BAC Information

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BAC

Clone NameB6Ng01-281I20
Chromosome6 (Build37)
Map Location 69,489,772 - 69,490,824
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2
Downstream geneGm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281I20.bB6Ng01-281I20.g
ACCGA081000GA081001
length1,1921,058
definitionB6Ng01-281I20.b B6Ng01-281I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgaggcccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattattccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggact
ttttggcttattgactgtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tctacttagatttgaccttagtacaaggagatagaaatggatcaattaac
attcttctgcatgataactgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatgattttagctcccttgtcaaagatcaagt
gaacataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactatactggtaccatgcagttttgatcacagttgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaacatagccattt
ttacaatgttgatcctgccaatccatgagcatgagagatctttccatctt
ctgagatcttctttaatttctttctttagagacttgaagtttttatcata
cagatctttcacttccttagagtcactccaagatattttatattatttgt
gactattgagaagggtgttgtttccctaatttcttctcagcctgttgtct
tgtgtaagaagaaaggccatgacttgttgtgtaattttaaatccagctac
tcattgaagctgttttatcaggcttagagttctctgggtggaaattttta
ggtcacttatataactaatcatatccatcctggccaaaaggaattttgga
ccttcattctaagtgtaatccctgggctccccttttgtgttg
gaattccacaggaagtccaacagtcaattaacctggacccttggctgatt
tcagacacttagccaccaacaaagagcatacacagggtggaccatggaac
ctggccttgtttggtcacagtggacttgatatgcgagggtggttgatatc
caggagtgctacccttttcagaaaacaaggggaggggaaggagtgagaga
ctgtgagagtatacttggaaggggggcagaatttgggatttaagcaaata
cattaattaatttaaaaataaaataccaagaaatacctttacaaaatgtg
aagaaaggttatcagaacatggcatagttgtgtgaaggagatttctcttc
catttctcacatggaaatagttatgcttcagtgtttaaggacatatagcc
tcatcatcacacatggaatgagacagaagatgagtggctcctttgtaata
gtctgcgatgttgtaagtgcagtaaggatacaaagattctgtctttaatg
gtggcattttagacccaggagaaactcatcctctcttgggtgtcagtctc
tttctaattatgtgatgtgatttctatttctgagaagagcctagcaaggt
ttcattcaccatgttgtgacaatttcaaagatttaccaacaaagactgat
agatgagagtacacaattttgtatgcccagcctctaattctgtcagttaa
gtaaatcgctcttcttaacagtgtagatagttgcatatgcacctagagac
acgagctctgggggggtactgattagatcatattgttgttccacctatac
ggttgcagacccctcagctccttgggtactttctctagctcactgtgctc
catccctataggtgactgtgagcaaccacttctgtatttgccaggcactg
gcaaagcctcacatgagacagctatatgagggtcctttcatcaaaaatct
tgctggcatatgcactagtgtctgcgtttggtggctgattatggggatgg
accccaggtgggccagtctctggatgggttcatcctttgtcttatgcccc
aaactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69489772_69490824
seq2: B6Ng01-281I20.g_65_1122 (reverse)

seq1  CAAAGTTTGGGGC-TAAGACAAAGGATGAA-CCATCCAGAGACTGCCCCA  48
      ||||||||||||| |||||||||||||||| |||||||||||||| ||||
seq2  CAAAGTTTGGGGCATAAGACAAAGGATGAACCCATCCAGAGACTGGCCCA  50

seq1  CCTGGGGGTCCAT-CCCATAATCAGCCACCAAACGCAGACACTAGTGCAT  97
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCT-GGGGTCCATCCCCATAATCAGCCACCAAACGCAGACACTAGTGCAT  99

seq1  ATGCCAGCAAGA-TTTTGATGAAAGGACCCTCATATAGCTGTCTCATGTG  146
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCAAGATTTTTGATGAAAGGACCCTCATATAGCTGTCTCATGTG  149

seq1  AGGCTTTGCCAGTGCCTGGCAAATACAGAAGTGGTTGCTCACAGTCACCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGCCAGTGCCTGGCAAATACAGAAGTGGTTGCTCACAGTCACCT  199

seq1  ATA-GGATGGAGCACAGTGAGCTAGAGAAAGTACCCAAGGAGCTGAGGGG  245
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGATGGAGCACAGTGAGCTAGAGAAAGTACCCAAGGAGCTGAGGGG  249

seq1  TCTGCAACCGTATAGGTGGAACAACAATATGATCTAATCAGTA-CCCCCC  294
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGCAACCGTATAGGTGGAACAACAATATGATCTAATCAGTACCCCCCC  299

seq1  AGAGCTCGTGTCTCTAGGTGCATATGCAACTATCTACACTGTTAAGAAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCGTGTCTCTAGGTGCATATGCAACTATCTACACTGTTAAGAAGA  349

seq1  GCGATTTACTTAACTGACAGAATTAGAGGCTGGGCATACAAAATTGTGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTACTTAACTGACAGAATTAGAGGCTGGGCATACAAAATTGTGTA  399

seq1  CTCTCATCTATCAGTCTTTGTTGGTAAATCTTTGAAATTGTCACAACATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCTATCAGTCTTTGTTGGTAAATCTTTGAAATTGTCACAACATG  449

seq1  GTGAATGAAACCTTGCTAGGCTCTTCTCAGAAATAGAAATCACATCACAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAAACCTTGCTAGGCTCTTCTCAGAAATAGAAATCACATCACAT  499

seq1  AATTAGAAAGAGACTGACACCCAAGAGAGGATGAGTTTCTCCTGGGTCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAGAGACTGACACCCAAGAGAGGATGAGTTTCTCCTGGGTCTA  549

seq1  AAATGCCACCATTAAAGACAGAATCTTTGTATCCTTACTGCACTTACAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCACCATTAAAGACAGAATCTTTGTATCCTTACTGCACTTACAAC  599

seq1  ATCGCAGACTATTACAAAGGAGCCACTCATCTTCTGTCTCATTCCATGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCAGACTATTACAAAGGAGCCACTCATCTTCTGTCTCATTCCATGTG  649

seq1  TGATGATGAGGCTATATGTCCTTAAACACTGAAGCATAACTATTTCCATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGAGGCTATATGTCCTTAAACACTGAAGCATAACTATTTCCATG  699

seq1  TGAGAAATGGAAGAGAAATCTCCTTCACACAACTATGCCATGTTCTGATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGGAAGAGAAATCTCCTTCACACAACTATGCCATGTTCTGATA  749

seq1  ACCTTTCTTCACATTTTGTAAAGGTATTTCTTGGTATTTTATTTTTAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTCACATTTTGTAAAGGTATTTCTTGGTATTTTATTTTTAAAT  799

seq1  TAATTAATGTATTTGCTTAAATCCCAAATTCTGCCCCCCTTCCAAGTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATGTATTTGCTTAAATCCCAAATTCTGCCCCCCTTCCAAGTATA  849

seq1  CTCTCACAGTCTCTCACTCCTTCCCCTCCCCTTGTTTTCTGAAAAGGGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAGTCTCTCACTCCTTCCCCTCCCCTTGTTTTCTGAAAAGGGTA  899

seq1  GCACTCCTGGATATCAACCACCCTCGCATATCAAGTCCACTGTGACCAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCTGGATATCAACCACCCTCGCATATCAAGTCCACTGTGACCAAA  949

seq1  CAAGGCCAGGTTCCATGGTCCACCCTGTGTATGCTCTTTGTTGGTGGCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGGTTCCATGGTCCACCCTGTGTATGCTCTTTGTTGGTGGCTA  999

seq1  AGTGTCTGAAATCAGCCAAGGGTCCAGGTTAATTGACTGTTGGACTTCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGAAATCAGCCAAGGGTCCAGGTTAATTGACTGTTGGACTTCCT  1049

seq1  GTGGAATTC  1053
      |||||||||
seq2  GTGGAATTC  1058