BAC Information

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BAC

Clone NameB6Ng01-276H17
Chromosome6 (Build37)
Map Location 11,566,582 - 11,567,746
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276H17.bB6Ng01-276H17.g
ACCGA077253GA077254
length1,1911,154
definitionB6Ng01-276H17.b B6Ng01-276H17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatatacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactgggttgttatcatgtagaagatgcgaatcgatccatacttatc
tccttgtactaacgtcaaatctaagtggatcaaggaacttcacataaacc
agagacactgaactataggaggagaaagtggggaaaagccttgaagatat
gggcaacaggaaaactctgaacagaaacagcatggctggcctgtaggatc
gagacggacaaatggaacctaatggaaaacctcttcgaagt

gaattccataaaggcctctgtgtagctgtatttagattctactcttgttg
cagccagagacaggacttggcttcagtatctgaaacctttttagaacaca
ctcagaaaataatataaaacagagtgaaagacataagagctatagaatac
gaatgtgccttgtgtctgcagtgctgaacttaatggccttctgcactctg
aatcgtgcattcatttctcttctatgaactctcaagaccagacatttgac
ttcttggatatttctccagacctctcctgcacagctctcctctctggccc
ccatagcctaataatttaccagattctttgtgaggcagaggttcctgaat
agtgttgcattttcctgtaaacatttttgatatccctaggacaactgcca
taggaaagatagtaggccgggagacatgttaatcaaaacagttctgccaa
gatacaaacactaaagaagaaatattctattttgagttttctttaaaagt
tttacataaattcaaaaatgcatatggagatatctctgttgataccctgc
tgtgtttaatatcttgtctacaatgatttacacactatttaagaatcaga
gacttggtatatccctataaaagtccaatgaaagtatacggaaataggaa
atatatttatccataatcttcatgaattggtttaggccaacaagaatgta
ttgtatgacacactataagaaaaaacagtttataaattgagaaacttaat
atttttcatagcatgttttagcattaaaaccttaatatcatggactctat
agataattgtgtataagcaattttaagaaaattcatgaagggagtctagc
cagctgaagcctagtgagcatggtttctggcagaccttgtccttctctcc
cattccctttacttgctaaaaactgttaagattacattttctcaagctag
ccacccagggtctatacctttaatttggccacttccttcttctgagctat
caccaacgttcagctatcacatattgatgtacacatcaaacctcccacac
ctagtacatgccaatcaaataaatacctcattctagcacagggatttcat
ttaccttatagctgccatttgcctaggacatctccgtcatctcctttcct
ttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11566582_11567746
seq2: B6Ng01-276H17.g_65_1218

seq1  GAATTCCATAAAGGCCTCTGTGTAGCTGTATTTAGATTCTACTCTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAGGCCTCTGTGTAGCTGTATTTAGATTCTACTCTTGTTG  50

seq1  CAGCCAGAGACAGGACTTGGCTTCAGTATCTGAAACCTTTTTAGAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAGACAGGACTTGGCTTCAGTATCTGAAACCTTTTTAGAACACA  100

seq1  CTCAGAAAATAATATAAAACAGAGTGAAAGACATAAGAGCTATAGAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAATAATATAAAACAGAGTGAAAGACATAAGAGCTATAGAATAC  150

seq1  GAATGTGCCTTGTGTCTGCAGTGCTGAACTTAATGGCCTTCTGCACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCCTTGTGTCTGCAGTGCTGAACTTAATGGCCTTCTGCACTCTG  200

seq1  AATCGTGCATTCATTTCTCTTCTATGAACTCTCAAGACCAGACATTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGCATTCATTTCTCTTCTATGAACTCTCAAGACCAGACATTTGAC  250

seq1  TTCTTGGATATTTCTCCAGACCTCTCCTGCACAGCTCTCCTCTCTGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATATTTCTCCAGACCTCTCCTGCACAGCTCTCCTCTCTGGCCC  300

seq1  CCATAGCCTAATAATTTACCAGATTCTTTGTGAGGCAGAGGTTCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCTAATAATTTACCAGATTCTTTGTGAGGCAGAGGTTCCTGAAT  350

seq1  AGTGTTGCATTTTCCTGTAAACATTTTTGATATCCCTAGGACAACTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGCATTTTCCTGTAAACATTTTTGATATCCCTAGGACAACTGCCA  400

seq1  TAGGAAAGATAGTAGGCCGGGAGACATGTTAATCAAAACAGTTCTGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGATAGTAGGCCGGGAGACATGTTAATCAAAACAGTTCTGCCAA  450

seq1  GATACAAACACTAAAGAAGAAATATTCTATTTTGAGTTTTCTTTAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAACACTAAAGAAGAAATATTCTATTTTGAGTTTTCTTTAAAAGT  500

seq1  TTTACATAAATTCAAAAATGCATATGGAGATATCTCTGTTGATACCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAATTCAAAAATGCATATGGAGATATCTCTGTTGATACCCTGC  550

seq1  TGTGTTTAATATCTTGTCTACAATGATTTACACACTATTTAAGAATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAATATCTTGTCTACAATGATTTACACACTATTTAAGAATCAGA  600

seq1  GACTTGGTATATCCCTATAAAAGTCCAATGAAAGTATACGGAAATAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTATATCCCTATAAAAGTCCAATGAAAGTATACGGAAATAGGAA  650

seq1  ATATATTTATCCATAATCTTCATGAATTGGTTTAGGCCAACAAGAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTATCCATAATCTTCATGAATTGGTTTAGGCCAACAAGAATGTA  700

seq1  TTGTATGACACACTATAAGAAAAAACAGTTTATAAATTGAGAAACTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGACACACTATAAGAAAAAACAGTTTATAAATTGAGAAACTTAAT  750

seq1  ATTTTTCATAGCATGTTTTAGCATTAAAACCTTAATATCATGGACTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATAGCATGTTTTAGCATTAAAACCTTAATATCATGGACTCTAT  800

seq1  AGATAATTGTGTATAAGCAATTTTAAGAAAATTCATGAAGGGAGTCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTGTGTATAAGCAATTTTAAGAAAATTCATGAAGGGAGTCTAGC  850

seq1  CAGCTGAAGCCTAGTGAGCATGG-TTCTGGCAGACCTTGTCCTTCTCTCC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGCTGAAGCCTAGTGAGCATGGTTTCTGGCAGACCTTGTCCTTCTCTCC  900

seq1  CATTCCCTTTACTTGCTAAAAACTGTTAAGATTACA-TTTCTCAAGCTAG  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATTCCCTTTACTTGCTAAAAACTGTTAAGATTACATTTTCTCAAGCTAG  950

seq1  CCA-CCAAGGTCTATACCTTT-ATTTGGCCACTTCCTTCTTCTGAGGCTA  996
      ||| ||| ||||||||||||| ||||||||||||||||||||||| ||| 
seq2  CCACCCAGGGTCTATACCTTTAATTTGGCCACTTCCTTCTTCTGA-GCT-  998

seq1  ATCACCAACGTCCAGCTATCAACATATTGATGTACAACAATCAAAACCTC  1046
      ||||||||||| |||||||| |||||||||||||||   ||| |||||||
seq2  ATCACCAACGTTCAGCTATC-ACATATTGATGTACA--CATC-AAACCTC  1044

seq1  CCACACCTAATTAACATGCCCAATCAAAATTAAATACCTCATCCTAGCAC  1096
      ||||||||| |  ||||| |||||||||  |||||||||||| |||||||
seq2  CCACACCTAGT--ACATG-CCAATCAAA--TAAATACCTCATTCTAGCAC  1089

seq1  AGGGTTTTCCATTTTACCTTTATAACCTGCCATTTGCCTAAGGGACATCT  1146
      |||| ||||   |||||| |||| | ||||||||||||||  ||||||||
seq2  AGGGATTTC--ATTTACC-TTAT-AGCTGCCATTTGCCTA--GGACATCT  1133

seq1  CCGTCTATCTC---TTCTTTAT  1165
      ||||| |||||   | ||||||
seq2  CCGTC-ATCTCCTTTCCTTTAT  1154


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