BAC Information

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BAC

Clone NameB6Ng01-278L10
Chromosome6 (Build37)
Map Location 21,300,091 - 21,498,621
singlet/doubletdoublet
Overlap geneKcnd2, LOC100041343
Upstream geneLOC100040838
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278L10.bB6Ng01-278L10.g
ACCGA078885GA078886
length1,0531,138
definitionB6Ng01-278L10.b B6Ng01-278L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,300,091 - 21,301,144)(21,497,481 - 21,498,621)
sequence
gaattcttgggttggaccatttttcaacttttgggtgctatagtcacatt
ttctgagacccagaaaggagttggaatagggtaacacctctttactcttg
tgtcagtgttctctgtcttcttgcttttaaaagtagaattgtagagatgc
aatttcttatttcatattgggttctacatgttattagaaatcaaatcagt
ttttttttttaaccaacgtttaactcaaaatgccaataataacttcccac
tctacttctaacagtgtttcctggtccttacagccagtggtctacatgaa
agcaaaattactcctaggttagaaccagttggctacaacaattagcactt
cagacagtctatctgccacaagaccccatttataggagacaggcttccac
agtgcaactatgtgaggaacatctaagaattcagattctgtagttttctg
cagacataagtcaccatgaaagggcttgtttttaatgaacttcatgatag
attcagtacctcttgccttccatgggtaaaacctccctgatcgaatactc
tgcttgttatattttccctactggcttctgggagctcatagttttatggt
cccagcctggtgaatagccacggtggtcttactctgtcccattctgattg
ccacaattcttacagcctattaatttttaaaaaaaaatagtaatttgccc
tcattctcattttcacacacaagtccacttacaacccccttcatcaacaa
ccaccgagtaatattcctgaataatagtctatttacatggaacagaaaac
atgttgagagagcataagtagaaaacaagtacaaaacaaaaaataaataa
ttgagtagatataaattatttcagaaaaccaaggtttgcagaatagacta
ggagttaacatacaagcactggaaaggatcagagagtgatgtatgccctt
ctacattttcatggttttcacctgcaggacaacttttcgtttatagaaag
tttgtagggaaacatggatgagcaaagcctccagagtttacacatttctt
tga

gaattctcattctcaaggtgatagcctctttgctttacagttgttacata
tatatgtatagtatataaaaacaatctgctgggtctctttctgttgtttg
aatattgatggttttggaggtgaataatctgcatgatcatatttttgagg
gttttttaaaatcccatttggaggattttgaactggaatctgtttgatac
caagatactgcaaagattacatttacattgtagaatgcttccaaggggta
gaaaatagatagtgaggtagctgattagaggggaatctgtcaagttgatg
ggcttaaaaatgatgatgatttcaatctggaagacagagagatgtaaagc
acagcggaggagtggaactgaaggactctatgactgatgggatgcagcag
aaaggaagagtgcagaatgatagctcatctggacggcaaccgagagaaca
gtggtgcaacctttaaaggggcatacagaaggcaggatctcatgagaagg
aaaacccatactgcctcagtaggctagtacttagcggatgcactcttcta
agccctgggaagaatcagttgattacatttctcagcattttaaacctggc
ccttgattgagttcacacagtcatcagagagcctcttttcgttcttcctt
taatatatatgtgtctatgctgcattttcaattttaagtatgactttttc
tttaaatgagaatgatatgatttttctttgatgactaggaaaattgtact
gtgcgttcctctaacacatatgtcaggattctattttagaagaaacagtt
gtaacattaaaatctttacttatggaaaacaacaaatggcatgatcagac
tctaagataaatgaacaatacctgatttcataatgtatgacagttcaaat
ttgaatggggttgtagaagaaaggccattgatttgttgagttaattttat
atccagctactgcactgaagctgtttatcaagcttaggagttcctctggt
gaaatttttagggtcaacttaatatatactatcatcatctgcaaatagcg
atattttgaactttcttccttcgttgtatccctctgatctcctttattgt
cgattgctctgggtagacttaagtacctatatcaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21300091_21301144
seq2: B6Ng01-278L10.b_47_1099

seq1  GAATTCTTGGGTTGGACCATTTTTCAACTTTTGGGTGCTATAGTCACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTTGGACCATTTTTCAACTTTTGGGTGCTATAGTCACATT  50

seq1  TTCTGAGACCCAGAAAGGAGTTGGAATAGGGTAACACCTCTTTACTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACCCAGAAAGGAGTTGGAATAGGGTAACACCTCTTTACTCTTG  100

seq1  TGTCAGTGTTCTCTGTCTTCTTGCTTTTAAAAGTAGAATTGTAGAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGTTCTCTGTCTTCTTGCTTTTAAAAGTAGAATTGTAGAGATGC  150

seq1  AATTTCTTATTTCATATTGGGTTCTACATGTTATTAGAAATCAAATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTATTTCATATTGGGTTCTACATGTTATTAGAAATCAAATCAGT  200

seq1  TTTTTTTTTTAACCAACGTTTAACTCAAAATGCCAATAATAACTTCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAACCAACGTTTAACTCAAAATGCCAATAATAACTTCCCAC  250

seq1  TCTACTTCTAACAGTGTTTCCTGGTCCTTACAGCCAGTGGTCTACATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCTAACAGTGTTTCCTGGTCCTTACAGCCAGTGGTCTACATGAA  300

seq1  AGCAAAATTACTCCTAGGTTAGAACCAGTTGGCTACAACAATTAGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTACTCCTAGGTTAGAACCAGTTGGCTACAACAATTAGCACTT  350

seq1  CAGACAGTCTATCTGCCACAAGACCCCATTTATAGGAGACAGGCTTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCTATCTGCCACAAGACCCCATTTATAGGAGACAGGCTTCCAC  400

seq1  AGTGCAACTATGTGAGGAACATCTAAGAATTCAGATTCTGTAGTTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACTATGTGAGGAACATCTAAGAATTCAGATTCTGTAGTTTTCTG  450

seq1  CAGACATAAGTCACCATGAAAGGGCTTGTTTTTAATGAACTTCATGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAAGTCACCATGAAAGGGCTTGTTTTTAATGAACTTCATGATAG  500

seq1  ATTCAGTACCTCTTGCCTTCCATGGGTAAAACCTCCCTGATCGAATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTACCTCTTGCCTTCCATGGGTAAAACCTCCCTGATCGAATACTC  550

seq1  TGCTTGTTATATTTTCCCTACTGGCTTCTGGGAGCTCATAGTTTTATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTATATTTTCCCTACTGGCTTCTGGGAGCTCATAGTTTTATGGT  600

seq1  CCCAGCCTGGTGAATAGCCACGGTGGTCTTACTCTGTCCCATTCTGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTGGTGAATAGCCACGGTGGTCTTACTCTGTCCCATTCTGATTG  650

seq1  CCACAATTCTTACAGCCTATTAATTTTTAAAAAAAAATAGTAATTTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTCTTACAGCCTATTAATTTTTAAAAAAAAATAGTAATTTGCCC  700

seq1  TCATTCTCATTTTCACACACAAGTCCACTTACAACCCCCTTCATCAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCATTTTCACACACAAGTCCACTTACAACCCCCTTCATCAACAA  750

seq1  CCACCGAGTAATATTCCTGAATAATAGTCTATTTACATGGAACAGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGAGTAATATTCCTGAATAATAGTCTATTTACATGGAACAGAAAAC  800

seq1  ATGTTGAGAGAGCATAAGTAGAAAACAAGTACAAAACAAAAAATAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAGAGAGCATAAGTAGAAAACAAGTACAAAACAAAAAATAAATAA  850

seq1  TTGAGTAGATATAAATTATTTCAGAAAACCAAGGTTTGCAGAATAGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGATATAAATTATTTCAGAAAACCAAGGTTTGCAGAATAGACTA  900

seq1  GGAGTT-ACATACAAGCACTGGAAAGGATCAGAGAGTGATGTATGCCCTT  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAACATACAAGCACTGGAAAGGATCAGAGAGTGATGTATGCCCTT  950

seq1  CTACATTTTCATGGTTTTCACCTGCA-GACAACTTTTCGTTTATAGAAAG  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTACATTTTCATGGTTTTCACCTGCAGGACAACTTTTCGTTTATAGAAAG  1000

seq1  TTTGTAGGGAAACATGGATGAGCAAAAGCCTCCAGAGGTTTACACAATTT  1048
      ||||||||||||||||||||||| |||||||||||| |||||||| ||||
seq2  TTTGTAGGGAAACATGGATGAGC-AAAGCCTCCAGA-GTTTACAC-ATTT  1047

seq1  CCTTGA  1054
      | ||||
seq2  CTTTGA  1053


seq1: chr6_21497481_21498621
seq2: B6Ng01-278L10.g_65_1202 (reverse)

seq1  CTATTCAATATA-GTACTTAAAGTCCTAACCAGAGCAATTCGACAATAAA  49
      |||||  ||||| |||||| |||| ||| ||||||||| |||||||| ||
seq2  CTATT-GATATAGGTACTT-AAGT-CTACCCAGAGCAA-TCGACAAT-AA  45

seq1  AGGAGATCAAGAGGATACAAATTGGAAAGGAAGAA--GTCAAAATATCGC  97
      |||||||||   ||||||||      |||||||||   ||||||||||||
seq2  AGGAGATCAGAGGGATACAA----CGAAGGAAGAAAGTTCAAAATATCGC  91

seq1  TATTTGCAGATGATGATAGTATATA-TAAG-TGACCCTAAAAATTCCACC  145
      ||||||||||||||||||||||||| |||| |||||||||||||| ||||
seq2  TATTTGCAGATGATGATAGTATATATTAAGTTGACCCTAAAAATTTCACC  141

seq1  AGA-GAACTCCTAAGCCTGATAAACAGCTTCAGTGCAGTAGCTGGATATA  194
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGGAACTCCTAAGCTTGATAAACAGCTTCAGTGCAGTAGCTGGATATA  191

seq1  AAATTAACTCAAACAAATCAATGGCCTTTC-TCTACAACCCCATTTCAAT  243
      |||||||||| ||||||||||||||||||| ||||||||||||||  |||
seq2  AAATTAACTC-AACAAATCAATGGCCTTTCTTCTACAACCCCATTCAAAT  240

seq1  TTGAACTGTCATACATTATGAAATCAGGTATTGTTCATTTATCTTAGAGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTCATACATTATGAAATCAGGTATTGTTCATTTATCTTAGAGT  290

seq1  CTGATCATGCCATTTGTTGTTTTCCATAAGTAAAGATTTTAATGTTACAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATGCCATTTGTTGTTTTCCATAAGTAAAGATTTTAATGTTACAA  340

seq1  CTGTTTCTTCTAAAATAGAATCCTGACATATGTGTTAGAGGAACGCACAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTCTAAAATAGAATCCTGACATATGTGTTAGAGGAACGCACAG  390

seq1  TACAATTTTCCTAGTCATCAAAGAAAAATCATATCATTCTCATTTAAAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTTCCTAGTCATCAAAGAAAAATCATATCATTCTCATTTAAAGA  440

seq1  AAAAGTCATACTTAAAATTGAAAATGCAGCATAGACACATATATATTAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCATACTTAAAATTGAAAATGCAGCATAGACACATATATATTAAA  490

seq1  GGAAGAACGAAAAGAGGCTCTCTGATGACTGTGTGAACTCAATCAAGGGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACGAAAAGAGGCTCTCTGATGACTGTGTGAACTCAATCAAGGGC  540

seq1  CAGGTTTAAAATGCTGAGAAATGTAATCAACTGATTCTTCCCAGGGCTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTAAAATGCTGAGAAATGTAATCAACTGATTCTTCCCAGGGCTTA  590

seq1  GAAGAGTGCATCCGCTAAGTACTAGCCTACTGAGGCAGTATGGGTTTTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGCATCCGCTAAGTACTAGCCTACTGAGGCAGTATGGGTTTTCC  640

seq1  TTCTCATGAGATCCTGCCTTCTGTATGCCCCTTTAAAGGTTGCACCACTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGAGATCCTGCCTTCTGTATGCCCCTTTAAAGGTTGCACCACTG  690

seq1  TTCTCTCGGTTGCCGTCCAGATGAGCTATCATTCTGCACTCTTCCTTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCGGTTGCCGTCCAGATGAGCTATCATTCTGCACTCTTCCTTTCT  740

seq1  GCTGCATCCCATCAGTCATAGAGTCCTTCAGTTCCACTCCTCCGCTGTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCCCATCAGTCATAGAGTCCTTCAGTTCCACTCCTCCGCTGTGC  790

seq1  TTTACATCTCTCTGTCTTCCAGATTGAAATCATCATCATTTTTAAGCCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCTCTCTGTCTTCCAGATTGAAATCATCATCATTTTTAAGCCCA  840

seq1  TCAACTTGACAGATTCCCCTCTAATCAGCTACCTCACTATCTATTTTCTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGACAGATTCCCCTCTAATCAGCTACCTCACTATCTATTTTCTA  890

seq1  CCCCTTGGAAGCATTCTACAATGTAAATGTAATCTTTGCAGTATCTTGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGAAGCATTCTACAATGTAAATGTAATCTTTGCAGTATCTTGGT  940

seq1  ATCAAACAGATTCCAGTTCAAAATCCTCCAAATGGGATTTTAAAAAACCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGATTCCAGTTCAAAATCCTCCAAATGGGATTTTAAAAAACCC  990

seq1  TCAAAAATATGATCATGCAGATTATTCACCTCCAAAACCATCAATATTCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATATGATCATGCAGATTATTCACCTCCAAAACCATCAATATTCA  1040

seq1  AACAACAGAAAGAGACCCAGCAGATTGTTTTTATATACTATACATATATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAAAGAGACCCAGCAGATTGTTTTTATATACTATACATATATA  1090

seq1  TGTAACAACTGTAAAGCAAAGAGGCTATCACCTTGAGAATGAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAACTGTAAAGCAAAGAGGCTATCACCTTGAGAATGAGAATTC  1138


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