BAC Information

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BAC

Clone NameB6Ng01-278H16
Chromosome6 (Build37)
Map Location 42,999,512 - 43,000,346
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444
Downstream geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H16.bB6Ng01-278H16.g
ACCGA078712GA078713
length500835
definitionB6Ng01-278H16.b B6Ng01-278H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgcttttaatagcttcatagtacccattgtgtaaatgtacca
cattttctgtattcattcctctgttgaggaacatctgggttctttccatc
ttctggctattataaataaggctgctctatgaacatagtggagcatgtgt
tcttactacatgttggagaatcttccggggtatattcccacatgtggtac
tgctggatcctccggtagtagtatgtccaatttgcaatggacgattcttt
tttttttcttccatttttttattaggtattttcctcatttacattttcaa
tgctatcccaaaggtcccccatacccacccccctaatcccctacccaccc
actccccctttttggccctggcgttcccctgtactggggcatataccgtt
tgcaagtccaatgggcctctctttgcagtgatggccgactaggccatctt
ttgatacatatgcagctaaagacaagagcgcccgagtactggttagttca

gaattcaaccgagagaatagattgttgctgtaatgaacctaaccacatta
gattttggaggaatgtagaaattttggaactctggaaaataaaagcagtt
ggatgatgtaaacagtgcttaatgggccatcctcataggaaacagaaaga
caataaataagaaatgaataaacaaacaaacataaataaataagcccctg
ctctgccctggaacaaagggaaggctgtcttcagagcaaaattccaccca
gctaagcatgcaacttgtgaaacaaaaagagctgaggaatgctctgctcc
tagaaagcatcatgatatggccaggaagtggaatacagtggtttgaatag
caatgtcccccacaggctcgaatgtttggatattctcagttgctggttct
gtttagggagttctaagatacgatgtgggaggcagaatatgagtgtttaa
aatctccatgttacttatggttcactcactgttttgtgcttgcagttgtt
cgagatgtgagctttctgcttcctgctcccactgccctacctgtcaccat
catatggacacataaatttcttagttacttttctattgctgtgaaaacac
gccatgacgaaaggcaactaataaaagtttattgggagcttagtttcaga
gtgtgagtccatgaccatcatagtgcagagaacgtcaacagcaggcaaac
atggcactggagcagtagctgagagcttattattcttattcaccaggatg
gaggagaaagagggggctaacttatgatagggtgggcttttacacttgaa
aggcttaccctagtgaagaacctccagtggccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42999512_43000346
seq2: B6Ng01-278H16.g_65_899

seq1  GAATTCAACCGAGAGAATAGATTGTTGCTGTAATGAACCTAACCACATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCGAGAGAATAGATTGTTGCTGTAATGAACCTAACCACATTA  50

seq1  GATTTTGGAGGAATGTAGAAATTTTGGAACTCTGGAAAATAAAAGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGAGGAATGTAGAAATTTTGGAACTCTGGAAAATAAAAGCAGTT  100

seq1  GGATGATGTAAACAGTGCTTAATGGGCCATCCTCATAGGAAACAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGTAAACAGTGCTTAATGGGCCATCCTCATAGGAAACAGAAAGA  150

seq1  CAATAAATAAGAAATGAATAAACAAACAAACATAAATAAATAAGCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAAGAAATGAATAAACAAACAAACATAAATAAATAAGCCCCTG  200

seq1  CTCTGCCCTGGAACAAAGGGAAGGCTGTCTTCAGAGCAAAATTCCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTGGAACAAAGGGAAGGCTGTCTTCAGAGCAAAATTCCACCCA  250

seq1  GCTAAGCATGCAACTTGTGAAACAAAAAGAGCTGAGGAATGCTCTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCATGCAACTTGTGAAACAAAAAGAGCTGAGGAATGCTCTGCTCC  300

seq1  TAGAAAGCATCATGATATGGCCAGGAAGTGGAATACAGTGGTTTGAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCATCATGATATGGCCAGGAAGTGGAATACAGTGGTTTGAATAG  350

seq1  CAATGTCCCCCACAGGCTCGAATGTTTGGATATTCTCAGTTGCTGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCCCCACAGGCTCGAATGTTTGGATATTCTCAGTTGCTGGTTCT  400

seq1  GTTTAGGGAGTTCTAAGATACGATGTGGGAGGCAGAATATGAGTGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGAGTTCTAAGATACGATGTGGGAGGCAGAATATGAGTGTTTAA  450

seq1  AATCTCCATGTTACTTATGGTTCACTCACTGTTTTGTGCTTGCAGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATGTTACTTATGGTTCACTCACTGTTTTGTGCTTGCAGTTGTT  500

seq1  CGAGATGTGAGCTTTCTGCTTCCTGCTCCCACTGCCCTACCTGTCACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGTGAGCTTTCTGCTTCCTGCTCCCACTGCCCTACCTGTCACCAT  550

seq1  CATATGGACACATAAATTTCTTAGTTACTTTTCTATTGCTGTGAAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACACATAAATTTCTTAGTTACTTTTCTATTGCTGTGAAAACAC  600

seq1  GCCATGACG-AAGGCAACTAATAAAAGTTTATTGGGAGCTTAGTTTCAGA  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGACGAAAGGCAACTAATAAAAGTTTATTGGGAGCTTAGTTTCAGA  650

seq1  GTGTGAGTCCATGACCATCATAGTGCAGAGAACGTCAACAGCAGGCAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTCCATGACCATCATAGTGCAGAGAACGTCAACAGCAGGCAAAC  700

seq1  ATGGCACTGGAGCAGTAGCTGAGAGCTTA-TATTCTTATTCACAAGAATG  748
      ||||||||||||||||||||||||||||| ||||||||||||| || |||
seq2  ATGGCACTGGAGCAGTAGCTGAGAGCTTATTATTCTTATTCACCAGGATG  750

seq1  AAGGAGAAAGAAGGGGGGCTAAC-TATGATAGTGTGGGCTTTTAACACTT  797
       ||||||||||  |||||||||| |||||||| |||||||||| ||||||
seq2  GAGGAGAAAGA--GGGGGCTAACTTATGATAGGGTGGGCTTTT-ACACTT  797

seq1  GAAAGGCTAACCCTAGTGACAGACCTCCAGTGGCCATA  835
      |||||||| ||||||||||   ||||||||||||||||
seq2  GAAAGGCTTACCCTAGTGAAGAACCTCCAGTGGCCATA  835