BAC Information

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BAC

Clone NameB6Ng01-279B13
Chromosome6 (Build37)
Map Location 126,010,435 - 126,011,564
singlet/doubletsinglet
Overlap genenone
Upstream geneAcrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279B13.bB6Ng01-279B13.g
ACCGA079166GA079167
length1,1781,139
definitionB6Ng01-279B13.b B6Ng01-279B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgaaaatgaaggtacaacatgtccaaccttatagggcaatga
aagtagtgctaagaccatttaaagcactaagtgccttcataaaatattat
tgagatctcatactagtgacttaataccactcctgaaagctctagaaata
aaacagaacaaaacacacccaagaggaatagatggcaggaaataattaat
ctcaggcttgaaatcaataaaatagaaacaaagagaacaatataaagaat
caatgatatagagttgggtgtttttttaagaaaatcaacaagaaagacaa
actgactaaaaaatagagagaggatataaaaattagcaaaatcagaaatg
aaaaggggacataacagatgctgaggaaatccaaatacacaccaggtctt
actttgaaaacctaaataccacaagattggaacccttaaggaaatggaag
cacacattaaaagtattccaaccaaaggagaaaacacaaaaaaacaaaaa
caaaaaacaaaaaacaaaaaacaaaaacaaaaacaaaaaaattccctcag
ggctagatgactttagtgaaaaattctaccagaccttcaaagaagagcta
ttatcaatattacttaaattattgcacaaaacaaaaccagaagaaacatt
gccaaattcattttatgagtccagggtccccctgatacctaaactacaca
aatcctcaacaagaaaaagaatttcagaccaatgttagtgtaaatttata
agtattcctcttaaccagtctagctctcaaataactgagacaggactatt
acatttatttaaactttaaggcataacaacggagaagtactagtctcttt
gaatcctctaaaataatctggctacttcccatctaaacttcctgagatgc
ttgtattttagtagtgatctggccttctctgctccaggtgttttctcgtg
gtgtctcctggaccctctcctagtggtagaagccccatttcctctctctt
tcttctctgtctcctctttccctgggaatggaggaaatttcagctctatt
cttttcctctgcctcagttcattgattgatcagcttttttgttggaccat
acgtaaatatttggggagccatgtttacaaacatgacccagcgattcttt
agggatataggaatttggccacacccga
gaattccaaaagaaaatgggctttatcttccctctcttctgcatctccag
tgttcacatctaataaagcgcccttcacttcgttggatgcacaaataact
tagctctctcctgcagctaagtagttgtacaattaatcagctttctctgg
actagttctcagaataaagaacttacagagagtcttgctgtttcgaagag
atgatgtacttctaattttggaaactggcatccaaattcttaggacttta
ctagactgagatctactttctgtgacgtacttagccacatatgttctctg
tgtcctgatttttaaggtaaggtatcatcgatcccagggttgtggtgaca
gtatatgtagagtgcttcatcccatgcccagtatacataaggtgtgtaat
atatgctggtttccttcaaacagctccttttattcttcagggatattgtg
gtcctcacatggacatggcttcaaggactcaagagaaggcaggatctgta
ggctcaggcagtgattggagagagctaggacaggggttgatagcaatata
gaagctagcatgctcccagggttgtagagtcagagggtactgagcaggac
ttatctgttcctctaggccatctgtgatgctctggaggacatgagtatta
gcccagttcatgtgtatccaaagcctggtcagcttccctggtatattatc
tgagagcaataaggtgaataacagcttgtatcctgtgccttttagtctaa
actgatatggcatgacagaactctatgaggatgttgtctctctctctcat
tcaggtatatcattcctttttatgtaaacgtgtatgtgtttatttgtaca
tgtgtgggaatatgcatatggcttagttttgagacagtgtcccacaaatg
cacaaatgaatgtggaacacaccaatttggtgcctgttccagcacagggt
tttcctgtcttttgtcttccaatgctgggggcttacagatgtgtgtagcc
aaacttggcttctttacatgtgtttggggattgtgaactttaggacttat
ggtttggcttcagcaaggtgcttacccactggagccaattttccttggaa
cattaaacatgactcattctgaattgaatgctttcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126010435_126011564
seq2: B6Ng01-279B13.g_64_1202

seq1  GAATTCCAAAAGAAAATGGGCTTTATCTTCCCTCTCTTCTGCATCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGAAAATGGGCTTTATCTTCCCTCTCTTCTGCATCTCCAG  50

seq1  TGTTCACATCTAATAAAGCGCCCTTCACTTCGTTGGATGCACAAATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACATCTAATAAAGCGCCCTTCACTTCGTTGGATGCACAAATAACT  100

seq1  TAGCTCTCTCCTGCAGCTAAGTAGTTGTACAATTAATCAGCTTTCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCTCCTGCAGCTAAGTAGTTGTACAATTAATCAGCTTTCTCTGG  150

seq1  ACTAGTTCTCAGAATAAAGAACTTACAGAGAGTCTTGCTGTTTCGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCTCAGAATAAAGAACTTACAGAGAGTCTTGCTGTTTCGAAGAG  200

seq1  ATGATGTACTTCTAATTTTGGAAACTGGCATCCAAATTCTTAGGACTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTACTTCTAATTTTGGAAACTGGCATCCAAATTCTTAGGACTTTA  250

seq1  CTAGACTGAGATCTACTTTCTGTGACGTACTTAGCCACATATGTTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGAGATCTACTTTCTGTGACGTACTTAGCCACATATGTTCTCTG  300

seq1  TGTCCTGATTTTTAAGGTAAGGTATCATCGATCCCAGGGTTGTGGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGATTTTTAAGGTAAGGTATCATCGATCCCAGGGTTGTGGTGACA  350

seq1  GTATATGTAGAGTGCTTCATCCCATGCCCAGTATACATAAGGTGTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTAGAGTGCTTCATCCCATGCCCAGTATACATAAGGTGTGTAAT  400

seq1  ATATGCTGGTTTCCTTCAAACAGCTCCTTTTATTCTTCAGGGATATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGGTTTCCTTCAAACAGCTCCTTTTATTCTTCAGGGATATTGTG  450

seq1  GTCCTCACATGGACATGGCTTCAAGGACTCAAGAGAAGGCAGGATCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACATGGACATGGCTTCAAGGACTCAAGAGAAGGCAGGATCTGTA  500

seq1  GGCTCAGGCAGTGATTGGAGAGAGCTAGGACAGGGGTTGATAGCAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGCAGTGATTGGAGAGAGCTAGGACAGGGGTTGATAGCAATATA  550

seq1  GAAGCTAGCATGCTCCCAGGGTTGTAGAGTCAGAGGGTACTGAGCAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGCATGCTCCCAGGGTTGTAGAGTCAGAGGGTACTGAGCAGGAC  600

seq1  TTATCTGTTCCTCTAGGCCATCTGTGATGCTCTGGAGGACATGAGTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTCCTCTAGGCCATCTGTGATGCTCTGGAGGACATGAGTATTA  650

seq1  GCCCAGTTCATGTGTATCCAAAGCCTGGTCAGCTTCCCTGGTATATTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTCATGTGTATCCAAAGCCTGGTCAGCTTCCCTGGTATATTATC  700

seq1  TGAGAGCAATAAGGTGAATAACAGCTTGTATCCTGTGCCTTTTAGTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAATAAGGTGAATAACAGCTTGTATCCTGTGCCTTTTAGTCTAA  750

seq1  ACTGATATGGCATGACAGAACTCTATGAGGATGTTGTCTCTCTCTCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATGGCATGACAGAACTCTATGAGGATGTTGTCTCTCTCTCTCAT  800

seq1  TCAGGTATATCATTCCTTTTTATGTAAACGTGTATGTGTTTATTTGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATATCATTCCTTTTTATGTAAACGTGTATGTGTTTATTTGTACA  850

seq1  TGTGTGGGAATATGCATATGGCTTAGGTTTTGAGACAGTGTCCCACAAAT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTGTGGGAATATGCATATGGCTTA-GTTTTGAGACAGTGTCCCACAAAT  899

seq1  GCACAAATGAATGTGGAACACACCAA-TTGGTGCCTG-TCCAGCACAGGG  948
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  GCACAAATGAATGTGGAACACACCAATTTGGTGCCTGTTCCAGCACAGGG  949

seq1  -TTTCCTGTC-TTTGTCTTCCAATGCTGGGG--CTACAGATGTGTGTAGC  994
       ||||||||| ||||||||||||||||||||   ||||||||||||||||
seq2  TTTTCCTGTCTTTTGTCTTCCAATGCTGGGGGCTTACAGATGTGTGTAGC  999

seq1  CAAACTTGGC-TCTTTACATTGGTGTTTGGG--ATGTGAAC-TTAGGACC  1040
      |||||||||| |||||||||  |||||||||   ||||||| |||||| |
seq2  CAAACTTGGCTTCTTTACAT--GTGTTTGGGGATTGTGAACTTTAGGA-C  1046

seq1  TTAT-GTTTG--CTCAGCAA-GTGCTTTACCCACT-GAGCCA--TTTCCC  1083
      |||| |||||   ||||||| |||| ||||||||| ||||||  ||||| 
seq2  TTATGGTTTGGCTTCAGCAAGGTGC-TTACCCACTGGAGCCAATTTTCCT  1095

seq1  TGGACATTTAAACCTTGAACTGTAATCCAGAA-TGAATGCTTTCTTAT  1130
      ||||   ||||| | |||    | || | ||| |||||||||||||||
seq2  TGGAACATTAAA-CATGA---CTCATTCTGAATTGAATGCTTTCTTAT  1139