BAC Information

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BAC

Clone NameB6Ng01-279L02
Chromosome6 (Build37)
Map Location 26,319,855 - 26,421,056
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr37, Pot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279L02.bB6Ng01-279L02.g
ACCGA079611GA079612
length9671,157
definitionB6Ng01-279L02.b B6Ng01-279L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,420,525 - 26,421,056)(26,319,855 - 26,321,038)
sequence
gaattccagggaggcttccagtctgttgtatcagtttccctacatgccat
agattcctcagcaggtcttcacactctagtgtctgatgtccagttgccca
gtatacagaggagctcttgggatgccttcaacctgtggtgtcttcagggg
agcatagaagctgactatcagttgctcggttgccttgtgtgtagcagatc
tccttggatgtctcaggcttcagtatcagttgccctgtgggcagcagatt
tcctggtatgcctctgtctgtggtgtcagttactctgagtgcagtggatc
ttctgggctggttcagggcatggtgtctccaggggagcagactacttagc
agtctgccctagcagaaaggaccaggcaaaagggaagggattgggtggta
atatgtccactggactcatagaggcagttgtgggatttctggagtgttct
taccaaatgctctgaatgcagcagatcttctgggctgggtcaggatatcg
tgctgccagggaagcagactaaccagcagtctgccccagtagaacattta
caatggatattgtacatttattgactgtaggtatcacactaaagaatttt
aataatatactttgcattgcagttccaaatataagaaaaaaatagatgta
gttcatagttgtatactaattaaagttccttattctcttcaagggcaata
agatcaatttttccaagatgaacctactcaacaatgatcactacaacatt
attaaggaccaccagtataatcagctagtacctctcaaagaataaaaaga
aaagatcaatattatattcacacattataataacattcacttgagacaag
caaattttgccttgagtatcttaatcgggcaaatatattacttattctca
gttaattcttttagtttttaaacttttcttgtgtatgtgagcctggatac
aagtgtgtgtgtgtgtg

gaattcaaatgaaacatatatgttcatgatggaaaggcaagaagtgattg
aacatcaaaagatgcaataagattaataaggacagggttcttttcagtac
ctgattataattcagcaaactgtctaaaataacccacagggagggtatta
taatctgttttactcattcatctttagcatgtttattctttagcttccaa
aaaatgatactttctcttcttattactcaaagactcaatggtcaaagctg
caaagttaactctttgtgctgtcattgataatttaactttcaaaacaata
tttttagtatctttcacgttgaaatagatgttctcttagacatgcaaact
gttccctgaagtataacttgctgtgcaacttcatttgagacacttgattg
tctgtgatctatagtgagaaatatttttacaaaggttaaaaacctatgat
aggtcttcagatgttggatttcaccagtggctatgtgttgacaagtggtt
cttgaaggaaaagataaaaattaatgcaacaaagcagagttcttcctttc
tttaaaacactttcccatctgtgaagcctgcaatggaccatacaccagtg
taatttatcatcctaacttattgtcatttttaacactggagctttagaaa
tattgtgtttccgatatgccttgcaaactaggtcagattgccacaacact
gtcttggtgtaataatatgaagcatcatcacacactctaacatcataatg
tgttctttatcagagaacacagaagacatttctccttccaataactttac
attactgttcaaaatcaatatcattccatgccttgactctacagcatccc
acaggagttcaaatcacatatgtcatatatatgctgtttagttttatgct
actttttctcttgtcccttatatttttcctggtgtttcagatgggtttaa
ttaacagatctctgttatatgagtatgccattttccggattataccacct
aagtgtaaagcaaagaaatttcttgcagatgagaatattgtacaaataaa
tgttgttgatatgctggatgatcagaaaaatttttgatgttttctgcagc
acatagtgatttgtcttgactttagctcattctccactttaagctgagaa
acatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26420525_26421056
seq2: B6Ng01-279L02.b_466_997 (reverse)

seq1  CACACACACACACACTTGTATCCAGGCTCACATACACAAGAAAAGTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTTGTATCCAGGCTCACATACACAAGAAAAGTTTAA  50

seq1  AAACTAAAAGAATTAACTGAGAATAAGTAATATATTTGCCCGATTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAAGAATTAACTGAGAATAAGTAATATATTTGCCCGATTAAGAT  100

seq1  ACTCAAGGCAAAATTTGCTTGTCTCAAGTGAATGTTATTATAATGTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGCAAAATTTGCTTGTCTCAAGTGAATGTTATTATAATGTGTGA  150

seq1  ATATAATATTGATCTTTTCTTTTTATTCTTTGAGAGGTACTAGCTGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATTGATCTTTTCTTTTTATTCTTTGAGAGGTACTAGCTGATTA  200

seq1  TACTGGTGGTCCTTAATAATGTTGTAGTGATCATTGTTGAGTAGGTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGTCCTTAATAATGTTGTAGTGATCATTGTTGAGTAGGTTCAT  250

seq1  CTTGGAAAAATTGATCTTATTGCCCTTGAAGAGAATAAGGAACTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAATTGATCTTATTGCCCTTGAAGAGAATAAGGAACTTTAATT  300

seq1  AGTATACAACTATGAACTACATCTATTTTTTTCTTATATTTGGAACTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAACTATGAACTACATCTATTTTTTTCTTATATTTGGAACTGCA  350

seq1  ATGCAAAGTATATTATTAAAATTCTTTAGTGTGATACCTACAGTCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGTATATTATTAAAATTCTTTAGTGTGATACCTACAGTCAATAA  400

seq1  ATGTACAATATCCATTGTAAATGTTCTACTGGGGCAGACTGCTGGTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAATATCCATTGTAAATGTTCTACTGGGGCAGACTGCTGGTTAGT  450

seq1  CTGCTTCCCTGGCAGCACGATATCCTGACCCAGCCCAGAAGATCTGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTGGCAGCACGATATCCTGACCCAGCCCAGAAGATCTGCTGC  500

seq1  ATTCAGAGCATTTGGTAAGAACACTCCAGAAA  532
      ||||||||||||||||||||||||||||||||
seq2  ATTCAGAGCATTTGGTAAGAACACTCCAGAAA  532


seq1: chr6_26319855_26321038
seq2: B6Ng01-279L02.g_63_1219

seq1  GAATTCAAATGAAACATATATGTTCATGATGGAAAGGCAAGAAGTGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAAACATATATGTTCATGATGGAAAGGCAAGAAGTGATTG  50

seq1  AACATCAAAAGATGCAATAAGATTAATAAGGACAGGGTTCTTTTCAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAAAGATGCAATAAGATTAATAAGGACAGGGTTCTTTTCAGTAC  100

seq1  CTGATTATAATTCAGCAAACTGTCTAAAATAACCCACAGGGAGGGTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATAATTCAGCAAACTGTCTAAAATAACCCACAGGGAGGGTATTA  150

seq1  TAATCTGTTTTACTCATTCATCTTTAGCATGTTTATTCTTTAGCTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTTTTACTCATTCATCTTTAGCATGTTTATTCTTTAGCTTCCAA  200

seq1  AAAATGATACTTTCTCTTCTTATTACTCAAAGACTCAATGGTCAAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATACTTTCTCTTCTTATTACTCAAAGACTCAATGGTCAAAGCTG  250

seq1  CAAAGTTAACTCTTTGTGCTGTCATTGATAATTTAACTTTCAAAACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAACTCTTTGTGCTGTCATTGATAATTTAACTTTCAAAACAATA  300

seq1  TTTTTAGTATCTTTCACGTTGAAATAGATGTTCTCTTAGACATGCAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTATCTTTCACGTTGAAATAGATGTTCTCTTAGACATGCAAACT  350

seq1  GTTCCCTGAAGTATAACTTGCTGTGCAACTTCATTTGAGACACTTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGAAGTATAACTTGCTGTGCAACTTCATTTGAGACACTTGATTG  400

seq1  TCTGTGATCTATAGTGAGAAATATTTTTACAAAGGTTAAAAACCTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCTATAGTGAGAAATATTTTTACAAAGGTTAAAAACCTATGAT  450

seq1  AGGTCTTCAGATGTTGGATTTCACCAGTGGCTATGTGTTGACAAGTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCAGATGTTGGATTTCACCAGTGGCTATGTGTTGACAAGTGGTT  500

seq1  CTTGAAGGAAAAGATAAAAATTAATGCAACAAAGCAGAGTTCTTCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGAAAAGATAAAAATTAATGCAACAAAGCAGAGTTCTTCCTTTC  550

seq1  TTTAAAACACTTTCCCATCTGTGAAGCCTGCAATGGACCATACACCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACACTTTCCCATCTGTGAAGCCTGCAATGGACCATACACCAGTG  600

seq1  TAATTTATCATCCTAACTTATTGTCATTTTTAACACTGGAGCTTTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATCATCCTAACTTATTGTCATTTTTAACACTGGAGCTTTAGAAA  650

seq1  TATTGTGTTTCCGATATGCCTTGCAAACTAGGTCAGATTGCCACAACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTTTCCGATATGCCTTGCAAACTAGGTCAGATTGCCACAACACT  700

seq1  GTCTTGGTGTAATAATATGAAGCATCATCACACACTCTAACATCATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTGTAATAATATGAAGCATCATCACACACTCTAACATCATAATG  750

seq1  TGTTCTTTATCAGAGAACACAGAAGACATTTCTCCTTCCAATAACTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTATCAGAGAACACAGAAGACATTTCTCCTTCCAATAACTTTAC  800

seq1  ATTACTGTTCAAAATCAATATCATTCCATGCCTTGACTCTACAGCATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTTCAAAATCAATATCATTCCATGCCTTGACTCTACAGCATCCC  850

seq1  ACAGGAGTTCAAATCACATATGTCATATATATGCTGTTTAGTTTTATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTTCAAATCACATATGTCATATATATGCTGTTTAGTTTTATGCT  900

seq1  ACTTTTTCTCTTGTCCCTTATATTTTTCCTGGTGTTTCAGATGGTTTTAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTTTTCTCTTGTCCCTTATATTTTTCCTGGTGTTTCAGATGGGTTTAA  950

seq1  TTAACAAGATCTCTGTTATAATGAGTATGCCATTTTCCGGATTATACCAC  1000
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAAC-AGATCTCTGTTAT-ATGAGTATGCCATTTTCCGGATTATACCAC  998

seq1  CTAAGTGTAAAGCAAAGAAATTTCTTGCAGATTGAGAATA-TGTACAAAA  1049
      ||||||||||||||||||||||||||||||| |||||||| |||||||| 
seq2  CTAAGTGTAAAGCAAAGAAATTTCTTGCAGA-TGAGAATATTGTACAAA-  1046

seq1  TTAAATGGTTGTTGATAATGCTGAATGATTCAGAAAAAATTTTTGATGTT  1099
       ||||| ||||||||| |||||| |||| |||| ||||||||||||||||
seq2  -TAAAT-GTTGTTGAT-ATGCTGGATGA-TCAG-AAAAATTTTTGATGTT  1091

seq1  TTCTGGGAAGGCACATAGTGAATTTGTCTTTTGTCTTTTTTGTCTTCTAT  1149
      |||||     |||||||||| |||||||  ||| ||||        ||  
seq2  TTCTG---CAGCACATAGTG-ATTTGTC--TTGACTTT------AGCTCA  1129

seq1  TTCTTCAACTTTAAGCTGAGAACATTATACATATA  1184
      ||| || |||||||||||||||      |||||||
seq2  TTC-TCCACTTTAAGCTGAGAA------ACATATA  1157


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