BAC Information

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BAC

Clone NameB6Ng01-275K03
Chromosome6 (Build37)8 (Build37)
Map Location 36,594,441 - 36,595,60696,257,448 - 96,257,776
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370
Downstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275K03.bB6Ng01-275K03.g
ACCGA076619GA076620
length1,150906
definitionB6Ng01-275K03.b B6Ng01-275K03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,594,441 - 36,595,606)(96,257,448 - 96,257,776)
sequence
gaattcacttcttaaatgcatcaaagtgtgcctaaaaggaaataagaagg
gtcattaatatgttgattaatggcaaactttattctttgttagttgtatg
taccgaaaagtttttcagctctggcctttgtttattaactgtaaatttat
tcaaataatatttcattcacaaataagcagaaattaaaatgtttgaggtt
tagcagtggttcagtgaaccttaccttctcttgcttataaattgttaaca
tagattaatatagtttgagatacctattgacatagatataaacatgttaa
actgttagacaaggcagaaaaatcaagtttggtgtggaaagacaggaatt
gttggtgccaatatagtgctcagtcagtaggttctttttgtctttcttgc
tagtctactaaggaaaatcttaatgagcgtgttttaaataacacaaaagc
aaatccaactgacacaataagcccttaatctaatgtgatttaataatatg
ctttgagagcccattaagtctacagcagtggactaattaccaggaaagcc
ccacacgtgagtcccagtccctgttcttcaacgaggcttacaatgcacca
ctgacaggagctagaatggaagatggattccgacagagctgatgccaaag
cactgtaatcacatccaagcagactaaagagatggagaaagcatgcagaa
gaaagaaagaaggatgtggcaggatgctggctgggaaccttctacaccgg
gctttatcggttcccatggaaacggtcgacttgcatgaggcactcttact
aggtgtcccttattgttttggaggacagaaaataacatttccatgacagc
tacagattagctgagcaagtagttcagctctctttctaacgtggtgtact
tgcaaaataaaagaaagtaaagtaaagaagattggttttgtccagagcaa
aatgtgtgtattctctcatgctggtgaagaaatttgagctccctttcaga
aaggcccaactgcagtttatactttctcacattcaagtagcagacttcac
acagcagtgattttctgcgagtgagtattgcaatacctaaggtaatatag
aaagattgaaatgacggaatctgtccagggagctatggcgcaatatttag


cgcggaattctctctctctctcctcggtagtaaacagggtctttagaagc
tgttggcagttatcccaggtaggctgatgggagtacatcagagactctgt
cagcccagtgagccctgcagggttttctgaaaaaggaaggtgtttaactt
tccagttatagagatcaaaggaagaaaatgggcaatactgcatgtcctag
tcagggtttctattcctgcacaaacatcataaccaagaagcaagttgggg
aggaaagggtttatttggcttacacttccatactgctgttcatcaccaaa
tgaagtcaggactggaactcaagcaggtcaggaagcaggagctgatgcag
aggccatggaggaatgttctttactggcttgcctcacctggcttgctcag
ccttctctcttatagaacccaagactaccagcccagagatggtcccaccc
acaaggggcctttcccccttgatcactaattgagaaaatgctttacagtt
gaatctcctggaggcatttcctcaactgaagctcctttctctgtgataac
tccagctgtgtcaagttgacacaaaactagccagtactctgcagaagttg
tagaccattctggtcagcctgaggagccccatcagccctgaggggaagcg
ccatggttgaatcggctggcccctcaggggtggctccctgccagctcctt
gttcctgctgagggacctcctcccccagtcgctgaggccagggccgggag
tggggccaagggagctgggggttggggaacgtgaaggtagggtggaggct
gggaaattgggccactcagggggtttcctctatctctgggtagatcttag
gggtgagtgcctgtggaagtgtggccacttgctgtcctcttaggctgtga
cttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36594441_36595606
seq2: B6Ng01-275K03.b_43_1192

seq1  GAATTCACTTCTTAAATGCATCAAAGTGTGCCTAAAAGGAAATAAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTTAAATGCATCAAAGTGTGCCTAAAAGGAAATAAGAAGG  50

seq1  GTCATTAATATGTTGATTAATGGCAAACTTTATTCTTTGTTAGTTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAATATGTTGATTAATGGCAAACTTTATTCTTTGTTAGTTGTATG  100

seq1  TACCGAAAAGTTTTTCAGCTCTGGCCTTTGTTTATTAACTGTAAATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAAAAGTTTTTCAGCTCTGGCCTTTGTTTATTAACTGTAAATTTAT  150

seq1  TCAAATAATATTTCATTCACAAATAAGCAGAAATTAAAATGTTTGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAATATTTCATTCACAAATAAGCAGAAATTAAAATGTTTGAGGTT  200

seq1  TAGCAGTGGTTCAGTGAACCTTACCTTCTCTTGCTTATAAATTGTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGGTTCAGTGAACCTTACCTTCTCTTGCTTATAAATTGTTAACA  250

seq1  TAGATTAATATAGTTTGAGATACCTATTGACATAGATATAAACATGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAATATAGTTTGAGATACCTATTGACATAGATATAAACATGTTAA  300

seq1  ACTGTTAGACAAGGCAGAAAAATCAAGTTTGGTGTGGAAAGACAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGACAAGGCAGAAAAATCAAGTTTGGTGTGGAAAGACAGGAATT  350

seq1  GTTGGTGCCAATATAGTGCTCAGTCAGTAGGTTCTTTTTGTCTTTCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCCAATATAGTGCTCAGTCAGTAGGTTCTTTTTGTCTTTCTTGC  400

seq1  TAGTCTACTAAGGAAAATCTTAATGAGCGTGTTTTAAATAACACAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACTAAGGAAAATCTTAATGAGCGTGTTTTAAATAACACAAAAGC  450

seq1  AAATCCAACTGACACAATAAGCCCTTAATCTAATGTGATTTAATAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAACTGACACAATAAGCCCTTAATCTAATGTGATTTAATAATATG  500

seq1  CTTTGAGAGCCCATTAAGTCTACAGCAGTGGACTAATTACCAGGAAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAGCCCATTAAGTCTACAGCAGTGGACTAATTACCAGGAAAGCC  550

seq1  CCACACGTGAGTCCCAGTCCCTGTTCTTCAACGAGGCTTACAATGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTGAGTCCCAGTCCCTGTTCTTCAACGAGGCTTACAATGCACCA  600

seq1  CTGACAGGAGCTAGAATGGAAGATGGATTCCGACAGAGCTGATGCCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGAGCTAGAATGGAAGATGGATTCCGACAGAGCTGATGCCAAAG  650

seq1  CACTGTAATCACATCCAAGCAGACTAAAGAGATGGAGAAAGCATGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAATCACATCCAAGCAGACTAAAGAGATGGAGAAAGCATGCAGAA  700

seq1  GAAAGAAAGAAGGATGTGGCAGGATGCTGGCTGGGAACCTTCTACACCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAGGATGTGGCAGGATGCTGGCTGGGAACCTTCTACACCGG  750

seq1  GCTTTATCGGTTCCCATGGAAACGGTCGACTTGCATGAGGCACTCTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCGGTTCCCATGGAAACGGTCGACTTGCATGAGGCACTCTTACT  800

seq1  AGGTGTCCCTTATTGTTTTGGAGGACAGAAAATAACATTTCCATGACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCCTTATTGTTTTGGAGGACAGAAAATAACATTTCCATGACAGC  850

seq1  TACAGATTAGCTGAGCAAGTAGTTCAGCTCTCTTTCTAACGTGGTGTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTAGCTGAGCAAGTAGTTCAGCTCTCTTTCTAACGTGGTGTACT  900

seq1  TGCAAAATAAAAGAAAGTAAAGTAAAAGAAAGATTGGTTTTGTCCAGAGC  950
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  TGCAAAATAAAAGAAAGTAAAGTAAA--GAAGATTGGTTTTGTCCAGAGC  948

seq1  AAAATGTGTGTATTCTCTCATGCTGGTGAAGAAATTTGAGCTCCC-TTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATGTGTGTATTCTCTCATGCTGGTGAAGAAATTTGAGCTCCCTTTCA  998

seq1  GAAAGGCCCCAACTGCAGTTTATACTTTCTCACAATTCAAGGTAGCAGGA  1049
      |||||| |||||||||||||||||||||||||| |||||| |||||||  
seq2  GAAAGG-CCCAACTGCAGTTTATACTTTCTCAC-ATTCAA-GTAGCAG--  1043

seq1  CCTTCAACACAGCAGTGATTTTCTGGCAGAGTGAGTATTGCAATACCT-A  1098
       |||| |||||||||||||||||||   |||||||||||||||||||| |
seq2  ACTTC-ACACAGCAGTGATTTTCTG--CGAGTGAGTATTGCAATACCTAA  1090

seq1  GGTAATATTAGGAAAGATTTGAAAATGGAAGGAAATCTGGTTCAAAGGGA  1148
      ||||||||   ||||||||   |||||  | | ||||||  ||  |||||
seq2  GGTAATAT--AGAAAGATT--GAAATG--ACGGAATCTG--TC-CAGGGA  1131

seq1  GCTAT-GCGGATTATTTAG  1166
      ||||| ||| | |||||||
seq2  GCTATGGCGCAATATTTAG  1150


seq1: chr8_96257448_96257776
seq2: B6Ng01-275K03.g_253_582 (reverse)

seq1  AGGAAATGCCTCCATGAGATCCAACTCTAAGGCATTTTCTCAATTAGTGA  50
      |||||||||||||| ||||| ||||| ||| |||||||||||||||||||
seq2  AGGAAATGCCTCCAGGAGATTCAACTGTAAAGCATTTTCTCAATTAGTGA  50

seq1  TCAAGGGGAAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTC  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTC  100

seq1  TT-GGTTCTTTAAGAGAGCAGGCTGAGCAAGCCAGGGGAGGCAAGCCAGT  149
      || |||||| |||||||| ||||||||||||||||| |||||||||||||
seq2  TTGGGTTCTATAAGAGAGAAGGCTGAGCAAGCCAGGTGAGGCAAGCCAGT  150

seq1  AAAGAACATCCCTCCATGGCCTCTGCAACAGCTCCTGCTTCCTGACCTGC  199
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  AAAGAACATTCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGC  200

seq1  TTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGTG  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAGTTCCAGTCCTGACTTCATTTGGTGATGAACAGCAGTATGGAAGTG  250

seq1  TAAGCCGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTT  299
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTTATGATGTT  300

seq1  TGTACAGGAATAGAAACCCTGACTAAGACA  329
      ||| ||||||||||||||||||||| ||||
seq2  TGTGCAGGAATAGAAACCCTGACTAGGACA  330


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