BAC Information

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BAC

Clone NameB6Ng01-277I10
Chromosome6 (Build37)
Map Location 68,466,165 - 68,629,770
singlet/doubletdoublet
Overlap geneIgk, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1
Upstream geneTacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101
Downstream geneEG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277I10.bB6Ng01-277I10.g
ACCGA078021GA078022
length1,1281,135
definitionB6Ng01-277I10.b B6Ng01-277I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,628,663 - 68,629,770)(68,466,165 - 68,467,300)
sequence
gaattctttgtccacatgaatatgaaagtatatttattctcttgggaata
atgggatgtaccctttgttcagtttgggatcatctacttaaacacttttc
ttgtacttgctagtatttaccacaattcttcagcacacatgtttgactag
tgaagatatccttgaatactgtaacagaaaacactgctactgggtactct
ggatgttacatttggttcctacgattggatacataataaatcccaacaaa
attaagcacagtgtaaaaggacatccctagtataccagtcaacactgatc
actgtgttatggatatgttcccattgtagtctttaattgctgagaggaag
ccctcatgatcatcagctgtcctgccagagactgttacccactgtgtaac
cagccaattaataagtccatggggagggtggtagattttgttttgttcac
attctaatcatcaaaaaatggatatctctaagcacaacttcaggatcact
tatcttagtagttcatcacaagctttgtcccaagaatccaggccagacca
agacaacacataattttctgcagagaagcatttcttctataataatcctg
cactactaagaaaaatttgagactatttactaaatttataggtcacataa
tactatccaacacagtatttaattgttaacaagaggaagtaataaagaat
accatattcagtgaaaatacagaagatcatgaggctactaaagtctttta
ctcacccttccataaatttgattagaaaaaaaattgtattttaagtgcaa
tgtgttctgagtttaagataattttattttcttaaaacaaaaaagacagt
ttatctgtactattttaataaactcataggtatattttcgtagctttaga
actgtgttttccagaaattgaaaaactttcctgctagagcataggtgata
ccatgcacatttcaaaaatatgacatttacagttccattgtcattggaca
ggattattcatttcataaccagagactaaaagagctatattattttccct
atgttggcgttcatttatattttaactttgcctttaaagccttggagcta
actatttttgttcacaaatataggagca
gaattcatatgggcctgtctttctataggttctttacttaggggcacatt
tatccagtaggtgattaaagcctatagaatgttagaaaaggcaaaaccag
atttatactaaagtaaaaacgtcctgtttcatttgccatataccattcgc
tgaatccttctggaggtcagtatataaaacatgaatcaaaccaggaaaga
tacagaagacaaggtgactagtgacatgattattttgggagaaattgctt
atgtataaataaatatgatcaaaagacaccttatgagattcttaaggatt
caatttaaaaaaaaaggaaaagggagaagaaaatatcagtctcctcccga
gttttgatatttagattcacatcctcccagatatcagaaatataatagat
gtattaaattcgtgttacctttcaggtatgcagtgtgtcccaggcttatg
agtggaatcttccccaggtgatgttgcttttgcactgtttagatctgaag
gaagatgcctcagttggaatatatgacgctgagggcatagacctgagggt
ttattttgtcctcaatctctggttcctgtactctcttgtctcctgtctgt
catatggtggggaattttgtacaactacagagtctgtcactttatgcttg
ttttgcagaaactgagaatgcaacagctttggagttatgaagacctcctt
taagatctcattgtattggctctgaagagaaatgtatttgtaggtatatg
tatatgtatacgtatgtgtatatgcatgtatatggcatctttgaagtccc
tggagggaccctctgaagtagattctgaagtaggtgcatagtttcctact
gatgaagtaaagggtacaacagattccctaggaagaaagtgatgccaaga
acatgccatgttttcttgaaacatgtagacagaattgaattcacccagaa
agaaattcatgaattgagaggagatgggtcttagtgtagatggttcaact
tgtgtgatttcttatccattttttcatcttctgcacggggtcctcatacc
ttaacgtcagatggttgggttatggtcttgtttccatttcacttgttgct
tgggattcataattatgttctcttagaaactcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68628663_68629770
seq2: B6Ng01-277I10.b_47_1174 (reverse)

seq1  TGCTCCTATA-TTGTG---ACAAATAG-TAGCT-CAAGGCTTTAAAG--C  42
      |||||||||| |||||   | |||||| ||||| |||||||||||||   
seq2  TGCTCCTATATTTGTGAACAAAAATAGTTAGCTCCAAGGCTTTAAAGGCA  50

seq1  AAGT--AAATATAAATG-ACGCCAACATAGGGAAA--TATATAGCTCTTT  87
      ||||  ||||||||||| |||||||||||||||||   ||||||||||||
seq2  AAGTTAAAATATAAATGAACGCCAACATAGGGAAAATAATATAGCTCTTT  100

seq1  TAGTCTCTGGTTATG-AATGA--TATCCTGTCCAATGACAATGGAACTGT  134
      ||||||||||||||| |||||   ||||||||||||||||||||||||||
seq2  TAGTCTCTGGTTATGAAATGAATAATCCTGTCCAATGACAATGGAACTGT  150

seq1  AAATGTCATATTTT--GAATGTGCATGGTATCACCTATGCTCTAGCAGGA  182
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  AAATGTCATATTTTTGAAATGTGCATGGTATCACCTATGCTCTAGCAGGA  200

seq1  AAGTTTTTCAATTTCTGG-AAACACAGTTCTAAAGCTACGAAAATATACC  231
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTTTTTCAATTTCTGGAAAACACAGTTCTAAAGCTACGAAAATATACC  250

seq1  TATGAGTTTATTAAAATAGTACAGATAAACTGTCTTTTTTGTTTTAAGAA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTATTAAAATAGTACAGATAAACTGTCTTTTTTGTTTTAAGAA  300

seq1  AAT-AAATTATCTTAAACTCAGAACACATTGCACTTAAAATACAATTTTT  330
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTATCTTAAACTCAGAACACATTGCACTTAAAATACAATTTTT  350

seq1  TTTCTAATCAAATTTATGGAAGGGTGAGTAAAAGACTTTAGTAGCCTCAT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATCAAATTTATGGAAGGGTGAGTAAAAGACTTTAGTAGCCTCAT  400

seq1  GATCTTCTGTATTTTCACTGAATATGGTATTCTTTATTACTTCCTCTTGT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTGTATTTTCACTGAATATGGTATTCTTTATTACTTCCTCTTGT  450

seq1  TAACAATTAAATACTGTGTTGGATAGTATTATGTGACCTATAAATTTAGT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTAAATACTGTGTTGGATAGTATTATGTGACCTATAAATTTAGT  500

seq1  AAATAGTCTCAAATTTTTCTTAGTAGTGCAGGATTATTATAGAAGAAATG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTCAAATTTTTCTTAGTAGTGCAGGATTATTATAGAAGAAATG  550

seq1  CTTCTCTGCAGAAAATTATGTGTTGTCTTGGTCTGGCCTGGATTCTTGGG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCAGAAAATTATGTGTTGTCTTGGTCTGGCCTGGATTCTTGGG  600

seq1  ACAAAGCTTGTGATGAACTACTAAGATAAGTGATCCTGAAGTTGTGCTTA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTTGTGATGAACTACTAAGATAAGTGATCCTGAAGTTGTGCTTA  650

seq1  GAGATATCCATTTTTTGATGATTAGAATGTGAACAAAACAAAATCTACCA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCCATTTTTTGATGATTAGAATGTGAACAAAACAAAATCTACCA  700

seq1  CCCTCCCCATGGACTTATTAATTGGCTGGTTACACAGTGGGTAACAGTCT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCATGGACTTATTAATTGGCTGGTTACACAGTGGGTAACAGTCT  750

seq1  CTGGCAGGACAGCTGATGATCATGAGGGCTTCCTCTCAGCAATTAAAGAC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGACAGCTGATGATCATGAGGGCTTCCTCTCAGCAATTAAAGAC  800

seq1  TACAATGGGAACATATCCATAACACAGTGATCAGTGTTGACTGGTATACT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGGAACATATCCATAACACAGTGATCAGTGTTGACTGGTATACT  850

seq1  AGGGATGTCCTTTTACACTGTGCTTAATTTTGTTGGGATTTATTATGTAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTCCTTTTACACTGTGCTTAATTTTGTTGGGATTTATTATGTAT  900

seq1  CCAATCGTAGGAACCAAATGTAACATCCAGAGTACCCAGTAGCAGTGTTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCGTAGGAACCAAATGTAACATCCAGAGTACCCAGTAGCAGTGTTT  950

seq1  TCTGTTACAGTATTCAAGGATATCTTCACTAGTCAAACATGTGTGCTGAA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACAGTATTCAAGGATATCTTCACTAGTCAAACATGTGTGCTGAA  1000

seq1  GAATTGTGGTAAATACTAGCAAGTACAAGAAAAGTGTTTAAGTAGATGAT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGGTAAATACTAGCAAGTACAAGAAAAGTGTTTAAGTAGATGAT  1050

seq1  CCCAAACTGAACAAAGGGTACATCCCATTATTCCCAAGAGAATAAATATA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTGAACAAAGGGTACATCCCATTATTCCCAAGAGAATAAATATA  1100

seq1  CTTTCATATTCATGTGGACAAAGAATTC  1108
      ||||||||||||||||||||||||||||
seq2  CTTTCATATTCATGTGGACAAAGAATTC  1128

seq1: chr6_68466165_68467300
seq2: B6Ng01-277I10.g_64_1198

seq1  GAATTCATATGGGCCTGTCTTTCTATAGGTTCTTTACTTAGGGGCACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGGCCTGTCTTTCTATAGGTTCTTTACTTAGGGGCACATT  50

seq1  TATCCAGTAGGTGATTAAAGCCTATAGAATGTTAGAAAAGGCAAAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTAGGTGATTAAAGCCTATAGAATGTTAGAAAAGGCAAAACCAG  100

seq1  ATTTATACTAAAGTAAAAACGTCCTGTTTCATTTGCCATATACCATTCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTAAAGTAAAAACGTCCTGTTTCATTTGCCATATACCATTCGC  150

seq1  TGAATCCTTCTGGAGGTCAGTATATAAAACATGAATCAAACCAGGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTTCTGGAGGTCAGTATATAAAACATGAATCAAACCAGGAAAGA  200

seq1  TACAGAAGACAAGGTGACTAGTGACATGATTATTTTGGGAGAAATTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGACAAGGTGACTAGTGACATGATTATTTTGGGAGAAATTGCTT  250

seq1  ATGTATAAATAAATATGATCAAAAGACACCTTATGAGATTCTTAAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAATAAATATGATCAAAAGACACCTTATGAGATTCTTAAGGATT  300

seq1  CAATTTAAAAAAAAAGGAAAAGGGAGAAGAAAATATCAGTCTCCTCCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAAAAAAAGGAAAAGGGAGAAGAAAATATCAGTCTCCTCCCGA  350

seq1  GTTTTGATATTTAGATTCACATCCTCCCAGATATCAGAAATATAATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATATTTAGATTCACATCCTCCCAGATATCAGAAATATAATAGAT  400

seq1  GTATTAAATTCGTGTTACCTTTCAGGTATGCAGTGTGTCCCAGGCTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAATTCGTGTTACCTTTCAGGTATGCAGTGTGTCCCAGGCTTATG  450

seq1  AGTGGAATCTTCCCCAGGTGATGTTGCTTTTGCACTGTTTAGATCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATCTTCCCCAGGTGATGTTGCTTTTGCACTGTTTAGATCTGAAG  500

seq1  GAAGATGCCTCAGTTGGAATATATGACGCTGAGGGCATAGACCTGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCCTCAGTTGGAATATATGACGCTGAGGGCATAGACCTGAGGGT  550

seq1  TTATTTTGTCCTCAATCTCTGGTTCCTGTACTCTCTTGTCTCCTGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTCCTCAATCTCTGGTTCCTGTACTCTCTTGTCTCCTGTCTGT  600

seq1  CATATGGTGGGGAATTTTGTACAACTACAGAGTCTGTCACTTTATGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTGGGGAATTTTGTACAACTACAGAGTCTGTCACTTTATGCTTG  650

seq1  TTTTGCAGAAACTGAGAATGCAACAGCTTTGGAGTTATGAAGACCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGAAACTGAGAATGCAACAGCTTTGGAGTTATGAAGACCTCCTT  700

seq1  TAAGATCTCATTGTATTGGCTCTGAAGAGAAATGTATTTGTAGGTATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTCATTGTATTGGCTCTGAAGAGAAATGTATTTGTAGGTATATG  750

seq1  TATATGTATACGTATGTGTATATGCATGTATATGGCATCTTTGAAGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATACGTATGTGTATATGCATGTATATGGCATCTTTGAAGTCCC  800

seq1  TGGAGGGACCCTCTGAAGTAGATTCTGAAGTAGGTGCATAGTTTCCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGACCCTCTGAAGTAGATTCTGAAGTAGGTGCATAGTTTCCTACT  850

seq1  GATGAAGTAAAGGGTACAACAGATTCCCTAGGAAGAAAGTGATGCCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTAAAGGGTACAACAGATTCCCTAGGAAGAAAGTGATGCCAAGA  900

seq1  ACATGCCATGTTTTCTTGAAACATGTAGACAGAAATGAATTCAACCCAAG  950
      |||||||||||||||||||||||||||||||||| ||||||||  || ||
seq2  ACATGCCATGTTTTCTTGAAACATGTAGACAGAATTGAATTCA--CCCAG  948

seq1  AAAGAAATTCATGAATTGAGAGGAGAT-GGTCTTAGTGTTAGGATGGTTC  999
      ||||||||||||||||||||||||||| |||||||||||   ||||||||
seq2  AAAGAAATTCATGAATTGAGAGGAGATGGGTCTTAGTGT--AGATGGTTC  996

seq1  AAACTTGTGTGATTTCTTATCAATTTTTTCATTCTCTGCAGGGGGT-CTC  1048
       |||||||||||||||||||| ||||||||||  |||||| ||||| |||
seq2  -AACTTGTGTGATTTCTTATCCATTTTTTCATCTTCTGCACGGGGTCCTC  1045

seq1  ATACCTTACCTTCAGATTGTTTGGTTATGGTCTTGTTTTCA-TTCACTTG  1097
      |||||||| | |||||| ||| |||||||||||||||| || ||||||||
seq2  ATACCTTAACGTCAGATGGTTGGGTTATGGTCTTGTTTCCATTTCACTTG  1095

seq1  TTGCTTGAGATTCATTAATATGTTCTCTTAGAAA-TCAAA  1136
      ||||||| ||||||| | |||||||||||||||| |||||
seq2  TTGCTTGGGATTCATAATTATGTTCTCTTAGAAACTCAAA  1135