BAC Information

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BAC

Clone NameB6Ng01-278F05
Chromosome6 (Build37)
Map Location 73,616,766 - 73,751,392
singlet/doubletdoublet
Overlap genenone
Upstream geneTcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278F05.bB6Ng01-278F05.g
ACCGA078603GA078604
length1,193341
definitionB6Ng01-278F05.b B6Ng01-278F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,750,171 - 73,751,392)(73,616,766 - 73,617,114)
sequence
gaattctcttgagcagccttgcttatatctaagtaagaaaaaataggcag
ccagaagcacacaattttgctaggacttctaagaacctcacattatccat
aaataaataataaatgcataaaaagaaactgaacttatagatatactgca
caagattatcattttagttaatatatcatattaatatagcataatgtctt
aggatacccttattcttgtgaagagaggatataaccatgactaactgttc
agtatgacttgggcattagtcaattaaagctgatctgaacctggagtctc
tgggtattgttaacatctttcattggtcagagttcatttccttcctggta
ttgttttatggtcagatatttttttcctaacctacttgtagatttcctag
tgggtaaacaatccaatatggtctagtggctgagaatactcactttagga
ttgagcagactgtacttaaattacggctttattgcttaacatctgcgtga
tccgggcagcttgttcaacctgcccaaaccttagtttatgcatctgtaag
tgaaggtaattaccagaccttctcattatggtgggtgaaaggactaaatg
aaagtctctatctaagtacttggccttgaactgaataaggagccaataaa
tgttagctgttactacagctgtagcacaatgactttctctacataaacat
ttactgatacatgacacaaaccattcattcaagtttcaggataacagttg
ttgtcctgatgtattactggagaaccagacttaaacaagtcatgtgattt
acattaggtcccactaccacaaaagatatctctgagatagataatgtctc
agcccaatctaaaaaccagtctttttctttcaaacactaccattaaaata
ctttcatcttctctgtaccttctcatttcttctgttttatttaccaaaga
atgaactttgctgaagcatggctcaccatgcaccccagtgttgcatatct
ctagccttctgctcagtctctagtcatagattctaggtgtctatctatac
tactgaagcagtttaccttctcttctaatatttctaatctacccttactc
ttatctctgtcgtgtgggttactagagacatttctctcttataacaatat
tcacaggaactgcaccttaccggagagagagaatccataatgg

acagagtaactaataaacagaggcattatggcaatcttgtaaaagttgtt
ttatgcaagggaggcattcccacaacctctgaatgtaaacagaatatttt
cagcacagatttactctcacagcagagctgtattcctgaaacgtgacaga
tgtgtatccaaccccttaatctgcttgtctgatcttgaaaagtaaactga
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctctctctctctctctctctctctctc
tctctctctctctctctctctctctctctcttcctccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_73750171_73751392
seq2: B6Ng01-278F05.b_43_1235 (reverse)

seq1  CCATCTATGGGTTTCTCTCTCTCTTCTGTAAGAGTTGCAG-TCCTGTGAA  49
      |||| ||||| |   ||||||||| | |||  || ||||| ||||||| |
seq2  CCAT-TATGGAT---TCTCTCTCTCCGGTA--AGGTGCAGTTCCTGTG-A  43

seq1  ATATTTGTTATAAGAGAGAAATG-CTCTAGTAAAACCACAAAGGACAGAG  98
      ||| ||||||||||||||||||| |||||||||   | || | |||||||
seq2  ATA-TTGTTATAAGAGAGAAATGTCTCTAGTAA---CCCACACGACAGAG  89

seq1  ATAAGAAGTTAGGGGTAGATTAGGAAATATTAAGAAGAGGAAGTTAAAAC  148
      ||||||   || |||||||||| |||||||| |||||| |||| ||||  
seq2  ATAAGA--GTAAGGGTAGATTA-GAAATATT-AGAAGA-GAAGGTAAA--  132

seq1  CTGCCTTCAGTAAGTATAAGAATAAGAACACCTAGAATCTAATGACCTAG  198
      ||| ||||||| ||||||   |||   ||||||||||||| |||| ||| 
seq2  CTG-CTTCAGT-AGTATA--GATA--GACACCTAGAATCT-ATGA-CTA-  173

seq1  GAGACTGAGGCAGAAGGCTAGAGATATGCAACCACCTGGGGTGCATGGTG  248
      |||||||| |||||||||||||||||||||||   |||||||||||||||
seq2  GAGACTGA-GCAGAAGGCTAGAGATATGCAAC--ACTGGGGTGCATGGTG  220

seq1  AGGCCATGCTTCAGCAAAGTTCATTCTTTGGTAAATAAAACAAGAAGAAA  298
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  A-GCCATGCTTCAGCAAAGTTCATTCTTTGGTAAATAAAAC-AGAAGAAA  268

seq1  TGAGAAGGTACAGAGAAGATGAAAGTATTTTAATGGTAGTGTTTGAAAG-  347
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGAAGGTACAGAGAAGATGAAAGTATTTTAATGGTAGTGTTTGAAAGA  318

seq1  AAAAGACTGGTTTTTAGATTGGGCTGAGACATTATCTATCTCAGAGATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGGTTTTTAGATTGGGCTGAGACATTATCTATCTCAGAGATAT  368

seq1  CTTTTGTGGTAGTGGGACCTAATGTAAATCACATGACTTGTTTAAGTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGGTAGTGGGACCTAATGTAAATCACATGACTTGTTTAAGTCTG  418

seq1  GTTCTCCAGTAATACATCAGGACAACAACTGTTATCCTGAAACTTGAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCAGTAATACATCAGGACAACAACTGTTATCCTGAAACTTGAATG  468

seq1  AATGGTTTGTGTCATGTATCAGTAAATGTTTATGTAGAGAAAGTCATTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTGTGTCATGTATCAGTAAATGTTTATGTAGAGAAAGTCATTGT  518

seq1  GCTACAGCTGTAGTAACAGCTAACATTTATTGGCTCCTTATTCAGTTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCTGTAGTAACAGCTAACATTTATTGGCTCCTTATTCAGTTCAA  568

seq1  GGCCAAGTACTTAGATAGAGACTTTCATTTAGTCCTTTCACCCACCATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTACTTAGATAGAGACTTTCATTTAGTCCTTTCACCCACCATAA  618

seq1  TGAGAAGGTCTGGTAATTACCTTCACTTACAGATGCATAAACTAAGGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGTCTGGTAATTACCTTCACTTACAGATGCATAAACTAAGGTTT  668

seq1  GGGCAGGTTGAACAAGCTGCCCGGATCACGCAGATGTTAAGCAATAAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTTGAACAAGCTGCCCGGATCACGCAGATGTTAAGCAATAAAGC  718

seq1  CGTAATTTAAGTACAGTCTGCTCAATCCTAAAGTGAGTATTCTCAGCCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATTTAAGTACAGTCTGCTCAATCCTAAAGTGAGTATTCTCAGCCAC  768

seq1  TAGACCATATTGGATTGTTTACCCACTAGGAAATCTACAAGTAGGTTAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATATTGGATTGTTTACCCACTAGGAAATCTACAAGTAGGTTAGG  818

seq1  AAAAAAATATCTGACCATAAAACAATACCAGGAAGGAAATGAACTCTGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATCTGACCATAAAACAATACCAGGAAGGAAATGAACTCTGAC  868

seq1  CAATGAAAGATGTTAACAATACCCAGAGACTCCAGGTTCAGATCAGCTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGATGTTAACAATACCCAGAGACTCCAGGTTCAGATCAGCTTT  918

seq1  AATTGACTAATGCCCAAGTCATACTGAACAGTTAGTCATGGTTATATCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTAATGCCCAAGTCATACTGAACAGTTAGTCATGGTTATATCCT  968

seq1  CTCTTCACAAGAATAAGGGTATCCTAAGACATTATGCTATATTAATATGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACAAGAATAAGGGTATCCTAAGACATTATGCTATATTAATATGA  1018

seq1  TATATTAACTAAAATGATAATCTTGTGCAGTATATCTATAAGTTCAGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAACTAAAATGATAATCTTGTGCAGTATATCTATAAGTTCAGTTT  1068

seq1  CTTTTTATGCATTTATTATTTATTTATGGATAATGTGAGGTTCTTAGAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGCATTTATTATTTATTTATGGATAATGTGAGGTTCTTAGAAG  1118

seq1  TCCTAGCAAAATTGTGTGCTTCTGGCTGCCTATTTTTTCTTACTTAGATA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAAAATTGTGTGCTTCTGGCTGCCTATTTTTTCTTACTTAGATA  1168

seq1  TAAGCAAGGCTGCTCAAGAGAATTC  1222
      |||||||||||||||||||||||||
seq2  TAAGCAAGGCTGCTCAAGAGAATTC  1193


seq1: chr6_73616766_73617114
seq2: B6Ng01-278F05.g_64_410

seq1  GAATTCACAGAGTAACTAATAAACAGAGGCATTATGGCAATCTTGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGTAACTAATAAACAGAGGCATTATGGCAATCTTGTAAAA  50

seq1  GTTGTTTTATGCAAGGGAGGCATTCCCACAACCTCTGAATGTAAACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTATGCAAGGGAGGCATTCCCACAACCTCTGAATGTAAACAGAA  100

seq1  TATTTTCAGCACAGATTTACTCTCACAGCAGAGCTGTATTCCTGAAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGCACAGATTTACTCTCACAGCAGAGCTGTATTCCTGAAACGT  150

seq1  GACAGATGTGTATCCAACCCCTTAATCTGCTTGTCTGATCTTGAAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGTGTATCCAACCCCTTAATCTGCTTGTCTGATCTTGAAAAGTA  200

seq1  AACTGATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  250

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTC  300
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTT--TCTCTCTCTCTCTCTCTCTC  298

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCCTCC  349
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCCTCC  347


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