAGAACCTGGA  503