BAC Information

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BAC

Clone NameB6Ng01-276N23
Chromosome6 (Build37)
Map Location 23,136,681 - 23,283,281
singlet/doubletdoublet
Overlap geneEG384356, Fezf1, Cadps2
Upstream geneA430107O13Rik, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N23.bB6Ng01-276N23.g
ACCGA077543GA077544
length1,1271,181
definitionB6Ng01-276N23.b B6Ng01-276N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,282,153 - 23,283,281)(23,136,681 - 23,137,895)
sequence
gaattcaatgtaatagttttgcttattctaataaatttcaatttattaaa
tctttttatacattgtttttaatcatattctttcccctcccccactacaa
gagccttttcacctccccacctacctacccactaacctccaagttataaa
ttggaaagacaacaataacaaaaatgcaagtcaaaacaagaaaatgaatg
cagtacttcccgaatatatttaaagacaacacttgctagacgtacctttg
agtcaaccattatttaatcttagaatcagtcagtgcaatgtctaataaca
acattgaactgaatcattttagatttctgccttttagtaagctgtgtctt
tactgcccaaacacctaatctctctgtaaagtagcttttgacttgaagaa
ttgcagattcatttggaggtgtaataattttaaggatcttggtaaagtaa
aatgttaacagtggataagatgctcaagatggagaacctagagttcttcc
tttctatttttctttctttttttctttttttaatgctatactatatgaag
taaggtttagtcacatagttttgctgtaatgcaatgtaaaacgttctagc
tttagtaaggatgatactgtcagaatacaaatttacttggaaagcattca
ctgtgtatctaagtcttaaaagatatcaatgcactgatcctaggttgaca
gatggaggagtagatggacaaactgacaggcaatattttatggtaaccta
aataaaggagtgacaattttataatatagagagttacatattgctttagt
gtccaaccctggttccacttcctaatgactaaatggccttaggtaaattt
cctaatctctctaaactttatcttcttcattaataattaaaaatatttct
ttcttcctagagcttttgtgacagttaaacaatggaaatgtacaatacaa
cttaacacagtgcttgacatttcaaaaacatcatatagaggaggagagat
cttaagcaagatacaccatagatttcattacattgcctaactgggttgtt
ctgggatactgggttgattatttcaggtaaaaaaattattaccccttgaa
gcttagcattctttatttagcaacgtt
gaattctagaacagcctgggctacatggtgagttcctaagtcaaaaaaaa
caaacaaacaaaaaaacaacaacaacaaaaaaaacaaaacaaaaaaaaaa
ccaaaaaaacaaaaaatatatatatactctacatacacatatatgcagac
acatttaagttataatgtcagcataaaggacatcataattttggattttt
gtcccagtctaaacctggcacaagtaggtttttttttttttttaaagtca
tggcagctgttttcaacttcagttttgttccaggaaataatttattaaat
atttcataggaagccatcagagctttaatttgcttcgctcgctagttctc
agcatgctggaaagcatattatagctctgactacgtagtcttggaatttt
gttcacactgttctcgggaagggttgccaaggagaacaggtgaaaatcag
aagtgcgggtctttcccatccagagctcactgctagctccgtctgtaatg
gctggtcacattaaagactaaagtgagtcgttagagtgtgacctttaaat
ctcagaatcttttcatttaaaaaaggcattatttactcaaagggcagcag
gtagcacagaacccactgttccttgcggcattttctgatgcgggcagctt
tctgtcatgtcgagaggagaaaccatgaatggcccagatattagaatgac
caatgacccctcatgggtgtgactgcaacagaaaactagttaaagaacaa
aatcataactaccaaatgtcaccttccaggcatatcccagggaaagcagg
ttttctggaagtgttattctcagaatcaagacccaagccctgagcttggg
atggaggagatccgtcaggtgaaaatggacatgagaaaatgtttgaagac
tcaagattcttcccgtaagccgatcaggcaggctgtgttagctagcacac
accagctcagaagacagacattagaatttacatttttactaacaccttaa
gccaggaaataaaaactcataatgatggatcaatcaaacaatacacctcc
tcggtatatgagcagattttaagctcttgaggaacactggggacagcact
aaatgtgtcatgtgaacaagacgactttccgttactatgtgccatgcatc
agaagacagccccttccagtgcaagaatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23282153_23283281
seq2: B6Ng01-276N23.b_47_1173 (reverse)

seq1  AACGTTGCCTAAATAAAG-ATGCTAAGCTTCAA-GGGTAATATTTTTTTT  48
      ||||||| |||||||||| |||||||||||||| |||||||| |||||||
seq2  AACGTTG-CTAAATAAAGAATGCTAAGCTTCAAGGGGTAATAATTTTTTT  49

seq1  ACCTGAAATATCAAACCCAGTATCCCAG-ACAACCCAGTTAGGCAATGTA  97
      ||||||||||   ||||||||||||||| |||||||||||||||||||||
seq2  ACCTGAAATAATCAACCCAGTATCCCAGAACAACCCAGTTAGGCAATGTA  99

seq1  ATGAAATCTTATTGGTTGTATCTTTGCTTAAGATCTCTCCTCCTCTATAT  147
      |||||||| |||  | |||||| |||||||||||||||||||||||||| 
seq2  ATGAAATC-TAT--GGTGTATC-TTGCTTAAGATCTCTCCTCCTCTATA-  144

seq1  TGATGTTTTTGAAATGTCAAGCACTGTGTTAAGTTGTATTGTACA-TTCC  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATGTTTTTGAAATGTCAAGCACTGTGTTAAGTTGTATTGTACATTTCC  194

seq1  ATTGTTTAACTGTCACAAAAGCTCTAGGAAGAAAGAAATATTTTTAATTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAACTGTCACAAAAGCTCTAGGAAGAAAGAAATATTTTTAATTA  244

seq1  TTAATGAAGAAGATAAAGTTTAGAGAGATTAGGAAATTTACCTAAGGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAGAAGATAAAGTTTAGAGAGATTAGGAAATTTACCTAAGGCCA  294

seq1  TTTAGTCATTAGGAAGTGGAACCAGGGTTGGACACTAAAGCAATATGTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCATTAGGAAGTGGAACCAGGGTTGGACACTAAAGCAATATGTAA  344

seq1  CTCTCTATATTATAAAATTGTCACTCCTTTATTTAGGTTACCATAAAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATATTATAAAATTGTCACTCCTTTATTTAGGTTACCATAAAATA  394

seq1  TTGCCTGTCAGTTTGTCCATCTACTCCTCCATCTGTCAACCTAGGATCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTCAGTTTGTCCATCTACTCCTCCATCTGTCAACCTAGGATCAG  444

seq1  TGCATTGATATCTTTTAAGACTTAGATACACAGTGAATGCTTTCCAAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGATATCTTTTAAGACTTAGATACACAGTGAATGCTTTCCAAGTA  494

seq1  AATTTGTATTCTGACAGTATCATCCTTACTAAAGCTAGAACGTTTTACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATTCTGACAGTATCATCCTTACTAAAGCTAGAACGTTTTACAT  544

seq1  TGCATTACAGCAAAACTATGTGACTAAACCTTACTTCATATAGTATAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACAGCAAAACTATGTGACTAAACCTTACTTCATATAGTATAGCA  594

seq1  TTAAAAAAAGAAAAAAAGAAAGAAAAATAGAAAGGAAGAACTCTAGGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAGAAAAAAAGAAAGAAAAATAGAAAGGAAGAACTCTAGGTTC  644

seq1  TCCATCTTGAGCATCTTATCCACTGTTAACATTTTACTTTACCAAGATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGAGCATCTTATCCACTGTTAACATTTTACTTTACCAAGATCC  694

seq1  TTAAAATTATTACACCTCCAAATGAATCTGCAATTCTTCAAGTCAAAAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTATTACACCTCCAAATGAATCTGCAATTCTTCAAGTCAAAAGC  744

seq1  TACTTTACAGAGAGATTAGGTGTTTGGGCAGTAAAGACACAGCTTACTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACAGAGAGATTAGGTGTTTGGGCAGTAAAGACACAGCTTACTAA  794

seq1  AAGGCAGAAATCTAAAATGATTCAGTTCAATGTTGTTATTAGACATTGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAATCTAAAATGATTCAGTTCAATGTTGTTATTAGACATTGCA  844

seq1  CTGACTGATTCTAAGATTAAATAATGGTTGACTCAAAGGTACGTCTAGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGATTCTAAGATTAAATAATGGTTGACTCAAAGGTACGTCTAGCA  894

seq1  AGTGTTGTCTTTAAATATATTCGGGAAGTACTGCATTCATTTTCTTGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTCTTTAAATATATTCGGGAAGTACTGCATTCATTTTCTTGTTT  944

seq1  TGACTTGCATTTTTGTTATTGTTGTCTTTCCAATTTATAACTTGGAGGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCATTTTTGTTATTGTTGTCTTTCCAATTTATAACTTGGAGGTT  994

seq1  AGTGGGTAGGTAGGTGGGGAGGTGAAAAGGCTCTTGTAGTGGGGGAGGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAGGTAGGTGGGGAGGTGAAAAGGCTCTTGTAGTGGGGGAGGGG  1044

seq1  AAAGAATATGATTAAAAACAATGTATAAAAAGATTTAATAAATTGAAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATGATTAAAAACAATGTATAAAAAGATTTAATAAATTGAAATT  1094

seq1  TATTAGAATAAGCAAAACTATTACATTGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  TATTAGAATAAGCAAAACTATTACATTGAATTC  1127

seq1: chr6_23136681_23137895
seq2: B6Ng01-276N23.g_65_1245

seq1  GAATTCTAGAACAGCCTGGGCTACATGGTGAGTTCCTAAGTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACAGCCTGGGCTACATGGTGAGTTCCTAAGTCAAAAAAAA  50

seq1  CAAACAAACAAAAAAACAACAACAACAAAAAAAACAAAACAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAAACAACAACAACAAAAAAAACAAAACAAAAAAAAAA  100

seq1  CCAAAAAAACAAAAAATATATATATACTCTACATACACATATATGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAACAAAAAATATATATATACTCTACATACACATATATGCAGAC  150

seq1  ACATTTAAGTTATAATGTCAGCATAAAGGACATCATAATTTTGGATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAGTTATAATGTCAGCATAAAGGACATCATAATTTTGGATTTTT  200

seq1  GTCCCAGTCTAAACCTGGCACAAGTAGGTTTTTTTTTTTTTTTAAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTCTAAACCTGGCACAAGTAGGTTTTTTTTTTTTTTTAAAGTCA  250

seq1  TGGCAGCTGTTTTCAACTTCAGTTTTGTTCCAGGAAATAATTTATTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGTTTTCAACTTCAGTTTTGTTCCAGGAAATAATTTATTAAAT  300

seq1  ATTTCATAGGAAGCCATCAGAGCTTTAATTTGCTTCGCTCGCTAGTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAGGAAGCCATCAGAGCTTTAATTTGCTTCGCTCGCTAGTTCTC  350

seq1  AGCATGCTGGAAAGCATATTATAGCTCTGACTACGTAGTCTTGGAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTGGAAAGCATATTATAGCTCTGACTACGTAGTCTTGGAATTTT  400

seq1  GTTCACACTGTTCTCGGGAAGGGTTGCCAAGGAGAACAGGTGAAAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTGTTCTCGGGAAGGGTTGCCAAGGAGAACAGGTGAAAATCAG  450

seq1  AAGTGCGGGTCTTTCCCATCCAGAGCTCACTGCTAGCTCCGTCTGTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCGGGTCTTTCCCATCCAGAGCTCACTGCTAGCTCCGTCTGTAATG  500

seq1  GCTGGTCACATTAAAGACTAAAGTGAGTCGTTAGAGTGTGACCTTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCACATTAAAGACTAAAGTGAGTCGTTAGAGTGTGACCTTTAAAT  550

seq1  CTCAGAATCTTTTCATTTAAAAAAGGCATTATTTACTCAAAGGGCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCTTTTCATTTAAAAAAGGCATTATTTACTCAAAGGGCAGCAG  600

seq1  GTAGCACAGAACCCACTGTTCCTTGCGGCATTTTCTGATGCGGGCAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACAGAACCCACTGTTCCTTGCGGCATTTTCTGATGCGGGCAGCTT  650

seq1  TCTGTCATGTCGAGAGGAGAAACCATGAATGGCCCAGATATTAGAATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGTCGAGAGGAGAAACCATGAATGGCCCAGATATTAGAATGAC  700

seq1  CAATGACCCCTCATGGGTGTGACTGCAACAGAAAACTAGTTAAAGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCCCTCATGGGTGTGACTGCAACAGAAAACTAGTTAAAGAACAA  750

seq1  AATCATAACTACCAAATGTCACCTTCCAGGCATATCCCAGGGAAAGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAACTACCAAATGTCACCTTCCAGGCATATCCCAGGGAAAGCAGG  800

seq1  TTTTCTGGAAGTGTTATTCTCAGAATCAAGACCCAAGCCCTGAGCTT-GG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTCTGGAAGTGTTATTCTCAGAATCAAGACCCAAGCCCTGAGCTTGGG  850

seq1  ATGGAGGAGATCCGTCAGGTGAAAATGGACATGAGAAAATGTTTGAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGATCCGTCAGGTGAAAATGGACATGAGAAAATGTTTGAAGAC  900

seq1  TCAAGATTCTTCCCGTAAGGCGATCAGGCAGGCTGTGTTAGCTAGCACAC  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAAGATTCTTCCCGTAAGCCGATCAGGCAGGCTGTGTTAGCTAGCACAC  950

seq1  ACCAGCTCAGAAGACAGACATTAGAATTTACATTTTTACTTAACA-CTTA  998
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  ACCAGCTCAGAAGACAGACATTAGAATTTACATTTTTAC-TAACACCTTA  999

seq1  AGCCAGGAAATAAAAACTCATAAATGATAGATCAAATCAAAACAATACAC  1048
      ||||||||||||||||||||| |||||| |||| |||| |||||||||||
seq2  AGCCAGGAAATAAAAACTCAT-AATGATGGATC-AATC-AAACAATACAC  1046

seq1  --TCTCGTTAATTATGAAGCAGAATTTTTAAAGCTTCTTTGAGGAACACT  1096
         |||| ||  |||| ||||||   ||| |||||   ||||||||||||
seq2  CTCCTCGGTA--TATG-AGCAGA---TTTTAAGCT--CTTGAGGAACACT  1088

seq1  GGGGAACAGCAACCAAAATGTTGGTCCCATGGTGAAACAAAAGACGACTT  1146
      |||| ||||||  | ||||||  ||  ||| ||||   | ||||||||||
seq2  GGGG-ACAGCA--CTAAATGT--GT--CAT-GTGA---ACAAGACGACTT  1127

seq1  TTCTGTAGCCCCATGGTTGGCGCAAATAGCAGCCAGGAAGAGCAGCCCCT  1196
      | |  ||   | |||  || |    || ||| |   ||||| ||||||||
seq2  TCCGTTA---CTATG--TGCC----AT-GCATC--AGAAGA-CAGCCCCT  1164

seq1  TCCCAGTGAAAGAGATCGC  1215
      | |||||| |||| |||||
seq2  T-CCAGTGCAAGA-ATCGC  1181