BAC Information

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BAC

Clone NameB6Ng01-278B24
Chromosome6 (Build37)
Map Location 101,185,922 - 101,300,401
singlet/doubletdoublet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278B24.bB6Ng01-278B24.g
ACCGA078451GA078452
length795344
definitionB6Ng01-278B24.b B6Ng01-278B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,185,922 - 101,186,713)(101,300,058 - 101,300,401)
sequence
gaattcatctaaaggcagacacagctgttctggacaaaccacaggtgatg
gctgttaccccaaccaaggccctcaatacagcctcaatgggtccctgcaa
cagaatcactcgagccatatatgccattcttggtacctgacatttagcaa
ctaggaggcataataattggtggttgtctgaagccactaggggctgcaac
agcttactatgcagcaatagataaatgatataatggtcatacatgtctga
aaagctaaaaccatgaacttaaccctaacctagctgactgtagggcccac
aacgatactctgcctgcttagtgatgttaattcactcctttctccctctt
cataagggcaagcacactgtaatcccgctcccggtactgccttgctaggg
actttcagaagtagctatgctctttatcagtctgtcagtcaccaaagaaa
aggtcaggggtagcccgcttattctccacgcagatgggagaaatcccagc
atgtagcaggtgtgccgtcttctcgcctttgatcatttttaggagggctc
tattacacaggctgcctctgtacagcaaacagctccaataagcaaatata
atcacatttcctaattaacttattttattaaaaaaggtggagcagattca
gctcaacaaataccatctcccaccaagaggttcacacattagagcaatca
cagaataataagatcaccatcatcatcatgtattctgtcttcttttaaaa
actgactctggttcaggagacggagaaggaggaggaggaggagga
tttgtgtagatagtaacgtctccatttacttcagcctttgctggctctat
ttgtttatctttgcttatgcgggtacagtgtgcctctcagtagacagaac
accagtctcataagtatgttagtattttttatatccatttgtgtgtctag
gagtgtgttctgcatgcacatgtgtggatggatgtcagagaacaacttgc
aggggagaggtggttctcactctctaccatgcagggtttctcggggattg
aactcaggtggctaggcttggcagcaagcatcttttcctgctgaaccctc
ttgcagcccgagtttttttgttttttttgggggggtggggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101185922_101186713
seq2: B6Ng01-278B24.b_49_843

seq1  GAATTCATCTAAAGGCAGACACAGCTGTTCTGGACAAACCACAGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAAGGCAGACACAGCTGTTCTGGACAAACCACAGGTGATG  50

seq1  GCTGTTACCCCAACCAAGGCCCTCAATACAGCCTCAATGGGTCCCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACCCCAACCAAGGCCCTCAATACAGCCTCAATGGGTCCCTGCAA  100

seq1  CAGAATCACTCGAGCCATATATGCCATTCTTGGTACCTGACATTTAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCACTCGAGCCATATATGCCATTCTTGGTACCTGACATTTAGCAA  150

seq1  CTAGGAGGCATAATAATTGGTGGTTGTCTGAAGCCACTAGGGGCTGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGCATAATAATTGGTGGTTGTCTGAAGCCACTAGGGGCTGCAAC  200

seq1  AGCTTACTATGCAGCAATAGATAAATGATATAATGGTCATACATGTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTATGCAGCAATAGATAAATGATATAATGGTCATACATGTCTGA  250

seq1  AAAGCTAAAACCATGAACTTAACCCTAACCTAGCTGACTGTAGGGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAACCATGAACTTAACCCTAACCTAGCTGACTGTAGGGCCCAC  300

seq1  AACGATACTCTGCCTGCTTAGTGATGTTAATTCACTCCTTTCTCCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATACTCTGCCTGCTTAGTGATGTTAATTCACTCCTTTCTCCCTCTT  350

seq1  CATAAGGGCAAGCACACTGTAATCCCGCTCCCGGTACTGCCTTGCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGCAAGCACACTGTAATCCCGCTCCCGGTACTGCCTTGCTAGGG  400

seq1  ACTTTCAGAAGTAGCTATGCTCTTTATCAGTCTGTCAGTCACCAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGAAGTAGCTATGCTCTTTATCAGTCTGTCAGTCACCAAAGAAA  450

seq1  AGGTCAGGGGTAGCCCGCTTATTCTCCACGCAGATGGGAGAAATCCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGGTAGCCCGCTTATTCTCCACGCAGATGGGAGAAATCCCAGC  500

seq1  ATGTAGCAGGTGTGCCGTCTTCTCGCC-TTGATCA-TTTTAGGAGGGCTC  548
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  ATGTAGCAGGTGTGCCGTCTTCTCGCCTTTGATCATTTTTAGGAGGGCTC  550

seq1  TATTACACAGGCTGCCTCTGTACAGCAAACAGCTCCAATAAGCAAATATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACAGGCTGCCTCTGTACAGCAAACAGCTCCAATAAGCAAATATA  600

seq1  ATCACATTTCCTAATTAACTTA-TTTATTAAAAAAGGTGGAGCAGATTCA  647
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCACATTTCCTAATTAACTTATTTTATTAAAAAAGGTGGAGCAGATTCA  650

seq1  GCTCAACAAATACCATCTCCCACCAAGAGGTTCACACATTAGAGCAAATC  697
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTCAACAAATACCATCTCCCACCAAGAGGTTCACACATTAGAGC-AATC  699

seq1  ACAGAATAATAAGATCACCATCATCATCATGTATTCTGTCTTCATTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGAATAATAAGATCACCATCATCATCATGTATTCTGTCTTCTTTTAAA  749

seq1  AACTGACTCTGG-TCAGGAGACGGAGAAGGAGGAGGAGGAGGAGGA  792
      |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACTGACTCTGGTTCAGGAGACGGAGAAGGAGGAGGAGGAGGAGGA  795

seq1: chr6_101300058_101300401
seq2: B6Ng01-278B24.g_72_415 (reverse)

seq1  ACCCCCCCACCCCCCCAAAAAAAACAAAAAAACTCGGGCTGCAAGAGGGT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCACCCCCCCAAAAAAAACAAAAAAACTCGGGCTGCAAGAGGGT  50

seq1  TCAGCAGGAAAAGATGCTTGCTGCCAAGCCTAGCCACCTGAGTTCAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGAAAAGATGCTTGCTGCCAAGCCTAGCCACCTGAGTTCAATCC  100

seq1  CCGAGAAACCCTGCATGGTAGAGAGTGAGAACCACCTCTCCCCTGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAAACCCTGCATGGTAGAGAGTGAGAACCACCTCTCCCCTGCAAGT  150

seq1  TGTTCTCTGACATCCATCCACACATGTGCATGCAGAACACACTCCTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGACATCCATCCACACATGTGCATGCAGAACACACTCCTAGAC  200

seq1  ACACAAATGGATATAAAAAATACTAACATACTTATGAGACTGGTGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGGATATAAAAAATACTAACATACTTATGAGACTGGTGTTCTG  250

seq1  TCTACTGAGAGGCACACTGTACCCGCATAAGCAAAGATAAACAAATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAGAGGCACACTGTACCCGCATAAGCAAAGATAAACAAATAGAG  300

seq1  CCAGCAAAGGCTGAAGTAAATGGAGACGTTACTATCTACACAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGGCTGAAGTAAATGGAGACGTTACTATCTACACAAA  344