BAC Information

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BAC

Clone NameB6Ng01-280A06
Chromosome6 (Build37)
Map Location 8,387,164 - 8,388,132
singlet/doubletsinglet
Overlap genenone
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028
Downstream geneA430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280A06.bB6Ng01-280A06.g
ACCGA079851GA079852
length1,174971
definitionB6Ng01-280A06.b B6Ng01-280A06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatacacctatggtcacttgatctttgacaagggagctaaaacca
tccagtggataaaagacaggtttttcaacaaatgttgctgtcacaactgg
cagttatcatgtagaagaattcgagttgatccattcttatctccttgtac
aaagctgaagtctaagtggatcaaagacctccacataagaccagagacac
tgaaattagtagaggagaaagtagggaaaaacctcaaagatatgggcaca
ggggaaaaattcctaaacagaacagcaatggcttgtgctgtaagatcaag
aattgacaaaagggacctcataaaattgcaaagcttctgtaaggcaaaag
acactgtcaataagacaaaaaggccaccaacagaatgggaaaggattttt
accaatcctaaatctgataggggactaatttccaatatatacaaagagct
caagaagctggactccagaaattcaaataacgccattaaaaaatggggtt
gagagctaaacaaagaattctcaactgaggaatactgaatggctgagaag
cacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaa
aacaaccttgagattccatctcacaccagtcagaatggctaagatcaaaa
attcaggtgacagcagatgctggcgaggatgtggagaaaaaggaacactc
ctccattgttggtgggattgcaagcttgtacaaccggttactctggaaat
cagtctggaggttcctctgaaaattggacataatactactggaagatcca
gcaatacctctcctggacatatacccagaagaagttccaactggtaataa
gaacacattcaccactatgtttatagcagccctatttatatagccagaag
ctggaaagaacccagatgtctctcacagagaatagatacagaaaattgtg
gtacatttacacaatgagtactactcagctaataaaaacatggatttaat
gaattctgaacaatgatgtattgtgagattatcatcctagtgaagttacc
atcacaaagagtcatagaattgcactcactgatattgatctagccagaac
tagaactcgatacattgcaaccaagaaatcagaagtacatgtgaatctat
cctcttgaaatgcacttagttcac
gaattcttttttttttaagtccagattttatttcccttctagtccaccct
cctactgttacatatcccatacctcctccctgcccccctgtctccaggag
gatgtccccactcccaccccaccagacctctaaactccctggggcctcca
gcctcttgaaggttaggtatatcaactctgaatgaatatagacccggcag
tcctctgctatatatgtgttggggcctcacatcagctggtatatgctgcc
tggttggtgttctgagagatcttggggagtccaggttaattgagactgct
ggtcctcctacagggtcctatattgagtgatcatgaccttgtactatatt
agtaaactgatatctaattagtgtggtcattgcattagctctttgtacct
ccaaggtcaccattgtcatatggccttcctttccctagatataagggtgc
acatagactatagcagccaatcttttaaaagcttcatttagtccataaaa
ataagtgaggtgcaggggagccctcttacacttgcttaacaaaactctat
tttctgtaatgtagatagcaagttgcaatcacgttataacatcaataagt
cataataatcttttattagaaatgattttcacaagtattctccatcccta
aactttataagtggtatcttaatctttattttcttcctgtccttgattaa
aatactatgctaaatgaataccagtgtcagctgtttcctaattgaagggc
tgtctcctgaaactctctcttcttccccatcttgagtttatcacctgagt
cactttaaatgctttcaggttccacacttgccgatgttctactagcagag
ggtagctacgaaagcaaagcttgtccttaggcaagttatttttcattgat
gcttttttggggggatggttgtgggctagacaggtgttctctttctgtgg
atgctgataaggccctagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8387164_8388132
seq2: B6Ng01-280A06.g_69_1039

seq1  GAATTCTTTTTTTTTTAAGTCCAGATTTTATTTCCCTTCTAGTCCACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTAAGTCCAGATTTTATTTCCCTTCTAGTCCACCCT  50

seq1  CCTACTGTTACATATCCCATACCTCCTCCCTGCCCCCCTGTCTCCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTTACATATCCCATACCTCCTCCCTGCCCCCCTGTCTCCAGGAG  100

seq1  GATGTCCCCACTCCCACCCCACCAGACCTCTAAACTCCCTGGGGCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCCACTCCCACCCCACCAGACCTCTAAACTCCCTGGGGCCTCCA  150

seq1  GCCTCTTGAAGGTTAGGTATATCAACTCTGAATGAATATAGACCCGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGAAGGTTAGGTATATCAACTCTGAATGAATATAGACCCGGCAG  200

seq1  TCCTCTGCTATATATGTGTTGGGGCCTCACATCAGCTGGTATATGCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTATATATGTGTTGGGGCCTCACATCAGCTGGTATATGCTGCC  250

seq1  TGGTTGGTGTTCTGAGAGATCTTGGGGAGTCCAGGTTAATTGAGACTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTGTTCTGAGAGATCTTGGGGAGTCCAGGTTAATTGAGACTGCT  300

seq1  GGTCCTCCTACAGGGTCCTATATTGAGTGATCATGACCTTGTACTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTACAGGGTCCTATATTGAGTGATCATGACCTTGTACTATATT  350

seq1  AGTAAACTGATATCTAATTAGTGTGGTCATTGCATTAGCTCTTTGTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTGATATCTAATTAGTGTGGTCATTGCATTAGCTCTTTGTACCT  400

seq1  CCAAGGTCACCATTGTCATATGGCCTTCCTTTCCCTAGATATAAGGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCACCATTGTCATATGGCCTTCCTTTCCCTAGATATAAGGGTGC  450

seq1  ACATAGACTATAGCAGCCAATCTTTTAAAAGCTTCATTTAGTCCATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACTATAGCAGCCAATCTTTTAAAAGCTTCATTTAGTCCATAAAA  500

seq1  ATAAGTGAGGTGCAGGGGAGCCCTCTTACACTTGCTTAACAAAACTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAGGTGCAGGGGAGCCCTCTTACACTTGCTTAACAAAACTCTAT  550

seq1  TTTCTGTAATGTAGATAGCAAGTTGCAATCACGTTATAACATCAATAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAATGTAGATAGCAAGTTGCAATCACGTTATAACATCAATAAGT  600

seq1  CATAATAATCTTTTATTAGAAATGATTTTCACAAGTATTCTCCATCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAATCTTTTATTAGAAATGATTTTCACAAGTATTCTCCATCCCTA  650

seq1  AACTTTATAAGTGGTATCTTAATCTTTATTTTCTTCCTGTCCTTGATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATAAGTGGTATCTTAATCTTTATTTTCTTCCTGTCCTTGATTAA  700

seq1  AATACTATGCTAAATGAATACCAGTGTCAGCTGTTTCCTAATTGAAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATGCTAAATGAATACCAGTGTCAGCTGTTTCCTAATTGAAGGGC  750

seq1  TGTCTCCTGAAACTCTCTCTTCTTCCCCATCTTGAGTTTATCACCTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGAAACTCTCTCTTCTTCCCCATCTTGAGTTTATCACCTGAGT  800

seq1  CACTTTAAATGC-TTCAGGTTCCACACTTGCCGATGTTCTACTAGCAGAG  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAATGCTTTCAGGTTCCACACTTGCCGATGTTCTACTAGCAGAG  850

seq1  GGTAGCTACGAAAGCAAAGC-TGTCCTTAGGCAAGTTA-TTTTCATTGAT  897
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  GGTAGCTACGAAAGCAAAGCTTGTCCTTAGGCAAGTTATTTTTCATTGAT  900

seq1  GCTTTTTTGGGGGGATGGTTGTGGGCTAGACAGGTGTTCTCTTTCATGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTTTTTGGGGGGATGGTTGTGGGCTAGACAGGTGTTCTCTTTC-TGTG  949

seq1  GATGCTGATAAAGGCCTAGCTG  969
      ||||||||||| | ||||||||
seq2  GATGCTGATAAGGCCCTAGCTG  971