BAC Information

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BAC

Clone NameB6Ng01-276P10
Chromosome6 (Build37)
Map Location 116,165,868 - 116,166,976
singlet/doubletsinglet
Overlap geneD6Wsu116e
Upstream geneSyn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648
Downstream geneAnubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P10.bB6Ng01-276P10.g
ACCGA077607GA077608
length1,1171,166
definitionB6Ng01-276P10.b B6Ng01-276P10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagagtttaggtcatttgattgatgcccagaaagtaacaaaact
aaggtttaaagcttgtacatcgactgcaaagtctgtatcaaggtagaaca
tgactccgttgacattttgaattaatgtttttggagagggcatgacttta
gagttggtatattggaggcacacactgaaggatattttgtttgtaggaga
agacccgggaacagaaagaaatagatctgatccctaaagtgcaggaggct
gtgaactacgggttacaggtcctggatagcgcgtttgagcaacttgacat
aaaagcggggaattcggactctgaagaggatgatgccaatgagcgggtgg
acctgatccttgaaccaaaggtaaagcgttcagttacagcatgacgacgt
cctgactgctctgctgggcacagggtgtgtaaggcgtgggctgggggtat
tattagcatcccaaattgcccccttctgagagccttacttgacacactga
gcatttcaggggtacaggtaggtaaaagttgcagggcatatgtcttcctc
ctctaaggtttttagtgtgtagtctgcgagaggggcattgacatgagcgc
ccatcctcagaactctgcaggaaaactgttgtacagtcaagaagttaagg
gtaagaattttaactggatttggtttgattttgaattttgatttttaaca
cttaaaatttattattgatggattagtatgggacatatgagacagggttt
cgatgtgtagccctggctatcctggaactcactctgtagaccaggctggc
cttgaattcagaaatccacctgcctctgccccctgagtgctgggattaaa
agcatgcgccaccactgcccggctctgtggatcatttttaagactgaagt
tttatttgatttaattttttattagaaaaacataataatatgtatgtgtg
tgtatgtgtatctcatgttttgaatgtccattaaattgtaaagtgacctc
catctaacttgtgtgtcacatactactttcatggggaagaacacctaaaa
tgccattttattagctgtggaccatcctgtgtatgcctagccttttgatg
ggtaattcctcttaact
gaattctggtacactatgaaagggccaaccctacaaataatagatataga
agaaaagagaagagacctacctaggtctaaggcatggaaaatgaagtcat
gaagaaaatttcccaaatctaaataaaaggatgccaattaaggtgcagga
aactacagaccaaatagacagggccagaaaagaaactccttatgacagac
aatcaaaacgctacattccagaataaggaaaggataacaaggggaaagac
caagtcacagaaagaccgcctgtcacaatggcacctggcttttcagagga
gactgcaggctggaagggcctggacagatgtttcacaatctctgagagac
cacacgccagcccagactactacacccagcagaacttccaatcacaacta
aaggagaaagaaaaacatttcatgataaaaacagatgtgagcaatttctg
tccaacaatccatcactacagagagtactggaaggaataatttggcctga
agagaagattaactacacccaaaaattacaaacaatcctagaacagttaa
ccaaaagaggtctcaaacaacagaacaggaattaataagcactactgaat
aagaactctcagtgttactggtcccaacttccctattaaaagggaaaata
gacaaactagcagactggattagaaacagaatccacctttatgctgcttc
caagaaacacagctaaccatcaaggacagaaaccaacctaaggtaaaaga
atggagaaagatattccaagtaaataaaaccaagaagtaaaagccacata
gaaatgcagtatcgagcaaaataaatttcaaaacaaaattaatcagaaag
tacatgaaagaacactacacacactactgaaaagaaaaatttactatgag
atattataactctaaacatttattcacaaaaccccccacttccataaaac
aaacactactgtatctaaccacacattgatgccaatctcaccagtagaca
aatcatctagacaaagattaaaaaagaaactgaaattaaatatatcataa
tcaaatgtatctatagcatctacagagtacttacactaaacaccaacaat
gcacacttgtctcaggactcaatgaatttcttcgaaaattacttcaatac
tagcattacctacggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116165868_116166976
seq2: B6Ng01-276P10.b_46_1162

seq1  GAATTCTAGAGTTTAGGTCATTTGATTGATGCCCAGAAAGTAACAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGTTTAGGTCATTTGATTGATGCCCAGAAAGTAACAAAACT  50

seq1  AAGGTTTAAAGCTTGTACATCGACTGCAAAGTCTGTATCAAGGTAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAAAGCTTGTACATCGACTGCAAAGTCTGTATCAAGGTAGAACA  100

seq1  TGACTCCGTTGACATTTTGAATTAATGTTTTTGGAGAGGGCATGACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCGTTGACATTTTGAATTAATGTTTTTGGAGAGGGCATGACTTTA  150

seq1  GAGTTGGTATATTGGAGGCACACACTGAAGGATATTTTGTTTGTAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTATATTGGAGGCACACACTGAAGGATATTTTGTTTGTAGGAGA  200

seq1  AGACCCGGGAACAGAAAGAAATAGATCTGATCCCTAAAGTGCAGGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCGGGAACAGAAAGAAATAGATCTGATCCCTAAAGTGCAGGAGGCT  250

seq1  GTGAACTACGGGTTACAGGTCCTGGATAGCGCGTTTGAGCAACTTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTACGGGTTACAGGTCCTGGATAGCGCGTTTGAGCAACTTGACAT  300

seq1  AAAAGCGGGGAATTCGGACTCTGAAGAGGATGATGCCAATGAGCGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCGGGGAATTCGGACTCTGAAGAGGATGATGCCAATGAGCGGGTGG  350

seq1  ACCTGATCCTTGAACCAAAGGTAAAGCGTTCAGTTACAGCATGACGACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCCTTGAACCAAAGGTAAAGCGTTCAGTTACAGCATGACGACGT  400

seq1  CCTGACTGCTCTGCTGGGCACAGGGTGTGTAAGGCGTGGGCTGGGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGCTCTGCTGGGCACAGGGTGTGTAAGGCGTGGGCTGGGGGTAT  450

seq1  TATTAGCATCCCAAATTGCCCCCTTCTGAGAGCCTTACTTGACACACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCATCCCAAATTGCCCCCTTCTGAGAGCCTTACTTGACACACTGA  500

seq1  GCATTTCAGGGGTACAGGTAGGTAAAAGTTGCAGGGCATATGTCTTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAGGGGTACAGGTAGGTAAAAGTTGCAGGGCATATGTCTTCCTC  550

seq1  CTCTAAGGTTTTTAGTGTGTAGTCTGCGAGAGGGGCATTGACATGAGCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGTTTTTAGTGTGTAGTCTGCGAGAGGGGCATTGACATGAGCGC  600

seq1  CCATCCTCAGAACTCTGCAGGAAAACTGTTGTACAGTCAAGAAGTTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCAGAACTCTGCAGGAAAACTGTTGTACAGTCAAGAAGTTAAGG  650

seq1  GTAAGAATTTTAACTGGATTTGGTTTGATTTTGAATTTTGATTTTTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTTTAACTGGATTTGGTTTGATTTTGAATTTTGATTTTTAACA  700

seq1  CTTAAAATTTATTATTGATGGATTAGTATGGGACATATGAGACAGGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTTATTATTGATGGATTAGTATGGGACATATGAGACAGGGTTT  750

seq1  CGATGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGC  800

seq1  CTTGAATTCAGAAATCCACCTGCCTCTGCCCCCTGAGTGCTGGGATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTCAGAAATCCACCTGCCTCTGCCCCCTGAGTGCTGGGATTAAA  850

seq1  AGCATGCGCCACCACTGCCCGGCTCTGTGGATCATTTTTAAGACTGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCGCCACCACTGCCCGGCTCTGTGGATCATTTTTAAGACTGAAGT  900

seq1  TTTATTTGATTTAA-TTTTTATTAGAAAAACATAATAATATGTATGTGTG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTATTTGATTTAATTTTTTATTAGAAAAACATAATAATATGTATGTGTG  950

seq1  TGTATGTGTATCTCATGTTTTGAAATGTCCATT-AATTGTAAAGTGA-CT  997
      |||||||||||||||||||||| |||||||||| ||||||||||||| ||
seq2  TGTATGTGTATCTCATGTTTTG-AATGTCCATTAAATTGTAAAGTGACCT  999

seq1  CATTCTAACTTGTGTGTCACATACTTACTTCATGGG--AGAACACCTAAA  1045
      |  ||||||||||||||||||||||   ||||||||  ||||||||||||
seq2  CCATCTAACTTGTGTGTCACATACTACTTTCATGGGGAAGAACACCTAAA  1049

seq1  ATG-CATTTTATTAGCTGT-GACCATCCTGTTGTATTGCTAG-CTTTTGA  1092
      ||| ||||||||||||||| |||||||||| |||||  |||| |||||||
seq2  ATGCCATTTTATTAGCTGTGGACCATCCTG-TGTATGCCTAGCCTTTTGA  1098

seq1  T-GGTATTTCCTC-TAACT  1109
      | |||| |||||| |||||
seq2  TGGGTAATTCCTCTTAACT  1117