BAC Information

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BAC

Clone NameB6Ng01-279I17
Chromosome6 (Build37)15 (Build37)
Map Location 132,900,250 - 132,901,42490,910,511 - 90,911,026
singlet/doubletsingletsinglet
Overlap geneTas2r129
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1
Downstream geneTas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I17.bB6Ng01-279I17.g
ACCGA079499GA079500
length1,1661,133
definitionB6Ng01-279I17.b B6Ng01-279I17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,900,250 - 132,901,424)(90,910,511 - 90,911,026)
sequence
gaattcttgttgaatacatgaactcatttctgctcagttctgtttcataa
acacaacagaaatgttagtaccattcaacatggatggttaaaaaagttct
aagtttgcttaattttactttaattctgagcatttatatggtaaagcatt
ttagaaagtgtcagaacaactgaaacaggactgatcatggatgcataata
aaagctaagattgtttgtaaacgtttgaatgtggaaaaaaaagattgtga
tttgagtaaatgtatattttatgggtgtttgtgcctcaaatgtaaataat
atacaagtacagttatctcctcagtgcggaggtttagatgaattgtaatg
tctggggcattatcagacaaatccaaatgtctgctttaagagcttctgca
acacactagctctgtcatcccttatactcagaaagctcctgatacaagtc
taggttctgattgcccactatatgttagaacatatgaagctacttgccca
taactacagtagtcagatgaaaatgttgtggcagaatcatggaagcaata
aaaataataggtatttattttcatctttgaacatgaagacttagtatttc
ctttagtattcactcaaatattctccacaccacttggtctacagtgtgta
tattgggtagagttggttgaactgaaaagggggaaaaaagtcgctctcac
agaaaaagagatatgttgtgagcttaatattgtcaaagcttgatatttcc
tatttgttactgcacagagttttttttaaaaattgagtttgttatgtgga
ttcaatactcagatagagctctttaatttttttacagtgacctcatgaat
cataacttgccttacagacaatggatggaatcgtacagaacatgtttaca
ttcattgtaattgtggaaataatataggatggattggaaatggattcata
gctctggtgaactgcatacactggtacagagaaggaagatctctgcactg
atcaaatactcacagcctgcctttctccagatctaccttctttaccagat
tcactggttatagcaggtgtctacgcctatccaccccacgtgtgctacta
gaggagtgctgacctggattattcacattgcctttcagcaatcatagcat
gtgggctgactgcatg
gaattctctcctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaacctctctggaaatcagtctggcggtttctta
gaaaattggacatagtactactggaggatcccccaatacctctcctgggc
atatatcaagaagatgttccaaccggtatgaaggacacatgctccactat
cttcatagcagccttatttataatagccataacctgtaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
aaaaactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgaatgaggtaacccagtcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaact
taggatacccaagatataagatacaatttgctaaacgcatgaaactctag
aagaataaagaccacagtgtcgacactgtcccccttcttagaattgggaa
caaaacacctatggaaggagttatagagacaaagtttggagctgtgacaa
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatagagctgtctcttgtgagactatgacgggccctagcaaca
cagaagtggatgctcacaatcagctattggatggatcacagggctcccaa
tggagagctagagaaagtactcaagagctaaagggatctgcacctatagt
gaataacagtctgaactaaccagtactcggagctctgactctagctgcat
atgtatcaaagatgctagtcaggcatctctggaaggaagtcctttgtaca
cacaactaatgccatgcattaaaaaaaatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_132900250_132901424
seq2: B6Ng01-279I17.b_44_1209

seq1  GAATTCTTGTTGAATACATGAACTCATTTCTGCTCAGTTCTGTTTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGAATACATGAACTCATTTCTGCTCAGTTCTGTTTCATAA  50

seq1  ACACAACAGAAATGTTAGTACCATTCAACATGGATGGTTAAAAAAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACAGAAATGTTAGTACCATTCAACATGGATGGTTAAAAAAGTTCT  100

seq1  AAGTTTGCTTAATTTTACTTTAATTCTGAGCATTTATATGGTAAAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCTTAATTTTACTTTAATTCTGAGCATTTATATGGTAAAGCATT  150

seq1  TTAGAAAGTGTCAGAACAACTGAAACAGGACTGATCATGGATGCATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGTGTCAGAACAACTGAAACAGGACTGATCATGGATGCATAATA  200

seq1  AAAGCTAAGATTGTTTGTAAACGTTTGAATGTGGAAAAAAAAGATTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGATTGTTTGTAAACGTTTGAATGTGGAAAAAAAAGATTGTGA  250

seq1  TTTGAGTAAATGTATATTTTATGGGTGTTTGTGCCTCAAATGTAAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAATGTATATTTTATGGGTGTTTGTGCCTCAAATGTAAATAAT  300

seq1  ATACAAGTACAGTTATCTCCTCAGTGCGGAGGTTTAGATGAATTGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTACAGTTATCTCCTCAGTGCGGAGGTTTAGATGAATTGTAATG  350

seq1  TCTGGGGCATTATCAGACAAATCCAAATGTCTGCTTTAAGAGCTTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCATTATCAGACAAATCCAAATGTCTGCTTTAAGAGCTTCTGCA  400

seq1  ACACACTAGCTCTGTCATCCCTTATACTCAGAAAGCTCCTGATACAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAGCTCTGTCATCCCTTATACTCAGAAAGCTCCTGATACAAGTC  450

seq1  TAGGTTCTGATTGCCCACTATATGTTAGAACATATGAAGCTACTTGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTGATTGCCCACTATATGTTAGAACATATGAAGCTACTTGCCCA  500

seq1  TAACTACAGTAGTCAGATGAAAATGTTGTGGCAGAATCATGGAAGCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAGTAGTCAGATGAAAATGTTGTGGCAGAATCATGGAAGCAATA  550

seq1  AAAATAATAGGTATTTATTTTCATCTTTGAACATGAAGACTTAGTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAGGTATTTATTTTCATCTTTGAACATGAAGACTTAGTATTTC  600

seq1  CTTTAGTATTCACTCAAATATTCTCCACACCACTTGGTCTACAGTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTATTCACTCAAATATTCTCCACACCACTTGGTCTACAGTGTGTA  650

seq1  TATTGGGTAGAGTTGGTTGAACTGAAAAGGGGGAAAAAAGTCGCTCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGTAGAGTTGGTTGAACTGAAAAGGGGGAAAAAAGTCGCTCTCAC  700

seq1  AGAAAAAGAGATATGTTGTGAGCTTAATATTGTCAAAGCTTGATATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAGATATGTTGTGAGCTTAATATTGTCAAAGCTTGATATTTCC  750

seq1  TATTTGTTACTGCACAGAGTTTTTTTTAAAAATTGAGTTTGTTATGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTACTGCACAGAGTTTTTTTTAAAAATTGAGTTTGTTATGTGGA  800

seq1  TTCAATACTCAGATAGAGCTCTTTAATTTTTTTACAGTGACCTCATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACTCAGATAGAGCTCTTTAATTTTTTTACAGTGACCTCATGAAT  850

seq1  CATAACTTGCCTTACAGACAATGGATGGAATCGTACAGAACATGTTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTGCCTTACAGACAATGGATGGAATCGTACAGAACATGTTTACA  900

seq1  TTCATTGTAATTGTGGAAATAATAATAGGATGGATTGGAAATGGATTCAT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCATTGTAATTGTGGAAATAAT-ATAGGATGGATTGGAAATGGATTCAT  949

seq1  AGCTCTGGTGAACTGCATACACTGGTACAAGAGAAGAAAGATCTCTGCAC  1000
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AGCTCTGGTGAACTGCATACACTGGTAC-AGAGAAGGAAGATCTCTGCAC  998

seq1  TGAATCAAATACTCACAGCCTTGGCTTTCTCCAGAATCTACCTTCTTTTA  1050
      || ||||||||||||||||| || |||||||||| |||||||||| ||||
seq2  TG-ATCAAATACTCACAGCC-TGCCTTTCTCCAG-ATCTACCTTC-TTTA  1044

seq1  ACAGTATTCACT-GTTATAGCA-GTGTCTACG-CTATACA-CACACGTGT  1096
       ||| ||||||| ||||||||| ||||||||| |||| || | |||||||
seq2  CCAG-ATTCACTGGTTATAGCAGGTGTCTACGCCTATCCACCCCACGTGT  1093

seq1  TGGTAACTAGAAGAGTGGTAAAACTGATTAATTTCCATTTGCTTTTCAGC  1146
        |  |||||| ||||| | |    |||||  |||   |||| |||||||
seq2  --GCTACTAGAGGAGTGCTGACCTGGATTA--TTCACATTGCCTTTCAGC  1139

seq1  AATCATTTTAGCATGT-GGCTTGCTGCATG  1175
      |||||   |||||||| ||||  |||||||
seq2  AATCA---TAGCATGTGGGCTGACTGCATG  1166

seq1: chr15_90910511_90911026
seq2: B6Ng01-279I17.g_1077_1197 (reverse)

seq1  ATGCATTTTTTTTAATCCAAATGAATGAAGTTTATTCTTCCTCTTCAATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCACCCTGTGCTCTGCCCATTAAACGTCTACCCAACCTTTTTTTTTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTTTTTTCTTCATTATCATTTTAATGAATATATAACTTAGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATACAGATGTACTATATCCATACTTCTTTTTTCATAAGAACAGAATATTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAACTTACCACTTTATAATATAAACAGTTCATGAGTTCACATTATTTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATATTATTTTGTTTTTGTTTTTGTTTTTTTTTAAATTAGGTATTTAGCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCC  350
                                                        
seq2  --------------------------------------------------  0

seq1  CACGCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTA  400
                                         ||   ||    |   
seq2  ----------------------------------ATGCATTTTTTTTAAT  16

seq1  CCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATG  450
       |  ||||     ||| || |||| ||| || |   || |||||| ||||
seq2  GCATGGCA---TTAGT-TGTGTGTACAAAGGAC--TTCCTTCCAGAGATG  60

seq1  GCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAG  500
       | ||||||  |||| |||||||||||||||||||||||| |||||||  
seq2  CCTGACTAG--CATC-TTTGATACATATGCAGCTAGAGTC-AGAGCTC-C  105

seq1  GGGTACTGGTTAGTTC  516
      | ||||||||||||||
seq2  GAGTACTGGTTAGTTC  121