BAC Information

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BAC

Clone NameB6Ng01-277I07
Chromosome6 (Build37)
Map Location 18,202,252 - 18,338,635
singlet/doubletdoublet
Overlap geneCftr, Cttnbp2
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277I07.bB6Ng01-277I07.g
ACCGA078016GA078017
length1,1341,122
definitionB6Ng01-277I07.b B6Ng01-277I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,202,252 - 18,203,387)(18,337,518 - 18,338,635)
sequence
gaattcaacatctgaatcaggattaaaaaacattttgatttagtgttgca
aactagaattctatgtaagtgcaaggtatttaaaagttgcaaataaattc
taataaggttatcttaaactaaacttaatataaaatcttagaagtaattt
attgacaaattattttggtggaatttttgcttcatcatatgtagacttga
tatcatggtatttgtacttcttatatttgaaatgttagtgaggaagaatt
actgcattaaaattgttcaagtcagcacttgagactatgttagctcatct
tttaatgatatattatttcaatagttgacatggctactatgtcaaaaact
aagaaagccaactctttcatgaggtaggattatattttatcagatattaa
atgatatataattttatttaaaatcaaggacccaaaagtccagaaaatat
taatatagaaataaaaaaatggatcagaaaaataagagaacccagaacta
ggaaccatgacagatgatagaggcatcagtaaaccattcatttgatgatt
attgttgccttgtaacaaatgaaagatagggtagacaaatagaaaactgt
gccataagggttttgaacattttattttgaaaatagtattcaagataaca
catatagctagctggtggggagtagatacatttatttcacaaaatctttt
tgcacatgataagtgatatgcacagtgaaaaaaagagaaacgaatggagt
tttttatatgcagcctataaagttgcaaaaactacatacaaatattagac
acttcaaagaagaaaatgcaacacagcaaatatttaaaatctttgtgatt
aagaaaaatgtaaatgaaaagagaaaattagcaaaaattatcataatcat
actagtacaacttagtaaattgtaatttaactctttagtttgctttgtaa
agcaatctggtggtaacttttgaaagtagaacatatgcatttgatatagt
catctactcatgagaatatatctcagctacagatccacaaaagcatatat
gtattcagtgaatataataagtagctttgtaagggaggaaagtgggggag
catgctaagggaagattgcatgcctacattttaa
gaattctccctaaagtttgcctgacacagttttaccttactgtgcaagtt
ctcaacaccagtctaggctaaatctggcattgctcatggtgtttgggtag
agtttcaagatggctttggatagaaaaagagccttaccaagagggttgct
aaagagaataagtcattcccagtgttgaaaacagatattcatgcagctca
gtgtgcaggtaggagttctagggcctaggcacggtgtttagagagggttg
tatagcacaaatcaagaggtgtcccaaggtgctcagttattatgcttgcc
tgtcttggtatcagtctaatctttctgtcctcaaagtacaaattatgtaa
ttcatgttcttgatttgcatttgcacaaaacctaaatggctgaggttgaa
ttatggcttggttgttttaggaaatggaacatccgaatgctattatttcc
atgagaactgctttctggtgggaaccattgccaaagcctgtctccagggc
tctgacctgctggtacagcaacacttccgctgggttcagctgcgctggga
ttgcgagcccattcaaggattgcttcagaggttcttacgaaggaaagtcg
tcagcaaggtaaggaaagcagaagctgcaacctgctgaggtgggagagca
gaggtcttagcggggcttgttttccacttcctgtgtggctgcaggctagg
atattctgttgtttttccggagttgaatggaacaaagaatatagaactca
caacagcttctgcaccatacaaagaaaaaaagcgtgcattttaaagttct
attattagagaaagtatgtagaagttgtaatagtttgtggataatatcat
gtataagaaaaaattaactggttttactggtatcatcaattagttcttaa
gaaacctcatcaagctccagaagttatagaaagttatagaaagtatagac
ttgaaattaaccactgcgcttaagcaaactcaactactacctttggagca
ctgaggacatcactttaacacttatgccatccttaatggaagcttttaga
ctatgaatggtaatgggtttagtgtacctttttctttttaagaattaaaa
agttatagtcttctcagtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18202252_18203387
seq2: B6Ng01-277I07.b_44_1177

seq1  GAATTCAACATCTGAATCAGGATTAAAAAACATTTTGATTTAGTGTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCTGAATCAGGATTAAAAAACATTTTGATTTAGTGTTGCA  50

seq1  AACTAGAATTCTATGTAAGTGCAAGGTATTTAAAAGTTGCAAATAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAATTCTATGTAAGTGCAAGGTATTTAAAAGTTGCAAATAAATTC  100

seq1  TAATAAGGTTATCTTAAACTAAACTTAATATAAAATCTTAGAAGTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGTTATCTTAAACTAAACTTAATATAAAATCTTAGAAGTAATTT  150

seq1  ATTGACAAATTATTTTGGTGGAATTTTTGCTTCATCATATGTAGACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAATTATTTTGGTGGAATTTTTGCTTCATCATATGTAGACTTGA  200

seq1  TATCATGGTATTTGTACTTCTTATATTTGAAATGTTAGTGAGGAAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGTATTTGTACTTCTTATATTTGAAATGTTAGTGAGGAAGAATT  250

seq1  ACTGCATTAAAATTGTTCAAGTCAGCACTTGAGACTATGTTAGCTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTAAAATTGTTCAAGTCAGCACTTGAGACTATGTTAGCTCATCT  300

seq1  TTTAATGATATATTATTTCAATAGTTGACATGGCTACTATGTCAAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATATATTATTTCAATAGTTGACATGGCTACTATGTCAAAAACT  350

seq1  AAGAAAGCCAACTCTTTCATGAGGTAGGATTATATTTTATCAGATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCCAACTCTTTCATGAGGTAGGATTATATTTTATCAGATATTAA  400

seq1  ATGATATATAATTTTATTTAAAATCAAGGACCCAAAAGTCCAGAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATAATTTTATTTAAAATCAAGGACCCAAAAGTCCAGAAAATAT  450

seq1  TAATATAGAAATAAAAAAATGGATCAGAAAAATAAGAGAACCCAGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGAAATAAAAAAATGGATCAGAAAAATAAGAGAACCCAGAACTA  500

seq1  GGAACCATGACAGATGATAGAGGCATCAGTAAACCATTCATTTGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGACAGATGATAGAGGCATCAGTAAACCATTCATTTGATGATT  550

seq1  ATTGTTGCCTTGTAACAAATGAAAGATAGGGTAGACAAATAGAAAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCCTTGTAACAAATGAAAGATAGGGTAGACAAATAGAAAACTGT  600

seq1  GCCATAAGGGTTTTGAACATTTTATTTTGAAAATAGTATTCAAGATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGGGTTTTGAACATTTTATTTTGAAAATAGTATTCAAGATAACA  650

seq1  CATATAGCTAGCTGGTGGGGAGTAGATACATTTATTTCACAAAATCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCTAGCTGGTGGGGAGTAGATACATTTATTTCACAAAATCTTTT  700

seq1  TGCACATGATAAGTGATATGCACAGTGAAAAAAAGAGAAACGAATGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGATAAGTGATATGCACAGTGAAAAAAAGAGAAACGAATGGAGT  750

seq1  TTTTTATATGCAGCCTATAAAGTTGCAAAAACTACATACAAATATTAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATGCAGCCTATAAAGTTGCAAAAACTACATACAAATATTAGAC  800

seq1  ACTTCAAAGAAGAAAATGCAACACAGCAAATATTTAAAATCTTTGTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAGAAGAAAATGCAACACAGCAAATATTTAAAATCTTTGTGATT  850

seq1  AAGAAAAATGTAAATGAAAAGAGAAAATTAGCAAAAATTATCATAATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGTAAATGAAAAGAGAAAATTAGCAAAAATTATCATAATCAT  900

seq1  ACTAGTACAACTTAGTAAATTGTAATTTAACTCTTTAG-TTGCTTTGTAA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTAGTACAACTTAGTAAATTGTAATTTAACTCTTTAGTTTGCTTTGTAA  950

seq1  AGCAATCTGGTGGTAACTTTTGAAAGTAGAACATATGCATTTGATATAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTGGTGGTAACTTTTGAAAGTAGAACATATGCATTTGATATAGT  1000

seq1  CATCCTACTCATGAGAATATATCTTCCAGCTACAGAT-CACAAAAGCATA  1048
      ||| ||||||||||||||||||||  ||||||||||| ||||||||||||
seq2  CAT-CTACTCATGAGAATATATCT--CAGCTACAGATCCACAAAAGCATA  1047

seq1  TATGTATTCAGTG-ATATTAATAGTAGGCTTTGT-AGGGAGG-AAGT-GG  1094
      ||||||||||||| |||| |  |||| ||||||| ||||||| |||| ||
seq2  TATGTATTCAGTGAATATAATAAGTA-GCTTTGTAAGGGAGGAAAGTGGG  1096

seq1  GGAGCAATTGCT-AGGGAAGAATTGCATGCCTCACCATTTTAA  1136
      ||||||  |||| ||||||| |||||||||||   ||||||||
seq2  GGAGCA--TGCTAAGGGAAG-ATTGCATGCCT--ACATTTTAA  1134

seq1: chr6_18337518_18338635
seq2: B6Ng01-277I07.g_66_1187 (reverse)

seq1  ATATA-TGAG-AGACTATAATTTTTTTTATTCTTAAAAAGAAAA--GTAC  46
      ||||| |||| |||||||||  ||||| ||||||||||||||||  ||||
seq2  ATATACTGAGAAGACTATAA-CTTTTTAATTCTTAAAAAGAAAAAGGTAC  49

seq1  ACTAAACCATTTACCA-TCATAGTCTAAAAGCTTTCCATTAA-GATGGCA  94
      ||||||||  |||||| ||||||||||||||| ||||||||| |||||||
seq2  ACTAAACCCATTACCATTCATAGTCTAAAAGC-TTCCATTAAGGATGGCA  98

seq1  TAAGTGGTTAAGTGATGTCCTCAGTGCTCC-AAGGTAGTAGTTGAGTTTT  143
      |||||| | ||||||||||||||||||||| ||||||||||||||| |||
seq2  TAAGTGTTAAAGTGATGTCCTCAGTGCTCCAAAGGTAGTAGTTGAG-TTT  147

seq1  GCTTAAGCGCAGTGGTTAATTTTCAAGTCTATACTTTCTATAACTTTCTA  193
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTTAAGCGCAGTGGTTAA-TTTCAAGTCTATACTTTCTATAACTTTCTA  196

seq1  TAACTTCTGGAGCTTGATGAGGTTTCTTAAGAACT-ATTGATGATACCAG  242
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAACTTCTGGAGCTTGATGAGGTTTCTTAAGAACTAATTGATGATACCAG  246

seq1  TAAAACCAGTTAATTTTTTCTTATACATGATATTATCCACAAACTATTAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGTTAATTTTTTCTTATACATGATATTATCCACAAACTATTAC  296

seq1  AACTTCTACATACTTTCTCTAATAATAGAACTTTAAAATGCACGCTTTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACATACTTTCTCTAATAATAGAACTTTAAAATGCACGCTTTTT  346

seq1  TTCTTTGTATGGTGCAGAAGCTGTTGTGAGTTCTATATTCTTTGTTCCAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTATGGTGCAGAAGCTGTTGTGAGTTCTATATTCTTTGTTCCAT  396

seq1  TCAACTCCGGAAAAACAACAGAATATCCTAGCCTGCAGCCACACAGGAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCGGAAAAACAACAGAATATCCTAGCCTGCAGCCACACAGGAAG  446

seq1  TGGAAAACAAGCCCCGCTAAGACCTCTGCTCTCCCACCTCAGCAGGTTGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACAAGCCCCGCTAAGACCTCTGCTCTCCCACCTCAGCAGGTTGC  496

seq1  AGCTTCTGCTTTCCTTACCTTGCTGACGACTTTCCTTCGTAAGAACCTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGCTTTCCTTACCTTGCTGACGACTTTCCTTCGTAAGAACCTCT  546

seq1  GAAGCAATCCTTGAATGGGCTCGCAATCCCAGCGCAGCTGAACCCAGCGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATCCTTGAATGGGCTCGCAATCCCAGCGCAGCTGAACCCAGCGG  596

seq1  AAGTGTTGCTGTACCAGCAGGTCAGAGCCCTGGAGACAGGCTTTGGCAAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGCTGTACCAGCAGGTCAGAGCCCTGGAGACAGGCTTTGGCAAT  646

seq1  GGTTCCCACCAGAAAGCAGTTCTCATGGAAATAATAGCATTCGGATGTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCACCAGAAAGCAGTTCTCATGGAAATAATAGCATTCGGATGTTC  696

seq1  CATTTCCTAAAACAACCAAGCCATAATTCAACCTCAGCCATTTAGGTTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAAAACAACCAAGCCATAATTCAACCTCAGCCATTTAGGTTTT  746

seq1  GTGCAAATGCAAATCAAGAACATGAATTACATAATTTGTACTTTGAGGAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAATGCAAATCAAGAACATGAATTACATAATTTGTACTTTGAGGAC  796

seq1  AGAAAGATTAGACTGATACCAAGACAGGCAAGCATAATAACTGAGCACCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTAGACTGATACCAAGACAGGCAAGCATAATAACTGAGCACCT  846

seq1  TGGGACACCTCTTGATTTGTGCTATACAACCCTCTCTAAACACCGTGCCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACACCTCTTGATTTGTGCTATACAACCCTCTCTAAACACCGTGCCT  896

seq1  AGGCCCTAGAACTCCTACCTGCACACTGAGCTGCATGAATATCTGTTTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAGAACTCCTACCTGCACACTGAGCTGCATGAATATCTGTTTTC  946

seq1  AACACTGGGAATGACTTATTCTCTTTAGCAACCCTCTTGGTAAGGCTCTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGAATGACTTATTCTCTTTAGCAACCCTCTTGGTAAGGCTCTT  996

seq1  TTTCTATCCAAAGCCATCTTGAAACTCTACCCAAACACCATGAGCAATGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCCAAAGCCATCTTGAAACTCTACCCAAACACCATGAGCAATGC  1046

seq1  CAGATTTAGCCTAGACTGGTGTTGAGAACTTGCACAGTAAGGTAAAACTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTAGCCTAGACTGGTGTTGAGAACTTGCACAGTAAGGTAAAACTG  1096

seq1  TGTCAGGCAAACTTTAGGGAGAATTC  1118
      ||||||||||||||||||||||||||
seq2  TGTCAGGCAAACTTTAGGGAGAATTC  1122