BAC Information

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BAC

Clone NameB6Ng01-278K08
Chromosome6 (Build37)
Map Location 33,290,692 - 33,435,522
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278K08.bB6Ng01-278K08.g
ACCGA078835GA078836
length1,1081,118
definitionB6Ng01-278K08.b B6Ng01-278K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,434,414 - 33,435,522)(33,290,692 - 33,291,816)
sequence
gaattcagatgctgtgtgttagcaatgaaattgattgaaatactcccctc
tgcacacactcaagagaaacagataaaacttctatggatctaggaatcta
cagataagcacaacacattgtacatgcagttctaagaagaggtaacaaaa
gagataaaaaggacaagatgcactgccctgagtgtctgtaatcagatact
gaaagtcaatcaacatgcacaaatcttcaattactcccactggcaatcac
tgacaggcctgtttctgggtcatgctccatccatgtaattttcctactga
aatctcagaaaagaaactacattcagagatgatctctagcttttaacatt
aaccgcatttttagcaaactgcccttactcatgcctaatataattgtcta
aattatcctttattaaattccttcttgaaggtaaattttctgaaattatc
tgaattaccttattgctgttaagtaagtcaattattgcagtctacaaaca
aattcacattaaataaataattttgggtgccctcccccattgttaatttt
caaagacttccaaatataaagtcagatgtggcccatttttaacatggtga
gtcgctcccaaatcctactgtctagaggaaaacagtattactatcttttt
cctagacttccgttttcattttgcttctcaaatttgttttctgcatgtag
tcactaccacgggatcacgtgacagaaagcactcaacactgaggacaatt
actcagctataaaactaagcggcgcaactctgggcacactctgtccaagc
ccagcatagagggaaagcccaggcgttcctgagagattccacggaagtaa
gtgaccctagaccaagccagtctccccttatccctttattatttttacaa
aactactaaattatggagggtcacagagtgaaacggaaaggaggagtttc
caaagatactgggtactcccaaactaggaaataacaatgtactctggtcc
taagcgattcaatagcaacttgcttctttatagaagaacacatatttcta
agtcaggcagaccacaaagggcagaagactgaatctcaaccacaactaaa
agggactg

gaattcagaagccttatttggtgaagagggaagggaaagaaccttccaga
gccagggccattcattgctcctcttcgttcactgtgtaccagtagtagct
agcccctcttctttcatagtgcagagggagagttagttagctttctccaa
atagtattctttttacatgaagtaataagttgtaaaaagcatctctctgc
cttttaaaagtagcttttagataactttgaagattaattggagactatgt
cttgtttaaaatgaaagataatactaggccatcggagcttattaagaaaa
tgtttctgtgagatacaggccagcaaagataagaccatcttgataggaaa
cagttgatgactgatttgtttaatgctcatataaaatattaactctgagt
ctcgagcataacagtcgtgaggtaaatactctgtggttactgcctttgtc
agtgggaaaatgcagaactctgatattaagatttcagcaaacagatagta
gaacagaaccgattctctgcattcatgcctcctgtgtgaccacacaaggc
agcttcttggctgtctacctgggtttcccagcctaatccgaggtttccag
gatgttacatttagattcggatagcctcatctcaccataaatactggacg
ttatttgcagcttgatggagtgtctttgtgccatgggttcttgtgttcta
gagcaagactgacagttccttttttagccctctgcctttttgcacagtgg
cacttgaagatgggaaccacagggatgcttcaggtaggaagttaggagca
gcattgggagaacgaatgttttcccttcatgttgaaggcatttttaaaac
ctgccaggtaattgtatatatgtacctttcagctcacagaactgtccttc
cttatgttcttgtgttctggttgataaagtaatactttttgagacacagt
tttgtgtggaaaactttattttgggctctaaaatagagctgtatcataga
tcacatgtttttatatcactcatgtctgtatgttgcctttctccacctcc
tgttctggaagactagttctcatacatcctgacaactttgctgcctgctg
caaactgaggaaagatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33434414_33435522
seq2: B6Ng01-278K08.b_43_1150 (reverse)

seq1  CAGTCCCTTTTAGTTGTGGTTGAGATTCAGTCCTTCTGCCCCTTTGTGGT  50
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CAGTCCCTTTTAGTTGTGGTTGAGATTCAGT-CTTCTG-CCCTTTGTGGT  48

seq1  CTGCCTGACTTAGAAATATGGTGTCTTCTATAAAGAAGCAAGTTGCTATT  100
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  CTGCCTGACTTAGAAATATGTGTTCTTCTATAAAGAAGCAAGTTGCTATT  98

seq1  GAATCGCTTAGGACCAGAGTACATTGTTATTT-CTAGTTTGGGAGTACCC  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATCGCTTAGGACCAGAGTACATTGTTATTTCCTAGTTTGGGAGTACCC  148

seq1  AGTATCTTTGGAAACTCCTCCTTTCCGTTTCACTCTGTGACCCTCCATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTTGGAAACTCCTCCTTTCCGTTTCACTCTGTGACCCTCCATAA  198

seq1  TTTAGTAGTTTTGTAAAAATAATAAAGGGATAAGGGGAGACTGGCTTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGTTTTGTAAAAATAATAAAGGGATAAGGGGAGACTGGCTTGGT  248

seq1  CTAGGGTCACTTACTTCCGTGGAATCTCTCAGGAACGCCTGGGCTTTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTCACTTACTTCCGTGGAATCTCTCAGGAACGCCTGGGCTTTCCC  298

seq1  TCTATGCTGGGCTTGGACAGAGTGTGCCCAGAGTTGCGCCGCTTAGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTGGGCTTGGACAGAGTGTGCCCAGAGTTGCGCCGCTTAGTTTT  348

seq1  ATAGCTGAGTAATTGTCCTCAGTGTTGAGTGCTTTCTGTCACGTGATCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGTAATTGTCCTCAGTGTTGAGTGCTTTCTGTCACGTGATCCC  398

seq1  GTGGTAGTGACTACATGCAGAAAACAAATTTGAGAAGCAAAATGAAAACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTGACTACATGCAGAAAACAAATTTGAGAAGCAAAATGAAAACG  448

seq1  GAAGTCTAGGAAAAAGATAGTAATACTGTTTTCCTCTAGACAGTAGGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAGGAAAAAGATAGTAATACTGTTTTCCTCTAGACAGTAGGATT  498

seq1  TGGGAGCGACTCACCATGTTAAAAATGGGCCACATCTGACTTTATATTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCGACTCACCATGTTAAAAATGGGCCACATCTGACTTTATATTTG  548

seq1  GAAGTCTTTGAAAATTAACAATGGGGGAGGGCACCCAAAATTATTTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTGAAAATTAACAATGGGGGAGGGCACCCAAAATTATTTATTT  598

seq1  AATGTGAATTTGTTTGTAGACTGCAATAATTGACTTACTTAACAGCAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAATTTGTTTGTAGACTGCAATAATTGACTTACTTAACAGCAATA  648

seq1  AGGTAATTCAGATAATTTCAGAAAATTTACCTTCAAGAAGGAATTTAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTCAGATAATTTCAGAAAATTTACCTTCAAGAAGGAATTTAATA  698

seq1  AAGGATAATTTAGACAATTATATTAGGCATGAGTAAGGGCAGTTTGCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAATTTAGACAATTATATTAGGCATGAGTAAGGGCAGTTTGCTAA  748

seq1  AAATGCGGTTAATGTTAAAAGCTAGAGATCATCTCTGAATGTAGTTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCGGTTAATGTTAAAAGCTAGAGATCATCTCTGAATGTAGTTTCTT  798

seq1  TTCTGAGATTTCAGTAGGAAAATTACATGGATGGAGCATGACCCAGAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGATTTCAGTAGGAAAATTACATGGATGGAGCATGACCCAGAAAC  848

seq1  AGGCCTGTCAGTGATTGCCAGTGGGAGTAATTGAAGATTTGTGCATGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTCAGTGATTGCCAGTGGGAGTAATTGAAGATTTGTGCATGTTG  898

seq1  ATTGACTTTCAGTATCTGATTACAGACACTCAGGGCAGTGCATCTTGTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTTCAGTATCTGATTACAGACACTCAGGGCAGTGCATCTTGTCC  948

seq1  TTTTTATCTCTTTTGTTACCTCTTCTTAGAACTGCATGTACAATGTGTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCTCTTTTGTTACCTCTTCTTAGAACTGCATGTACAATGTGTTG  998

seq1  TGCTTATCTGTAGATTCCTAGATCCATAGAAGTTTTATCTGTTTCTCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCTGTAGATTCCTAGATCCATAGAAGTTTTATCTGTTTCTCTTG  1048

seq1  AGTGTGTGCAGAGGGGAGTATTTCAATCAATTTCATTGCTAACACACAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGCAGAGGGGAGTATTTCAATCAATTTCATTGCTAACACACAGC  1098

seq1  ATCTGAATTC  1109
      ||||||||||
seq2  ATCTGAATTC  1108


seq1: chr6_33290692_33291816
seq2: B6Ng01-278K08.g_65_1182

seq1  GAATTCAGAAGCCTTATTTGGTGAAGAGGGAAGGGAAAGAACCTTCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGCCTTATTTGGTGAAGAGGGAAGGGAAAGAACCTTCCAGA  50

seq1  GCCAGGGCCATTCATTGCTCCTCTTCGTTCACTGTGTACCAGTAGTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCCATTCATTGCTCCTCTTCGTTCACTGTGTACCAGTAGTAGCT  100

seq1  AGCCCCTCTTCTTTCATAGTGCAGAGGGAGAGTTAGTTAGCTTTCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCTTCTTTCATAGTGCAGAGGGAGAGTTAGTTAGCTTTCTCCAA  150

seq1  ATAGTATTCTTTTTACATGAAGTAATAAGTTGTAAAAAGCATCTCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTCTTTTTACATGAAGTAATAAGTTGTAAAAAGCATCTCTCTGC  200

seq1  CTTTTAAAAGTAGCTTTTAGATAACTTTGAAGATTAATTGGAGACTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAGTAGCTTTTAGATAACTTTGAAGATTAATTGGAGACTATGT  250

seq1  CTTGTTTAAAATGAAAGATAATACTAGGCCATCGGAGCTTATTAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTAAAATGAAAGATAATACTAGGCCATCGGAGCTTATTAAGAAAA  300

seq1  TGTTTCTGTGAGATACAGGCCAGCAAAGATAAGACCATCTTGATAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGAGATACAGGCCAGCAAAGATAAGACCATCTTGATAGGAAA  350

seq1  CAGTTGATGACTGATTTGTTTAATGCTCATATAAAATATTAACTCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATGACTGATTTGTTTAATGCTCATATAAAATATTAACTCTGAGT  400

seq1  CTCGAGCATAACAGTCGTGAGGTAAATACTCTGTGGTTACTGCCTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGCATAACAGTCGTGAGGTAAATACTCTGTGGTTACTGCCTTTGTC  450

seq1  AGTGGGAAAATGCAGAACTCTGATATTAAGATTTCAGCAAACAGATAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAAATGCAGAACTCTGATATTAAGATTTCAGCAAACAGATAGTA  500

seq1  GAACAGAACCGATTCTCTGCATTCATGCCTCCTGTGTGACCACACAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACCGATTCTCTGCATTCATGCCTCCTGTGTGACCACACAAGGC  550

seq1  AGCTTCTTGGCTGTCTACCTGGGTTTCCCAGCCTAATCCGAGGTTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTGGCTGTCTACCTGGGTTTCCCAGCCTAATCCGAGGTTTCCAG  600

seq1  GATGTTACATTTAGATTCGGATAGCCTCATCTCACCATAAATACTGGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTACATTTAGATTCGGATAGCCTCATCTCACCATAAATACTGGACG  650

seq1  TTATTTGCAGCTTGATGGAGTGTCTTTGTGCCATGGGTTCTTGTGTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCAGCTTGATGGAGTGTCTTTGTGCCATGGGTTCTTGTGTTCTA  700

seq1  GAGCAAGACTGACAGTTCCTTTTTTAGCCCTCTGCCTTTTTGCACAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGACTGACAGTTCCTTTTTTAGCCCTCTGCCTTTTTGCACAGTGG  750

seq1  CACTTGAAGATGGGAACCACAGGGATGCTTCAGGTAGGAAGTTAGGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAGATGGGAACCACAGGGATGCTTCAGGTAGGAAGTTAGGAGCA  800

seq1  GCATTGGGAGAACGAATGTTTTCCCTTCATGTTGAAGGCATTTTTAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGAGAACGAATGTTTTCCCTTCATGTTGAAGGCATTTTTAAAAC  850

seq1  CTGCCAGGTAATTGTATATATGTACCTTTCAGCTCACAGAACTGTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTAATTGTATATATGTACCTTTCAGCTCACAGAACTGTCCTTC  900

seq1  CTTATGTTCTTGTGTTCTGGTTGATAAAGTAATACTTTTTGAGAACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTATGTTCTTGTGTTCTGGTTGATAAAGTAATACTTTTTGAG-ACACAG  949

seq1  TTTTGTGTGGAAAACTTTATTTTGGGCTTCTAAAATTAGGAGGCTGTATC  1000
      ||||||||||||||||||||||||||| ||||||| |||   ||||||||
seq2  TTTTGTGTGGAAAACTTTATTTTGGGC-TCTAAAA-TAG--AGCTGTATC  995

seq1  ATAGATCACATGTTTTTATATCACTCATTGTCTGTAATGTGCCTTT-TCT  1049
      ||||||||||||||||||||||||||| ||||||||   ||||||| || 
seq2  ATAGATCACATGTTTTTATATCACTCA-TGTCTGTATGTTGCCTTTCTCC  1044

seq1  CACTCCTGTTCTGG-AGACTTAAGGTTCTCATACATCTGGACAACTTTGC  1098
        |||||||||||| |||||    |||||||||||||  |||||||||||
seq2  ACCTCCTGTTCTGGAAGACT---AGTTCTCATACATCCTGACAACTTTGC  1091

seq1  TGCCTGCTGCAAACTGAGGAAAGATCC  1125
      |||||||||||||||||||||||||||
seq2  TGCCTGCTGCAAACTGAGGAAAGATCC  1118


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