MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-276O05
Chromosome	6 (Build37)
Map Location	5,901,943 - 6,047,730
singlet/doublet	doublet
Overlap gene	Dync1i1, Slc25a13
Upstream gene	Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
Downstream gene	EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ppp1r9a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243725 MGI:2442401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pon1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18979 MGI:103295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pon3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269823 MGI:106686
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pon2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330260 MGI:106687
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:65255 MGI:1929751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdk4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27273 MGI:1351481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dync1i1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13426 MGI:107743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50799 MGI:1354721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667462 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667462 MGI:3644294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG667468 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667468 MGI:3644257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 164 ESTs, 10 Proteins pseudo : _no_value

name	LOC667471 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 190 ESTs, 42 Proteins pseudo : _no_value

name	LOC100040096 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040096
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Shfm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20422 MGI:109238
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545826 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 137 ESTs, 4 Proteins pseudo : _no_value

name	Dlx6as (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13397 MGI:1195963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlx5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13395 MGI:101926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Acn9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71238 MGI:1913288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppp1r9a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130685 GeneID:243725 MGI:2442401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1, regulatory (inhibitor) subunit 9A transcript_id : NM_181595.3

name	Pon1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352560 GeneID:18979 MGI:103295
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paraoxonase 1 transcript_id : NM_011134.2

name	Pon3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27370509 GeneID:269823 MGI:106686
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paraoxonase 3 transcript_id : NM_173006.1

name	Pon2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130746 GeneID:330260 MGI:106687
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paraoxonase 2 transcript_id : NM_183308.2

name	Asb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637818 GeneID:65255 MGI:1929751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 4 transcript_id : NM_023048.5

name	Pdk4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130875 GeneID:27273 MGI:1351481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pyruvate dehydrogenase kinase, isoenzyme 4 transcript_id : NM_013743.2

name	Dync1i1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802700 GeneID:13426 MGI:107743
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein cytoplasmic 1 intermediate chain 1 transcript_id : NM_010063.2

name	Slc25a13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131091 GeneID:50799 MGI:1354721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 transcript_id : NM_015829.2

name	EG667462 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254838 GeneID:667462 MGI:3644294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG667462 transcript_id : XM_990672.2

name	LOC100040096 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254841 GeneID:100040096
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040096 transcript_id : XM_001474083.1

name	Shfm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677940 GeneID:20422 MGI:109238
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : split hand/foot malformation (ectrodactyly) type 1 transcript_id : NM_009169.1

name	Dlx5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38569499 GeneID:13395 MGI:101926
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : distal-less homeobox 5 transcript_id : NM_198854.1

name	Dlx5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38524595 GeneID:13395 MGI:101926
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : distal-less homeobox 5 transcript_id : NM_010056.2

name	Acn9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248480 GeneID:71238 MGI:1913288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ACN9 homolog (S. cerevisiae) transcript_id : NM_001077713.1

name	Ppp1r9a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31711997 CCDS:CCDS19897.1 GeneID:243725 MGI:2442401
definition	GO_component : GO:0030864 - cortical actin cytoskeleton [Evidence IDA]; GO:0043197 - dendritic spine [Evidence IDA]; GO:0030175 - filopodium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007015 - actin filament organization [Evidence IPI] codon_start : 1 note : neurabin; neural tissue-specific F-actin binding protein; Neurabin I product : protein phosphatase 1, regulatory (inhibitor) subunit 9A protein_id : NP_853626.1

name	Pon1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7242183 CCDS:CCDS19898.1 GeneID:18979 MGI:103295
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004063 - aryldialkylphosphatase activity [Evidence IEA]; GO:0004064 - arylesterase activity [Evidence IMP]; GO:0008035 - high-density lipoprotein binding [Evidence TAS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005319 - lipid transporter activity [Evidence IEA] GO_process : GO:0008203 - cholesterol metabolism [Evidence TAS] [Evidence IMP]; GO:0008015 - circulation [Evidence TAS]; GO:0009636 - response to toxin [Evidence IMP] codon_start : 1 exception : mismatches in translation product : paraoxonase 1 protein_id : NP_035264.1

name	Pon3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370510 CCDS:CCDS19899.1 GeneID:269823 MGI:106686
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004064 - arylesterase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : paraoxonase 3 protein_id : NP_766594.1

name	Pon2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34303979 CCDS:CCDS19900.1 GeneID:330260 MGI:106687
definition	EC_number : 3.1.1.2 EC_number : 3.1.8.1 GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004063 - aryldialkylphosphatase activity [Evidence IEA]; GO:0004064 - arylesterase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : paraoxonase 2 protein_id : NP_899131.1

name	Asb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17505202 CCDS:CCDS19901.1 GeneID:65255 MGI:1929751
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : ankyrin repeat and SOCS box-containing protein 4 protein_id : NP_075535.1

name	Pdk4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305375 CCDS:CCDS19902.1 GeneID:27273 MGI:1351481
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004712 - protein threonine/tyrosine kinase activity [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA] GO_process : GO:0006086 - acetyl-CoA biosynthesis from pyruvate [Evidence TAS]; GO:0016310 - phosphorylation [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : pyruvate dehydrogenase kinase 4 protein_id : NP_038771.1

name	Dync1i1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753656 CCDS:CCDS19903.1 GeneID:13426 MGI:107743
definition	GO_component : GO:0005868 - cytoplasmic dynein complex [Evidence IEA]; GO:0030286 - dynein complex [Evidence TAS]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 exception : mismatches in translation product : dynein, cytoplasmic, intermediate chain 1 protein_id : NP_034193.1

name	Slc25a13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657583 GeneID:50799 MGI:1354721
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA] [Evidence TAS]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005313 - L-glutamate transporter activity [Evidence IMP] GO_process : GO:0015810 - aspartate transport [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : citrin product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 protein_id : NP_056644.1

name	EG667462 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254839 GeneID:667462 MGI:3644294
definition	codon_start : 1 product : hypothetical protein protein_id : XP_995766.2

name	LOC100040096 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254842 GeneID:100040096
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474133.1

name	Shfm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677941 GeneID:20422 MGI:109238
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0000502 - proteasome complex (sensu Eukaryota) [Evidence ISS]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0008233 - peptidase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP]; GO:0006508 - proteolysis [Evidence ISS] codon_start : 1 product : split hand/foot deleted gene 1 protein_id : NP_033195.1

name	Dlx5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38524596 CCDS:CCDS19905.1 GeneID:13395 MGI:101926
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0007399 - nervous system development [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : distal-less homeobox 5 isoform 1 protein_id : NP_034186.2

name	Dlx5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38569500 GeneID:13395 MGI:101926
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0007399 - nervous system development [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : distal-less homeobox 5 isoform 2 protein_id : NP_942151.1

name	Acn9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248481 GeneID:71238 MGI:1913288
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005758 - mitochondrial intermembrane space [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006094 - gluconeogenesis [Evidence ISS] codon_start : 1 product : ACN9 homolog protein_id : NP_001071181.1

name	(CDS detail)
type	STS
link
xref	UniSTS:235381
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:273730
definition	standard_name : Ppp1r9a

name	(CDS detail)
type	STS
link
xref	UniSTS:185652
definition	standard_name : BB181831

name	(CDS detail)
type	STS
link
xref	UniSTS:144238
definition	standard_name : Pon1

name	(CDS detail)
type	STS
link
xref	UniSTS:125724
definition	standard_name : U32684

name	(CDS detail)
type	STS
link
xref	UniSTS:144236
definition	standard_name : Pon1

name	(CDS detail)
type	STS
link
xref	UniSTS:271848
definition	standard_name : PMC197179P2

name	(CDS detail)
type	STS
link
xref	UniSTS:165448
definition	standard_name : AI786302

name	(CDS detail)
type	STS
link
xref	UniSTS:271849
definition	standard_name : PMC197179P3

name	(CDS detail)
type	STS
link
xref	UniSTS:179333
definition	standard_name : AI481612

name	(CDS detail)
type	STS
link
xref	UniSTS:144239
definition	standard_name : Pon2

name	(CDS detail)
type	STS
link
xref	UniSTS:116577
definition	standard_name : D6Mit166

name	(CDS detail)
type	STS
link
xref	UniSTS:125339
definition	standard_name : MHAa7b6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:265592
definition	standard_name : Asb4

name	(CDS detail)
type	STS
link
xref	UniSTS:165449
definition	standard_name : AV117194

name	(CDS detail)
type	STS
link
xref	UniSTS:179334
definition	standard_name : AW060255

name	(CDS detail)
type	STS
link
xref	UniSTS:179332
definition	standard_name : AV005916

name	(CDS detail)
type	STS
link
xref	UniSTS:163381
definition	standard_name : AJ001418

name	(CDS detail)
type	STS
link
xref	UniSTS:116579
definition	standard_name : D6Mit179

name	(CDS detail)
type	STS
link
xref	UniSTS:130846
definition	standard_name : D6Mit296

name	(CDS detail)
type	STS
link
xref	UniSTS:116578
definition	standard_name : RH90722

name	(CDS detail)
type	STS
link
xref	UniSTS:124217
definition	standard_name : 37.MMHAP14FLE4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:5464
definition	standard_name : RH46992

name	(CDS detail)
type	STS
link
xref	UniSTS:164309
definition	standard_name : AI785475

name	(CDS detail)
type	STS
link
xref	UniSTS:179331
definition	standard_name : AW108044

name	(CDS detail)
type	STS
link
xref	UniSTS:167488
definition	standard_name : RH127277

name	(CDS detail)
type	STS
link
xref	UniSTS:87249
definition	standard_name : RH91820

name	(CDS detail)
type	STS
link
xref	UniSTS:280646
definition	standard_name : DLX5_2316

name	(CDS detail)
type	STS
link
xref	UniSTS:498371
definition	standard_name : Dlx5

name	(CDS detail)
type	STS
link
xref	UniSTS:179335
definition	standard_name : AI385752

name	(CDS detail)
type	STS
link
xref	UniSTS:269979
definition	standard_name : MARC_9717-9718:996688547:1

name	(CDS detail)
type	STS
link
xref	UniSTS:498467
definition	standard_name : Dlx5

name	(CDS detail)
type	STS
link
xref	UniSTS:116582
definition	standard_name : D6Mit139

name	(CDS detail)
type	STS
link
xref	UniSTS:207922
definition	standard_name : AI415012

name	EG667468 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254858 GeneID:667468 MGI:3644257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 164 ESTs, 10 Proteins product : predicted gene, EG667468 pseudo : _no_value transcript_id : XR_032062.1

name	LOC667471 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254840 GeneID:667471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 190 ESTs, 42 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A1 pseudo : _no_value transcript_id : XR_031544.1

name	LOC545826 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254859 GeneID:545826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 137 ESTs, 4 Proteins product : similar to farnesyl pyrophosphate synthase pseudo : _no_value transcript_id : XR_032085.1

name	Dlx6as (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84872134 GeneID:13397 MGI:1195963
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : distal-less homeobox 6, antisense transcript_id : NR_002839.1

clone name	MSMg01-096E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344J10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-174P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409J01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-456L14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-392K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335G09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-276O05.b	B6Ng01-276O05.g
ACC	GA077553	GA077554
length	1,180	998
definition	B6Ng01-276O05.b	B6Ng01-276O05.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(6,046,555 - 6,047,730)	(5,901,943 - 5,902,930)
sequence	gaattcttcatgtatttcctcaaacatcttattttggcttcctcagttca gcccagttgttcgtgctgtaaagaactgcagcgactgtagtgtgtcccaa tgtccttttcccagctgtacacacacacacacacacacacacacacacac acacacgtgcgcgcacgttatactgtctctacaaagctagagtagttttt taaaactataaatttgccaggcatagtggcaggcacctttagtcccagca cttgtgagaaagaggcaggcagatctccatggattgaaggccagcctgtc ctgcatagagtttagagccatgcagagctacatagtgaaagcctgtaaag gacgagagaaggaaaaatgtgtgtgtgtacacgtctgtacatacatacat acacacatacatacatacgtgcttctcacctaacagaatgagtaggcagt gtctcctggcctctgatgtaagcagcagctggtggccacctgtgcccccc tcctctcaccgcctccttgtggagacccacgttcttctcatttctagagc acagggcttcctctcccttgttttccatacctgctgtattcacctccggt tgtcaagttccagaaagttcctttgtaatatcaaggccctgtatatttgt tggtgctcatcactgaatgactgcacagtgagcatttagcaggtctgaga aaggtgttgggaggagaggggaaggagcagactccgtgagataatgaggt ttcctgtattactaacactgctgacttacccaatgtgcaaatggtccgga atgtggaagggaatttactcggggctgatgtggcttattagaagtcggtt cttaaattccgtcacaagttgttctcattaaaggtaatagcagaaaattg cagcagagattgccccagtttcaagtggtgatcccctcaacagagctgtt gatttgtgtagttaatgctaatttattaatacacttctgcttcttgttga ttttagtttgctgcacagttactgggagtcgcccccggaagaagcataaa acttacagtaagtctttggaattggggcttcttatttaaggaaatttacc acagacgcaacagtcctagcaagaattcctctcagatgtcgacaggcttg tgcaccttccaccatgtctaaatggaattt	gaattcaaaagactttaagtcataaaacaaatactaacaaaatgcttaag tcatcaagactgaagcaaggatttatgtgataaagatacactggccagaa tgaggattttcattatgtttgcaaatatttctttagatcaagagccacgt cattactaactctatgtgggacaaattatttattagagtctccaaagtgc gtacatggaccctaattgcccaggaagagtgagagggccaggagaatgtc tttgtgtcttcagggtaacaactatcttactccttttatcatttgaaaat tactaagtcggacactctgaggtccacctgtaatcttttagtattgggga ggctgagacaagagaatgacaggagaactgctcgtgtttcatagcacggc agtacctcaaaaataaataaataaataaataaataaataaataaataagg attaagatttatatagttctcaaatatagaagtgattattgttaaaaaca aaaattacggaagaaatgagcttgtgaaaatagaaaccacgtgctttatt atagattgtaaagtgatgaaactattatacagaagagtttttcaaaagac tgcaactagaacttcaatatgatcccatcattctaattacaaatataaac tgaaaagaattaaacgctgggagagatggctcagttgttaagagcactga ctgctcttccaaaggtcctgagttcaattcccaacaacccacatggtggc tcacaatccatcttaaatgggatctcatactctcttcttgtgtgtctgaa gacagctacagtatactcatataaaataaattaaataaataattcttttt tttaaaaaaggaaataaaaaatttaacacatatccccatagatatatcgt cataccctatgttcatagataaccatacctcacaaaagcaaaaggaagag caacccatagtgtattcgtagtagaataagtcaataaagcaaagtgac
quality values	Open. Hide. 58 31 37 24 58 58 58 62 34 30 54 62 62 56 47 62 62 62 62 62 47 51 54 62 47 47 62 62 62 62 56 42 38 28 28 32 22 28 45 50 49 49 49 43 59 59 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 54 54 56 43 59 59 59 59 62 54 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 59 59 59 54 43 54 56 62 62 62 62 62 62 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 54 62 62 62 62 59 62 59 62 59 62 62 62 59 59 54 54 56 62 59 62 59 59 56 62 59 59 62 59 59 62 62 59 59 62 62 54 62 62 59 56 54 48 43 42 56 50 54 48 48 56 50 54 62 62 62 62 62 59 59 56 56 48 54 59 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 56 59 62 62 59 59 59 62 62 59 62 54 62 59 59 59 49 59 62 62 62 46 50 59 59 59 59 56 62 51 59 59 46 62 59 59 50 62 56 62 56 51 51 62 59 56 51 59 59 59 59 62 59 56 59 62 56 59 62 59 62 62 62 59 62 59 62 59 51 59 62 59 62 59 62 62 62 62 59 59 59 48 28 56 59 59 59 59 62 50 62 56 56 59 51 59 62 62 59 51 59 59 62 62 62 62 59 62 62 59 59 62 62 62 62 59 59 59 59 62 56 59 62 62 62 49 59 59 62 62 59 59 59 62 62 59 62 62 62 62 62 62 35 62 59 62 62 62 62 62 62 62 62 59 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 56 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 56 62 56 62 56 62 62 62 56 62 62 62 62 62 62 62 56 56 56 56 45 56 62 56 56 42 62 56 56 62 62 56 56 56 51 62 56 56 56 62 62 62 62 62 62 56 56 62 50 56 56 62 62 56 62 47 56 62 62 56 56 56 56 56 43 56 56 33 56 62 62 62 62 62 62 62 62 62 62 62 62 62 47 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 52 43 52 52 47 52 54 46 54 52 62 49 54 62 62 62 54 62 52 62 62 62 62 52 54 52 52 52 46 58 54 58 54 54 54 54 52 52 54 52 52 50 54 48 48 52 48 43 46 52 54 49 52 52 54 52 54 58 52 52 52 54 54 54 49 52 54 54 54 54 58 54 43 58 47 54 40 52 54 46 54 54 54 52 48 39 54 52 54 52 52 52 48 54 42 53 47 52 44 39 39 58 50 52 53 50 51 50 54 51 50 48 50 39 41 48 50 53 52 53 40 47 40 46 34 48 48 48 54 46 31 46 52 50 43 50 49 37 37 51 53 46 53 50 54 52 43 49 54 48 48 50 58 58 50 37 51 51 50 46 58 48 50 53 50 52 52 54 28 28 50 39 39 44 50 39 28 40 40 10 25 37 41 50 49 33 8 58 54 34 31 58 32 58 32 38 49 43 50 52 32 58 51 29 39 22 46 58 40 46 51 25 51 54 26 53 52 21 32 26 41 53 53 32 16 35 32 22 41 35 45 42 35 54 51 46 51 38 54 37 31 52 40 51 21 37 43 53 37 35 37 40 46 34 37 53 45 52 44 34 40 47 32 47 52 32 29 51 33 32 47 28 37 29 35 36 25 32 32 31 36 34 34 45 32 34 32 46 41 25 32 31 32 24 27 41 8 40 37 30 31 31 47 31 27 33 31 42 19 40 40 27 32 31 27 42 27 45 31 32 28 30 33 28 31 26 30 31 31 33 33 30 42 31 26 51 28 31 42 29 22 18 16 7 25 39 23 36 38 35 36 21 31 19 27 21 8 9 22 26 33 31 31 36 21 20 25 32 46 42 24 24 21 31 28 24 31 18 31 32 23 31 46 46 20 18 18 43 25 23 21 31 34 19 44 14 26 9 37 30 21 36 36 35 26 18 16 28 38 20 15 22 31 26 26 19 17 28 27 21 37 38 38 30 31 31 20 31 15 14 22 25 18 38 38 37 11 14 31 32 21 48 37 31 6 31 22 32 11 13 6 30 21 32 32 23 15 25 22 33 37 26 34 21 29 12 31 16 16 15 7 22 14 25 22 23 32 29 22 10 25 10 28 28 10 18 8 7 15 31 34 14 10 5 3 19 13 21 27 21 15 21 4 9 11 8 13 12 13 28 7 22 11 6 7 5 10 19 9 17 34 40 28 13 21 15 13 6 5 14 22 6 3 4 9 7 17 26 14 18 13 16 6 6 4 6 6 15 9 16 18 12 18 26 14 5 9 21 17 10 19 7 14 17 3 3 3 6 10 13 10 16 13 10 6 21 8 6 9 6 28 8 7 12 5 7 12 5 12 7 8 4 3 4 4 12 5 16 5 4 5 3 6 5 4 5 1 2 2 4 3 1 1 2 4 4 4 13 7 6 6 6 2 3 7 7 4 7 4 7 12 7 11 2 1 3 4 4 4 16 7 4 14 4 4 8 10 18 7 9 11 12 7 13 4 6 5 5 11 18 8 10 4 12 4 4 13 4	Open. Hide. 62 47 47 41 62 47 43 62 62 62 16 39 31 22 20 18 13 20 20 21 21 27 49 56 56 62 62 51 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 41 34 33 43 48 62 54 50 62 62 62 62 62 54 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 59 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 54 62 62 62 62 56 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 56 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 42 45 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 47 62 62 62 62 62 62 58 58 58 58 52 58 40 58 58 54 58 58 58 48 54 54 58 58 54 58 58 54 46 58 54 54 49 58 54 54 58 49 52 46 58 58 52 54 58 54 53 54 58 52 54 52 52 50 58 58 52 52 54 36 58 54 54 54 58 58 41 41 58 52 58 52 32 47 50 49 47 51 25 42 42 34 54 29 45 30 42 33 41 21 51 51 34 52 46 42 26 30 33 47 33 33 40 44 34 58 29 46 40 39 41 28 28 34 41 51 46 46 42 46 42 40 15 10 50 34 32 48 13 19 50 40 52 51 25 39 39 40 26 22 26 35 35 27 24 28 15 20 21 27 28 52 12 17 52 29 37 58 29 22 58 51 31 29 30 30 24 16 16 8 52 39 39 42 35 22 27 22 31 30 30 35 54 32 47 35 45 40 32 21 18 24 39 42 49 50 41 25 30 47 25 33 53 17 35 28 51 13 25 26 35 41 52 33 46 37 37 32 42 42 33 33 12 13 9 27 24 32 28 34 35 31 35 30 20 14 25 14 17 19 16 21 14 29 13 16 32 27 27 9 6 14 30 14 11 8 10 22 33 13 32 34 17 40 31 18 20 18 13 21 18 18 21 27 29 21 24 31 24 29 23 26 25 29 16 24 13 26 27 24 20 33 12 29 9 29 7 37 29 28 14 6 22 6 43 18 21 31 15 15 26 15 11 24 19 31 12 31 31 30 9 14 14 33 27 31 13 6 22 15 8 12 11 31 12 21 29 8 9 20 8 19 15 10 8 7 6 27 18 27 18 6 5 11 20 15 10 16 9 28 17 17 25 27 18 11 16 17 8 9 7 7 9 30 15 15 11 19 31 6 17 15 8 11 7 10 13 26 14 13 10 13 5 18 38 12 20 34 31 22 10 11 32 20 30 38 25 22 29 27 16

Alignment Information

BAC End 1

BAC End 2

seq1: chr6_6046555_6047730
seq2: B6Ng01-276O05.b_45_1224 (reverse)

seq1  AAATTC--ATTAG-CATGGTGGAAGGACCACAAACCTG-CTGCATCCTAG  46
      ||||||   |||| ||||||||||||  ||||| |||| |  ||||  ||
seq2  AAATTCCATTTAGACATGGTGGAAGGTGCACAAGCCTGTCGACATCTGAG  50

seq1  AAGAATACCTGCTA-GACTGTTGCGTCTGT-GTAAATTTCCTT-AATAAG  93
      | |||| | ||||| ||||||||||||||| |||||||||||| ||||||
seq2  AGGAATTCTTGCTAGGACTGTTGCGTCTGTGGTAAATTTCCTTAAATAAG  100

seq1  AAGCCCCAATT-CAAAGACTTACTGTAAGTTTTATGGCCTTCT--CCGGG  140
      ||||||||||| ||||||||||||||||||||||||  |||||  | |||
seq2  AAGCCCCAATTCCAAAGACTTACTGTAAGTTTTATG--CTTCTTCCGGGG  148

seq1  GCGACTCCCAGTAACTGTGGCAGCAAACCTAAAAATCAACAAGAAGCAGA  190
      |||||||||||||||||| |||||||||   |||||||||||||||||||
seq2  GCGACTCCCAGTAACTGT-GCAGCAAAC--TAAAATCAACAAGAAGCAGA  195

seq1  AGTGTATTAAATAAATTAGCATTAACTACACAAATCAACAGCTCTGTTGA  240
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATT-AATAAATTAGCATTAACTACACAAATCAACAGCTCTGTTGA  244

seq1  GGGGATCACCACTTGAAAACTGGGGCAATCTCTGCTGCAATTTTCTGCTA  290
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGGATCACCACTTG-AAACTGGGGCAATCTCTGCTGCAATTTTCTGCTA  293

seq1  TTACCTTTAATGAGAAC-ACTTGTGACGGAATTTAAGAACCGACTTCTAA  339
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTACCTTTAATGAGAACAACTTGTGACGGAATTTAAGAACCGACTTCTAA  343

seq1  TAAGCCACATCAGCCCCGAGTAAATTCCCTTCCACATTCCGGACCATTTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACATCAGCCCCGAGTAAATTCCCTTCCACATTCCGGACCATTTG  393

seq1  CACATTGGGTAAGTCAGCAGTGTTAGTAATACAGGAAACCTCATTATCTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGTAAGTCAGCAGTGTTAGTAATACAGGAAACCTCATTATCTC  443

seq1  ACGGAGTCTGCTCCTTCCCCTCTCCTCCCAACACCTTTCTCAGACCTGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTCTGCTCCTTCCCCTCTCCTCCCAACACCTTTCTCAGACCTGCT  493

seq1  AAATGCTCACTGTGCAGTCATTCAGTGATGAGCACCAACAAATATACAGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCACTGTGCAGTCATTCAGTGATGAGCACCAACAAATATACAGG  543

seq1  GCCTTGATATTACAAAGGAACTTTCTGGAACTTGACAACCGGAGGTGAAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATATTACAAAGGAACTTTCTGGAACTTGACAACCGGAGGTGAAT  593

seq1  ACAGCAGGTATGGAAAACAAGGGAGAGGAAGCCCTGTGCTCTAGAAATGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTATGGAAAACAAGGGAGAGGAAGCCCTGTGCTCTAGAAATGA  643

seq1  GAAGAACGTGGGTCTCCACAAGGAGGCGGTGAGAGGAGGGGGGCACAGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACGTGGGTCTCCACAAGGAGGCGGTGAGAGGAGGGGGGCACAGGT  693

seq1  GGCCACCAGCTGCTGCTTACATCAGAGGCCAGGAGACACTGCCTACTCAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAGCTGCTGCTTACATCAGAGGCCAGGAGACACTGCCTACTCAT  743

seq1  TCTGTTAGGTGAGAAGCACGTATGTATGTATGTGTGTATGTATGTATGTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGGTGAGAAGCACGTATGTATGTATGTGTGTATGTATGTATGTA  793

seq1  CAGACGTGTACACACACACATTTTTCCTTCTCTCGTCCTTTACAGGCTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTGTACACACACACATTTTTCCTTCTCTCGTCCTTTACAGGCTTT  843

seq1  CACTATGTAGCTCTGCATGGCTCTAAACTCTATGCAGGACAGGCTGGCCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTAGCTCTGCATGGCTCTAAACTCTATGCAGGACAGGCTGGCCT  893

seq1  TCAATCCATGGAGATCTGCCTGCCTCTTTCTCACAAGTGCTGGGACTAAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCATGGAGATCTGCCTGCCTCTTTCTCACAAGTGCTGGGACTAAA  943

seq1  GGTGCCTGCCACTATGCCTGGCAAATTTATAGTTTTAAAAAACTACTCTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGCCACTATGCCTGGCAAATTTATAGTTTTAAAAAACTACTCTA  993

seq1  GCTTTGTAGAGACAGTATAACGTGCGCGCACGTGTGTGTGTGTGTGTGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAGAGACAGTATAACGTGCGCGCACGTGTGTGTGTGTGTGTGTG  1043

seq1  TGTGTGTGTGTGTGTGTGTACAGCTGGGAAAAGGACATTGGGACACACTA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTACAGCTGGGAAAAGGACATTGGGACACACTA  1093

seq1  CAGTCGCTGCAGTTCTTTACAGCACGAACAACTGGGCTGAACTGAGGAAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGCTGCAGTTCTTTACAGCACGAACAACTGGGCTGAACTGAGGAAG  1143

seq1  CCAAAATAAGATGTTTGAGGAAATACATGAAGAATTC  1176
      |||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAGATGTTTGAGGAAATACATGAAGAATTC  1180

seq1: chr6_5901943_5902930
seq2: B6Ng01-276O05.g_68_1065

seq1  GAATTCAAAAGACTTTAAGTCATAAAACAAATACTAACAAAATGCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGACTTTAAGTCATAAAACAAATACTAACAAAATGCTTAAG  50

seq1  TCATCAAGACTGAAGCAAGGATTTATGTGATAAAGATACACTGGCCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGACTGAAGCAAGGATTTATGTGATAAAGATACACTGGCCAGAA  100

seq1  TGAGGATTTTCATTATGTTTGCAAATATTTCTTTAGATCAAGAGCCACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTTTCATTATGTTTGCAAATATTTCTTTAGATCAAGAGCCACGT  150

seq1  CATTACTAACTCTATGTGGGACAAATTATTTATTAGAGTCTCCAAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTAACTCTATGTGGGACAAATTATTTATTAGAGTCTCCAAAGTGC  200

seq1  GTACATGGACCCTAATTGCCCAGGAAGAGTGAGAGGGCCAGGAGAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGACCCTAATTGCCCAGGAAGAGTGAGAGGGCCAGGAGAATGTC  250

seq1  TTTGTGTCTTCAGGGTAACAACTATCTTACTCCTTTTATCATTTGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTTCAGGGTAACAACTATCTTACTCCTTTTATCATTTGAAAAT  300

seq1  TACTAAGTCGGACACTCTGAGGTCCACCTGTAATCTTTTAGTATTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTCGGACACTCTGAGGTCCACCTGTAATCTTTTAGTATTGGGGA  350

seq1  GGCTGAGACAAGAGAATGACAGGAGAACTGCTCGTGTTTCATAGCACGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGACAAGAGAATGACAGGAGAACTGCTCGTGTTTCATAGCACGGC  400

seq1  AGTACCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGG  450

seq1  ATTAAGATTTATATAGTTCTCAAATATAGAAGTGATTATTGTTAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATTTATATAGTTCTCAAATATAGAAGTGATTATTGTTAAAAACA  500

seq1  AAAATTACGGAAGAAATGAGCTTGTGAAAATAGAAACCACGTGCTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACGGAAGAAATGAGCTTGTGAAAATAGAAACCACGTGCTTTATT  550

seq1  ATAGATTGTAAAGTGATGAAACTATTATACAGAAGAGTTTTTCAAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGTAAAGTGATGAAACTATTATACAGAAGAGTTTTTCAAAAGAC  600

seq1  TGCAACTAGAACTTCAATATGATCCCATCATTCTAATTACAAATATAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTAGAACTTCAATATGATCCCATCATTCTAATTACAAATATAAAC  650

seq1  TGAAAAGAATTAAACGCT-GGAGAGATGGCTCAGTTGTTAAGAGCACTGA  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAAAAGAATTAAACGCTGGGAGAGATGGCTCAGTTGTTAAGAGCACTGA  700

seq1  CTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAACAA-CCACATGGTGGC  748
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAACAACCCACATGGTGGC  750

seq1  TCACAA-CCATCTTAAATGGGATCTCATACTCTCTTCTTGTGTGTCTGAA  797
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCCATCTTAAATGGGATCTCATACTCTCTTCTTGTGTGTCTGAA  800

seq1  GACAGCTACAGTATACTCATATAAAATAAA-TAAATAAATAAATC-TTTT  845
      |||||||||||||||||||||||||||||| ||||||||||| || ||||
seq2  GACAGCTACAGTATACTCATATAAAATAAATTAAATAAATAATTCTTTTT  850

seq1  TTTAAAAAAGGAAATAAAAAATTAAACACATAT-CCCAAAGATATATCGT  894
      ||||||||||||||||||||||| ||||||||| |||| |||||||||||
seq2  TTTAAAAAAGGAAATAAAAAATTTAACACATATCCCCATAGATATATCGT  900

seq1  CATACCC-ATGTTCATAGA-AACCATA-CTCACAAAAGCCAAAGGAAGAA  941
      ||||||| ||||||||||| ||||||| ||||||||||| |||||||| |
seq2  CATACCCTATGTTCATAGATAACCATACCTCACAAAAGCAAAAGGAAG-A  949

seq1  GCAACCCA-AGTGTATT-GTAGTAGAA-AAATCAATAAAGCAAAAGTGAC  988
      |||||||| |||||||| ||||||||| || |||||||||| ||||||||
seq2  GCAACCCATAGTGTATTCGTAGTAGAATAAGTCAATAAAGC-AAAGTGAC  998

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information