BAC Information

Click to search

BAC

Clone NameB6Ng01-277N16
Chromosome6 (Build37)
Map Location 10,565,816 - 10,783,116
singlet/doubletdoublet
Overlap geneLOC100040285
Upstream geneLOC330264
Downstream geneLOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277N16.bB6Ng01-277N16.g
ACCGA078257GA078258
length1,0931,096
definitionB6Ng01-277N16.b B6Ng01-277N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,565,816 - 10,566,912)(10,782,103 - 10,783,116)
sequence
gaattcatcatggtcctctctaaggattaaagaaagtggaatttctaggg
gtgatggggtgtttgtgataattctcagaagtagaaaattattatgtaga
tttgaatctaattacagtgaattattagaaagaggaaagccataactggt
tcagagtattttggtttcaaatttgatgtacatggcccagagaaaatttc
attttaaataccatggtcctaaagaatgttcatatgtccttggttaatag
taacaataaatttctttgcacagagatggtattttagcattgctagttta
gaatatgcaaattatcattaatagaaataatgttgaatatctattatatg
tggtcttacactaaaagttttaaaaagggaataatcaataaaaggccaaa
atgttataatactctagtttatgttctaaaaagaaaataattttcacttg
ttttagcataatagactgccaatacagtattataatggttgaatggttgt
acatagatggatttagagggctaggaaggacctagggatacatttaatgt
tttttttttctttacttttttctttttttgaaaacccaataaaggaggag
aaaaggcagacttataaaacctgaatcaaggaaaggtaaaattaatttac
tattattatatagtatgtcagttttctaaggtagttactaattaatgtat
ttttgtttgcactattattttatttcgttggataattatagtacagtatc
taaaagagtgattgtttgacacaaataacaaatctaaatagttgttattt
taaaattataaacaaaatttgttgaaaaattttatacattccagtgcttg
tagaactagatgtttttggttctagtattatgaaacatctgaggaaagga
aagaaaaatgcattgggataactgggagattggcaagaagtaacaaattt
ttatttattggtaccatctatttattgttttataaaataatttaaaacat
tactttaaaattctcaagccaacagtgaatactagattttacaactttct
tgaccattcagatactgagttctgagggaaagcatctgaaaaa

gaattcatagaactggtcttgaatagttcctggacctttaggaaattaag
ttctagtgattttcataatttttttcaatacttagtgctttctgtatgag
ttttttgggatttgctgtgcaatcatactagagtaaacagaagctcgagt
tgaagtctcactattatctattaactttaaaagtcactgtattttctcca
ccattgccaagataaccatatacattatggtgacaaatggcaaagaaaat
tgttttagtgcatattttatttgagaaggttctatttagttcactgggcc
gtttattaatcaaatttcttgtgttttcagtacttaacttttgcacattt
aaaaaatattttcctatattccatatatgttaatcccctccaaaatttat
atttttgaaataatttacaactctgtaggcttttttaaccttggtatggt
tttactgttgttgtttgcttgtttgttttttacattactccgcagaagcc
tttgattttatgtaacatcaattgtcagtttttaatcttacctctgatgc
tattggagtctttacagaaatttttcctatgcttctattatgacgtattt
tgttagaaaaagtacagtctattaaatacatgaggaccagaatttaataa
aataaggttgggtagggtagtgaaatgacattgcagagaaaatagtcggt
taatgaatatctaacatttaggattctctggactttactaaatgttctta
gaccttactcattatggttttctagcagtttgatttacaagttttacaaa
tcatgcttaaactgatttgcgtagagaataaaatatgtagacctagtttc
atcatttatttcaagaactatttgttgaagaaatactgttttgtactgaa
ttctttttatatctctgtcaaatatagacattggagtcacatagatattt
ttcagatttctattctttacatggtctacattgtgattttagagagtatg
tacagtgtgtatatggctcaaatatatataagatctagtatgtgacatca
cttttccttttctgacaggatggagtggtattcaagttttaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10565816_10566912
seq2: B6Ng01-277N16.b_46_1138

seq1  GAATTCATCATGGTCCTCTCTAAGGATTAAAGAAAGTGGAATTTCTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGGTCCTCTCTAAGGATTAAAGAAAGTGGAATTTCTAGGG  50

seq1  GTGATGGGGTGTTTGTGATAATTCTCAGAAGTAGAAAATTATTATGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGGTGTTTGTGATAATTCTCAGAAGTAGAAAATTATTATGTAGA  100

seq1  TTTGAATCTAATTACAGTGAATTATTAGAAAGAGGAAAGCCATAACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCTAATTACAGTGAATTATTAGAAAGAGGAAAGCCATAACTGGT  150

seq1  TCAGAGTATTTTGGTTTCAAATTTGATGTACATGGCCCAGAGAAAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTATTTTGGTTTCAAATTTGATGTACATGGCCCAGAGAAAATTTC  200

seq1  ATTTTAAATACCATGGTCCTAAAGAATGTTCATATGTCCTTGGTTAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATACCATGGTCCTAAAGAATGTTCATATGTCCTTGGTTAATAG  250

seq1  TAACAATAAATTTCTTTGCACAGAGATGGTATTTTAGCATTGCTAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAAATTTCTTTGCACAGAGATGGTATTTTAGCATTGCTAGTTTA  300

seq1  GAATATGCAAATTATCATTAATAGAAATAATGTTGAATATCTATTATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCAAATTATCATTAATAGAAATAATGTTGAATATCTATTATATG  350

seq1  TGGTCTTACACTAAAAGTTTTAAAAAGGGAATAATCAATAAAAGGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTACACTAAAAGTTTTAAAAAGGGAATAATCAATAAAAGGCCAAA  400

seq1  ATGTTATAATACTCTAGTTTATGTTCTAAAAAGAAAATAATTTTCACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAATACTCTAGTTTATGTTCTAAAAAGAAAATAATTTTCACTTG  450

seq1  TTTTAGCATAATAGACTGCCAATACAGTATTATAATGGTTGAATGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCATAATAGACTGCCAATACAGTATTATAATGGTTGAATGGTTGT  500

seq1  ACATAGATGGATTTAGAGGGCTAGGAAGGACCTAGGGATACATTTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATGGATTTAGAGGGCTAGGAAGGACCTAGGGATACATTTAATGT  550

seq1  TTTTTTTTTCTTTACTTTTTTCTTTTTTTGAAAACCCAATAAAGGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTTACTTTTTTCTTTTTTTGAAAACCCAATAAAGGAGGAG  600

seq1  AAAAGGCAGACTTATAAAACCTGAATCAAGGAAAGGTAAAATTAATTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGACTTATAAAACCTGAATCAAGGAAAGGTAAAATTAATTTAC  650

seq1  TATTATTATATAGTATGTCAGTTTTCTAAGGTAGTTACTAATTAATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATATAGTATGTCAGTTTTCTAAGGTAGTTACTAATTAATGTAT  700

seq1  TTTTGTTTGCACTATTATTTTATTTCGTTGGATAATTATAGTACAGTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGCACTATTATTTTATTTCGTTGGATAATTATAGTACAGTATC  750

seq1  TAAAAGAGTGATTGTTTGACACAAATAACAAATCTAAATAGTTGTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGTGATTGTTTGACACAAATAACAAATCTAAATAGTTGTTATTT  800

seq1  TAAAATTATAAACAAAATTTGTTGAAAAATTTTATACATTCCAGTGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATAAACAAAATTTGTTGAAAAATTTTATACATTCCAGTGCTTG  850

seq1  TAGAACTAGATGTTTTTGGTTCTAGTATTATGAAACATCTGAGGAAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTAGATGTTTTTGGTTCTAGTATTATGAAACATCTGAGGAAAGGA  900

seq1  AAGAAAAATGCATTGGGATAACT-GGAGATTGGCAAGAAGTAACAAA-TT  948
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  AAGAAAAATGCATTGGGATAACTGGGAGATTGGCAAGAAGTAACAAATTT  950

seq1  TTATTTATTGGTACCATCTATTTATTGTTTATAAAAATAATTTAAAACCA  998
      ||||||||||||||||||||||||||||||   |||||||||||||| ||
seq2  TTATTTATTGGTACCATCTATTTATTGTTTTATAAAATAATTTAAAA-CA  999

seq1  TTACTTAAAAATTCTCAAGCAAAACAGTGAATACTAGAATTTTACAACTT  1048
      |||||| |||||||||||||  ||||||||||||||| ||||||||||||
seq2  TTACTTTAAAATTCTCAAGC-CAACAGTGAATACTAG-ATTTTACAACTT  1047

seq1  CCTTTGACACATTCAGATTACTGAGTTCTGAGGGAAAGCATCTGGAAAA  1097
       | ||||| |||||||| |||||||||||||||||||||||||| ||||
seq2  TC-TTGAC-CATTCAGA-TACTGAGTTCTGAGGGAAAGCATCTGAAAAA  1093


seq1: chr6_10782103_10783116
seq2: B6Ng01-277N16.g_166_1160 (reverse)

seq1  AATCTTTAAAACCTTGAATAACCAACTCATTCCTGTCCAGAAAAAGAAAA  50
      ||||||  ||| ||||||||  | ||||  |||||| ||||||| |||||
seq2  AATCTT--AAAACTTGAATA--CCACTCCATCCTGT-CAGAAAAGGAAAA  45

seq1  GTGATGTCACAATACTAGATCTTATATTATATTTTGGAGCCATATTAACA  100
      |||||||||| ||||||||||||||| |||||||  |||||||||  || 
seq2  GTGATGTCAC-ATACTAGATCTTATA-TATATTT--GAGCCATAT--AC-  88

seq1  ACACTGTACATTACTCTCTAAAAATCACAATGTAGACCAATGTAAAGAAT  150
      |||||||||| |||||||| |||||||||||||||||| |||||||||||
seq2  ACACTGTACA-TACTCTCT-AAAATCACAATGTAGACC-ATGTAAAGAAT  135

seq1  AGAAATCTGAAAAATTATCTTATGTGACTCCAATTGTCTAATATTTGACA  200
      |||||||||||||| |||| ||||||||||||| ||||| ||||||||||
seq2  AGAAATCTGAAAAA-TATC-TATGTGACTCCAA-TGTCT-ATATTTGACA  181

seq1  GAGATATAAAAAGAATTCAGTACAAAACAGTATTTCTTCAACAAATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATAAAAAGAATTCAGTACAAAACAGTATTTCTTCAACAAATAGTT  231

seq1  CTTGAAATAAATGATGAAACTAGGTCTACATATTTTATTCTCTACGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATAAATGATGAAACTAGGTCTACATATTTTATTCTCTACGCAAA  281

seq1  TCAGTTTAAGCATGATTTGTAAAACTTGTAAATCAAACTGCTAGAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTAAGCATGATTTGTAAAACTTGTAAATCAAACTGCTAGAAAACC  331

seq1  ATAATGAGTAAGGTCTAAGAACATTTAGTAAAGTCCAGAGAATCCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGTAAGGTCTAAGAACATTTAGTAAAGTCCAGAGAATCCTAAAT  381

seq1  GTTAGATATTCATTAACCGACTATTTTCTCTGCAATGTCATTTCACTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATATTCATTAACCGACTATTTTCTCTGCAATGTCATTTCACTACC  431

seq1  CTACCCAACCTTATTTTATTAAATTCTGGTCCTCATGTATTTAATAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAACCTTATTTTATTAAATTCTGGTCCTCATGTATTTAATAGACT  481

seq1  GTACTTTTTCTAACAAAATACGTCATAATAGAAGCATAGGAAAAATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTTCTAACAAAATACGTCATAATAGAAGCATAGGAAAAATTTCT  531

seq1  GTAAAGACTCCAATAGCATCAGAGGTAAGATTAAAAACTGACAATTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACTCCAATAGCATCAGAGGTAAGATTAAAAACTGACAATTGATG  581

seq1  TTACATAAAATCAAAGGCTTCTGCGGAGTAATGTAAAAAACAAACAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAAATCAAAGGCTTCTGCGGAGTAATGTAAAAAACAAACAAGCA  631

seq1  AACAACAACAGTAAAACCATACCAAGGTTAAAAAAGCCTACAGAGTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAGTAAAACCATACCAAGGTTAAAAAAGCCTACAGAGTTGTA  681

seq1  AATTATTTCAAAAATATAAATTTTGGAGGGGATTAACATATATGGAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCAAAAATATAAATTTTGGAGGGGATTAACATATATGGAATAT  731

seq1  AGGAAAATATTTTTTAAATGTGCAAAAGTTAAGTACTGAAAACACAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATATTTTTTAAATGTGCAAAAGTTAAGTACTGAAAACACAAGAA  781

seq1  ATTTGATTAATAAACGGCCCAGTGAACTAAATAGAACCTTCTCAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTAATAAACGGCCCAGTGAACTAAATAGAACCTTCTCAAATAAA  831

seq1  ATATGCACTAAAACAATTTTCTTTGCCATTTGTCACCATAATGTATATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACTAAAACAATTTTCTTTGCCATTTGTCACCATAATGTATATGG  881

seq1  TTATCTTGGCAATGGTGGAGAAAATACAGTGACTTTTAAAGTTAATAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGGCAATGGTGGAGAAAATACAGTGACTTTTAAAGTTAATAGAT  931

seq1  AATAGTGAGACTTCAACTCGAGCTTCTGTTTACTCTAGTATGATTGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAGACTTCAACTCGAGCTTCTGTTTACTCTAGTATGATTGCACA  981

seq1  GCAAATCCCAAAAA  1014
      ||||||||||||||
seq2  GCAAATCCCAAAAA  995


| Home | SequenceCutter | Blast | Download |