BAC Information

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BAC

Clone NameB6Ng01-279L24
Chromosome6 (Build37)
Map Location 9,709,837 - 9,710,950
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279L24.bB6Ng01-279L24.g
ACCGA079651GA079652
length4861,102
definitionB6Ng01-279L24.b B6Ng01-279L24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cttcagctctgcctactgtttgcctgtgtctgtctgcatctgttttcatc
agttgctgggtgaagcctctctgatattccgactaggcatcaatctgagt
atagtagagtatcattagcaatccttttctatcctagatgtctaggctat
ccagcctctggtttctggccctcccagcactatcagatataggttccccc
tcatgggatgggtctcaagctgagacctctgcatatatggtacagtttgg
tagtttcgtctccatgagagattcctaacagtaggaacaggggctgtctt
tgactctgctgcctgcctttgggattctttcctcctactaggtaggtttt
cttgtccatacttgatacaaatggagatatctagtcttattgcaatttga
tataccatacttggttgatatccatgggaagcctaccattttctgaagag
aaacagaagagaagtaggtagtgtgggggtggggtg

gaattctttctcatttaactttagaatgagtaaatataattttaaggttt
aaaactttacttatacattctttatattgttaaaaattggaaacaaaaag
gaatatagtatttatttcattgtattattttattaatacaaaatggtaat
gaaaaagttaaatgatgcttattaaacaacaatgagaattaaacatactc
tttaagatggagaaaaaatgagtgaagggtctgtaaacaagtttagttct
ttcattttgcagatttaaagatagactagatacatcaattgctttgaatt
attcagattcattgaatgcacaaaactaccaaaaataggttaaagagtct
aattttagataaacatctttcctaaatgttaaggtttattgaaaataata
gtatctaaaagttagattataaagttaattattggatattaaatgttaaa
tgtattattttacattaaaggagacagtaagataggatgaggacaaactt
ccatcgactgtatttattaagtatggcatatgaacaaaatgaatcaataa
atttaaacttcaataatgttgtgggaatgatttgaaaaggcttttcatta
tgccgctagtcctgaagcaattaattttcaattatacattcagatatgac
tatcccacttactccagaatcacccttaattttccaagaaactgaacaaa
tgggtctcacacactaaacagattggaaacattaccattttgcttgaaaa
tgttaattagaaaatgcagaggatatacaatgacaataaaaaattcattt
ggtactttctcacttatttttcacatgcatcatctaatttctaatcaatg
cattccaaataaatattttacagcatttagcaatcaatcacctgtcatca
ctagagactggcttttacaatagatagaatcagatataactttgctttga
tccaagcaaaatcagtgagttcagcagatatagctatgggattgcatagg
ttgatatccagagtagttcattactagaaattagaaaacactattaaaat
attcgtacaatgatatcacatgaaagtatcttaccttgacctatttaaac
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9709837_9710950
seq2: B6Ng01-279L24.g_63_1164 (reverse)

seq1  TTGTTTAAATAGTTCAAGGGTAGATACTCTCATGTGA-ATAATTCATGTA  49
      |||||||||||| ||||||  ||||||| |||||||| || ||   ||||
seq2  TTGTTTAAATAGGTCAAGGTAAGATACTTTCATGTGATATCAT---TGTA  47

seq1  CGAAATTATTTTTTAATTAGTGTTTTTTTAATTTCTAGTAATGAACCTAC  99
      ||||  ||||||   | ||||| |||| ||||||||||||||||| ||||
seq2  CGAA--TATTTT---AATAGTG-TTTTCTAATTTCTAGTAATGAA-CTAC  90

seq1  TCTGGATATTCAACCCTATGCAAT-CCATAGCTATATCTGCCTGAACTCA  148
      |||||||| |||| |||||||||| ||||||||||||||| |||||||||
seq2  TCTGGATA-TCAA-CCTATGCAATCCCATAGCTATATCTG-CTGAACTCA  137

seq1  CTGATTTTGCTTTGGATCAAAGCAAAGTTATATCTGATTCTATCTATTGT  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTGC-TTGGATCAAAGCAAAGTTATATCTGATTCTATCTATTGT  186

seq1  AAAAGCCAGTCTCTAGTGATGACAGGTGATTGATTGCTAAATGCTGTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGTCTCTAGTGATGACAGGTGATTGATTGCTAAATGCTGTAAA  236

seq1  ATATTTATTTGGAATGCATTGATTAGAAATTAGATGATGCATGTGAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTGGAATGCATTGATTAGAAATTAGATGATGCATGTGAAAAA  286

seq1  TAAGTGAGAAAGTACCAAATGAATTTTTTATTGTCATTGTATATCCTCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGAAAGTACCAAATGAATTTTTTATTGTCATTGTATATCCTCTG  336

seq1  CATTTTCTAATTAACATTTTCAAGCAAAATGGTAATGTTTCCAATCTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTAATTAACATTTTCAAGCAAAATGGTAATGTTTCCAATCTGTT  386

seq1  TAGTGTGTGAGACCCATTTGTTCAGTTTCTTGGAAAATTAAGGGTGATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTGAGACCCATTTGTTCAGTTTCTTGGAAAATTAAGGGTGATTC  436

seq1  TGGAGTAAGTGGGATAGTCATATCTGAATGTATAATTGAAAATTAATTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGTGGGATAGTCATATCTGAATGTATAATTGAAAATTAATTGC  486

seq1  TTCAGGACTAGCGGCATAATGAAAAGCCTTTTCAAATCATTCCCACAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACTAGCGGCATAATGAAAAGCCTTTTCAAATCATTCCCACAACA  536

seq1  TTATTGAAGTTTAAATTTATTGATTCATTTTGTTCATATGCCATACTTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAGTTTAAATTTATTGATTCATTTTGTTCATATGCCATACTTAA  586

seq1  TAAATACAGTCGATGGAAGTTTGTCCTCATCCTATCTTACTGTCTCCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAGTCGATGGAAGTTTGTCCTCATCCTATCTTACTGTCTCCTTT  636

seq1  AATGTAAAATAATACATTTAACATTTAATATCCAATAATTAACTTTATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATAATACATTTAACATTTAATATCCAATAATTAACTTTATAA  686

seq1  TCTAACTTTTAGATACTATTATTTTCAATAAACCTTAACATTTAGGAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTTTAGATACTATTATTTTCAATAAACCTTAACATTTAGGAAAG  736

seq1  ATGTTTATCTAAAATTAGACTCTTTAACCTATTTTTGGTAGTTTTGTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCTAAAATTAGACTCTTTAACCTATTTTTGGTAGTTTTGTGCA  786

seq1  TTCAATGAATCTGAATAATTCAAAGCAATTGATGTATCTAGTCTATCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAATCTGAATAATTCAAAGCAATTGATGTATCTAGTCTATCTTT  836

seq1  AAATCTGCAAAATGAAAGAACTAAACTTGTTTACAGACCCTTCACTCATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCAAAATGAAAGAACTAAACTTGTTTACAGACCCTTCACTCATT  886

seq1  TTTTCTCCATCTTAAAGAGTATGTTTAATTCTCATTGTTGTTTAATAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCATCTTAAAGAGTATGTTTAATTCTCATTGTTGTTTAATAAGC  936

seq1  ATCATTTAACTTTTTCATTACCATTTTGTATTAATAAAATAATACAATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAACTTTTTCATTACCATTTTGTATTAATAAAATAATACAATGA  986

seq1  AATAAATACTATATTCCTTTTTGTTTCCAATTTTTAACAATATAAAGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACTATATTCCTTTTTGTTTCCAATTTTTAACAATATAAAGAAT  1036

seq1  GTATAAGTAAAGTTTTAAACCTTAAAATTATATTTACTCATTCTAAAGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTAAAGTTTTAAACCTTAAAATTATATTTACTCATTCTAAAGTT  1086

seq1  AAATGAGAAAGAATTC  1114
      ||||||||||||||||
seq2  AAATGAGAAAGAATTC  1102


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