BAC Information

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BAC

Clone NameB6Ng01-280H05
Chromosome6 (Build37)
Map Location 3,325,576 - 3,326,680
singlet/doubletsinglet
Overlap geneSamd9l
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335
Downstream geneAI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H05.bB6Ng01-280H05.g
ACCGA080172GA080173
length1,0991,193
definitionB6Ng01-280H05.b B6Ng01-280H05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagcctttacaaacacaaagaaagccacagaagaggacataaa
aatgaaatttagcaatgagactttccgatttgcagcagcttgtatgaatt
cacgtaccaatggcactattcattttggagtaaaagacaaaccacacggg
gaaattgttggtgtgcaagtcaccagtaaagatatctttgttaaccattt
caacacaatgatcacgaagtattttgaagacagtgaaatcagtgaagcca
gggcttgtatccgggaaccacggttcgtggaagtccttttgcagaataat
acacaatctaatagatttgtcattgaggtagatgttattcccagacattc
tatatgtcaagaaaagtatttctacattatgatgcaaagtagcacaggca
aaacatggaaacaaagcaaagatacttcattgtttgtaagagaaggagct
agctctaagaatatcctgggcaatcccaaccaacgggatagagagttcaa
gaaatttctagaggatttaaagatgtggacagcgtctagaaaagcggccg
aagaagaacttagaatggtaactaagaaagagagtgaaggactaaaactg
tctaaacttttgaccagacaccaaggctcacttgatgaatcttactatga
ttggtacattcttgtaacaaatacctgtgcaccaactcaattagagcact
tagagttcataaaggaaatgaaattgtttgctgtgctagattttgatcct
tattctcacatcaagggagtggtcaaagcttacagagaaagcagaatagc
aaaccttcacctgcccagtcactatgaggaaaaaactaccatagcagaga
aaatttctactctgaaactttatgagcaacctagctggatcttctgcaat
ggcagagtagacttgtcatgtcaacctctagagccacatttatggcagag
agatagagcttctggggttagaagacttattttcatttcctcacagacga
aaatatcatagttaaaagggaagctttggtggtgttctctacttctccca
tagaaacaaaagatcactcatgagactttttgtgctttctatcaggttt

gaattcagaacttttcagctggggaacgagagtaccagtgagtatagctt
tacgaggtaagcctggccttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctaatgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcagggcaagctatcagaagtaaagcggggagagaga
gtaggaacaaagaggaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttggtagctctgaatcagatgatgaattctcctctgaag
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctggcga
aggccagtttgctgattggcctcagggcagtcggcttcaaggtccgccct
atgcggagcccccgccctgcgtagtgcgtcagccctgcgcagagagacaa
tgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaag
gaaaatacaacaggcatttccagtctttgaaggagccgagggtgggcgtg
tccacgctccggtagaatacttacagattaaagagcttgccgagtcggtc
cgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggct
cgccggcatggcactaactcctgctgactggcaaacggttgtaaaagccg
ctctccctagtatgggcaaatatatggattggagagcttcttttggcatg
aaactgcacagcgcagcccgagcaaacgcagctgctttgacctccatgag
cagagaagattgggactttgacttgtactggttcagtagctattctgctg
atcagcaactaccattgggagcttatgccaagtctccagctataggctgg
aggcgtctctccgagacagggtaaaacccacccatggtcgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3325576_3326680
seq2: B6Ng01-280H05.b_41_1139 (reverse)

seq1  AAACTTGATAGAAAGCACAAAAAGTCTCAATGAGTGGATCTTTTTGGTTT  50
      |||| ||||||||||||||||||||||| |||||| ||||||||    ||
seq2  AAACCTGATAGAAAGCACAAAAAGTCTC-ATGAGT-GATCTTTT---GTT  45

seq1  TCTATGGGAGAAAGTAAGAGGAACACCACCAAAACCTTCCCTTTT-ACTA  99
      |||||||||| |||| ||| |||||||||| ||| |||||||||| ||||
seq2  TCTATGGGAG-AAGT-AGA-GAACACCACC-AAAGCTTCCCTTTTAACTA  91

seq1  TGATATTTTCGTCTGTGAGG-AATG-AAATAAGTCTTCTAACCCCAGAAG  147
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TGATATTTTCGTCTGTGAGGAAATGAAAATAAGTCTTCTAACCCCAGAAG  141

seq1  CTCTATCTCTCTGCCATAAATGTGGCTCTAGAGGTTGACATGACAAGTCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTCTCTGCCATAAATGTGGCTCTAGAGGTTGACATGACAAGTCT  191

seq1  ACTCTGCCATTGCAGAAGATCCAGCTAGGTTGCTCATAAAGTTTCAGAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCATTGCAGAAGATCCAGCTAGGTTGCTCATAAAGTTTCAGAGT  241

seq1  AGAAATTTTCTCTGCTATGGTAGTTTTTTCCTCATAGTGACTGGGCAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTCTCTGCTATGGTAGTTTTTTCCTCATAGTGACTGGGCAGGT  291

seq1  GAAGGTTTGCTATTCTGCTTTCTCTGTAAGCTTTGACCACTCCCTTGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTGCTATTCTGCTTTCTCTGTAAGCTTTGACCACTCCCTTGATG  341

seq1  TGAGAATAAGGATCAAAATCTAGCACAGCAAACAATTTCATTTCCTTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAAGGATCAAAATCTAGCACAGCAAACAATTTCATTTCCTTTAT  391

seq1  GAACTCTAAGTGCTCTAATTGAGTTGGTGCACAGGTATTTGTTACAAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTAAGTGCTCTAATTGAGTTGGTGCACAGGTATTTGTTACAAGAA  441

seq1  TGTACCAATCATAGTAAGATTCATCAAGTGAGCCTTGGTGTCTGGTCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAATCATAGTAAGATTCATCAAGTGAGCCTTGGTGTCTGGTCAAA  491

seq1  AGTTTAGACAGTTTTAGTCCTTCACTCTCTTTCTTAGTTACCATTCTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGACAGTTTTAGTCCTTCACTCTCTTTCTTAGTTACCATTCTAAG  541

seq1  TTCTTCTTCGGCCGCTTTTCTAGACGCTGTCCACATCTTTAAATCCTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCGGCCGCTTTTCTAGACGCTGTCCACATCTTTAAATCCTCTA  591

seq1  GAAATTTCTTGAACTCTCTATCCCGTTGGTTGGGATTGCCCAGGATATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTTGAACTCTCTATCCCGTTGGTTGGGATTGCCCAGGATATTC  641

seq1  TTAGAGCTAGCTCCTTCTCTTACAAACAATGAAGTATCTTTGCTTTGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTAGCTCCTTCTCTTACAAACAATGAAGTATCTTTGCTTTGTTT  691

seq1  CCATGTTTTGCCTGTGCTACTTTGCATCATAATGTAGAAATACTTTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTGCCTGTGCTACTTTGCATCATAATGTAGAAATACTTTTCTT  741

seq1  GACATATAGAATGTCTGGGAATAACATCTACCTCAATGACAAATCTATTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAGAATGTCTGGGAATAACATCTACCTCAATGACAAATCTATTA  791

seq1  GATTGTGTATTATTCTGCAAAAGGACTTCCACGAACCGTGGTTCCCGGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTATTATTCTGCAAAAGGACTTCCACGAACCGTGGTTCCCGGAT  841

seq1  ACAAGCCCTGGCTTCACTGATTTCACTGTCTTCAAAATACTTCGTGATCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCTGGCTTCACTGATTTCACTGTCTTCAAAATACTTCGTGATCA  891

seq1  TTGTGTTGAAATGGTTAACAAAGATATCTTTACTGGTGACTTGCACACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGAAATGGTTAACAAAGATATCTTTACTGGTGACTTGCACACCA  941

seq1  ACAATTTCCCCGTGTGGTTTGTCTTTTACTCCAAAATGAATAGTGCCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCCCCGTGTGGTTTGTCTTTTACTCCAAAATGAATAGTGCCATT  991

seq1  GGTACGTGAATTCATACAAGCTGCTGCAAATCGGAAAGTCTCATTGCTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGTGAATTCATACAAGCTGCTGCAAATCGGAAAGTCTCATTGCTAA  1041

seq1  ATTTCATTTTTATGTCCTCTTCTGTGGCTTTCTTTGTGTTTGTAAAGGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTTTATGTCCTCTTCTGTGGCTTTCTTTGTGTTTGTAAAGGCT  1091

seq1  TTGAATTC  1105
      ||||||||
seq2  TTGAATTC  1099


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