BAC Information

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BAC

Clone NameB6Ng01-277B06
Chromosome6 (Build37)
Map Location 135,016,888 - 135,174,088
singlet/doubletdoublet
Overlap geneGprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47
Downstream geneGsg1, Pbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277B06.bB6Ng01-277B06.g
ACCGA077692GA077693
length320116
definitionB6Ng01-277B06.b B6Ng01-277B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,173,769 - 135,174,088)(135,016,888 - 135,017,003)
sequence
tcctgtaacaccagatgtctggcctggccactgtcaagtccactctcaaa
agcagcaactcttttctgcatacagccagctagtagatactgtaggcctc
tctggttgcatggtctccatagcaaccactctctactgttattctagcat
gaaatctgtcacaggaagaacagggaatgactatgctccaacaaaaaaaa
tatatttgggaaaaccaacagtggggagaatttaacccactggccccggt
ttattagcttgagctctaaagactctgtttttcattttcttttattgtag
agtgtgtgtgtgcgtgtgtg
tttagccacttcagatacaatggcctgggaaggtggaggggagggtgagg
ccaacacttcacccttaggggtttttgtactggccatcactgatagagag
aaggaaggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135173769_135174088
seq2: B6Ng01-277B06.b_48_367 (reverse)

seq1  CACACACGCACACACACACTCTACAATAAAAGAAAATGAAAAACAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGCACACACACACTCTACAATAAAAGAAAATGAAAAACAGAGTC  50

seq1  TTTAGAGCTCAAGCTAATAAACCGGGGCCAGTGGGTTAAATTCTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCTCAAGCTAATAAACCGGGGCCAGTGGGTTAAATTCTCCCCAC  100

seq1  TGTTGGTTTTCCCAAATATATTTTTTTTGTTGGAGCATAGTCATTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTTCCCAAATATATTTTTTTTGTTGGAGCATAGTCATTCCCTG  150

seq1  TTCTTCCTGTGACAGATTTCATGCTAGAATAACAGTAGAGAGTGGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGTGACAGATTTCATGCTAGAATAACAGTAGAGAGTGGTTGCT  200

seq1  ATGGAGACCATGCAACCAGAGAGGCCTACAGTATCTACTAGCTGGCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACCATGCAACCAGAGAGGCCTACAGTATCTACTAGCTGGCTGTA  250

seq1  TGCAGAAAAGAGTTGCTGCTTTTGAGAGTGGACTTGACAGTGGCCAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAGAGTTGCTGCTTTTGAGAGTGGACTTGACAGTGGCCAGGCC  300

seq1  AGACATCTGGTGTTACAGGA  320
      ||||||||||||||||||||
seq2  AGACATCTGGTGTTACAGGA  320

seq1: chr6_135016888_135017003
seq2: B6Ng01-277B06.g_71_186

seq1  TTTAGCCACTTCAGATACAATGGCCTGGGAAGGTGGAGGGGAGGGTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCACTTCAGATACAATGGCCTGGGAAGGTGGAGGGGAGGGTGAGG  50

seq1  CCAACACTTCACCCTTAGGGGTTTTTGTACTGGCCATCACTGATAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTTCACCCTTAGGGGTTTTTGTACTGGCCATCACTGATAGAGAG  100

seq1  AAGGAAGGGGAGGGGA  116
      ||||||||||||||||
seq2  AAGGAAGGGGAGGGGA  116