BAC Information

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BAC

Clone NameB6Ng01-281J07
Chromosome6 (Build37)
Map Location 113,055,675 - 113,161,849
singlet/doubletdoublet
Overlap geneSetd5, Lhfpl4
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078
Downstream geneMtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281J07.bB6Ng01-281J07.g
ACCGA081022GA081023
length1,134826
definitionB6Ng01-281J07.b B6Ng01-281J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,160,723 - 113,161,849)(113,055,675 - 113,056,500)
sequence
gaattcaagatcatcttaacttcatcataagcaaaaattaactcagtatg
tgttgtggagggttaacatgcagagtaaaacataacatttctggaagaaa
gtgtggaagaaaatgctgcaacattgatcaggcaaattttgcttaaatat
tgagtcaggatgaaaatacatggaaaattgagggggcataagagggagaa
actgatcatactggggctgcgtttgcctcacctaccgagtgagattcagg
aaactaaaagacaactgaaaattccaggttaatgtctgtgttcctaaggg
catctccaacaggagtgttcagaacagcagatgaactgtgcttgtttacg
gtcagggtgtctgtgcctgtgagcatccctaactctgaacagcgaaccta
aaacctcgtaaaaccactgtgcaacttcacagcagaggggaattctctaa
gagaaataagtgagttagatcatctgcttttactcactttaaactttaaa
gttttatctgtttaatagttaaaccctgttgaatagtacatcctctgaat
cctctgatcaaggtaatataaagccacaaaatcataaaaatcataaatat
aagcatgtatgcatatatgctaaccattatcaagacacattcatgtgact
ctgtcttgagaagtctacattcatgtcttggatgtgtactgtaacttttc
taagcatatctgtctctgtctttgtgtctctgtgtctccctgcctctttg
tctctgtctctttctgcgtctctctgtctctatctgtctctgtgtctctg
tctgtctctgtctctcctctgtctgtctgtctgtctgtctgtctctctct
gctttcattctccctttattttaaagagtgcactgactgcttcactctga
ctcatcttaaaattctttttgggcagcattgtcaagagtctggagttgcc
ttgaatagaagactttttaagaaagaaaacagttcctgagagttgtctgt
tgccaaggcttcctgccattactgacagatattcatatatttaaaagatg
gtcattgggtaagaaaaatgtcaatgggaattccatcaaaaggaaaaaaa
actttggttttgtttttttccaaaagacaactgc
gaattcagaatttgtggaaaggcccaatccctaaaatagactcagttctt
tgaagaatttaaatgccaaatgacaatgaaggtaggccttcattatacaa
ttctatatattattcagtttaaatttttttagccttttgtatcccttctc
tttaagttgtccaagattgcccccgctcacagattcccccctcttgtcct
tttacctcccttgtacccaatcttccttgcttacagaaaggaagtggaag
ccccctacctttcaagacgaagtggcactacaccaggatgtgaaagtcca
gcgaaagagacccaaggggcctagggggcagcacacccccagaagccaag
tctattccaggcagtaccagggattagggtctgggctggaaaaatcctgg
tgttttgaatatgttcaggtccagttcagactcttgatcccacagccact
tcttgagtgaggtgggtgttgctctaattcccgtttctcttgccattttc
agtccctgggaattctttccccttcagcaaagcaaagcgactgttccaga
attctgggttgaatggcgtcccttgttaatagtggtttccttaaaactga
ggatactattaaagagcatgtatatttcttcataaagctacataatgttg
atttttattgtgttccttaaagaggaagacatgaaactaccctaggaagt
aatatatgatattctggggtagtctggaattgaaagtcatttttaagctt
attcccataatacaatgggaggagggagggcataggaaagactagttgtc
tttctttattatagtggtttttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113160723_113161849
seq2: B6Ng01-281J07.b_49_1182 (reverse)

seq1  GCAG-TGTCTTTTGAAAAAAAAACAAAAAACAAAAGTTTTTTT--CTTTT  47
      |||| ||||||||| ||||||   | ||||| |||||||||||  |||||
seq2  GCAGTTGTCTTTTGGAAAAAA---ACAAAACCAAAGTTTTTTTTCCTTTT  47

seq1  GAT-GAATTCCCATTTGACATTTTTCTTTACCAATTA-CATCTTTTAAAT  95
      ||| ||||||||| ||||||||||||||  ||||| | ||||||||||||
seq2  GATGGAATTCCCA-TTGACATTTTTCTTACCCAATGACCATCTTTTAAAT  96

seq1  ATATG-ATATCTGTCAGTAATGGCAAGGAGCCTT-GCCACAGAC-ACTCT  142
      ||||| ||||||||||||||||||| | |||||| || |||||| |||||
seq2  ATATGAATATCTGTCAGTAATGGCAGGAAGCCTTGGCAACAGACAACTCT  146

seq1  CAGGAACTGTTTTCTTTCTTAAAAAGTCTTCTATTC-AGGCAACTCCAGA  191
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGAACTGTTTTCTTTCTTAAAAAGTCTTCTATTCAAGGCAACTCCAGA  196

seq1  CTCTTGACAATGCTGCCC-AAAAGAATTTTAAGATGAGTCAGAGTGAAGC  240
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCTTGACAATGCTGCCCAAAAAGAATTTTAAGATGAGTCAGAGTGAAGC  246

seq1  AGTCAGTGCACTCTTTAAAAT-AAGGGAGAATGAAAGCAGAGAGAGACAG  289
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTCAGTGCACTCTTTAAAATAAAGGGAGAATGAAAGCAGAGAGAGACAG  296

seq1  ACAGACAGACAGACAGACAGAGGAGAGACAGAGACAGACAGAGACACAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGACAGAGGAGAGACAGAGACAGACAGAGACACAGA  346

seq1  GACAGATAGAGACAGAGAGACGCAGAAAGAGACAGAGACAAAGAGGCAGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGAGACAGAGAGACGCAGAAAGAGACAGAGACAAAGAGGCAGG  396

seq1  GAGACACAGAGACACAAAGACAGAGACAGATATGCTTAGAAAAGTTACAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGAGACACAAAGACAGAGACAGATATGCTTAGAAAAGTTACAG  446

seq1  TACACATCCAAGACATGAATGTAGACTTCTCAAGACAGAGTCACATGAAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCCAAGACATGAATGTAGACTTCTCAAGACAGAGTCACATGAAT  496

seq1  GTGTCTTGATAATGGTTAGCATATATGCATACATGCTTATATTTATGATT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGATAATGGTTAGCATATATGCATACATGCTTATATTTATGATT  546

seq1  TTTATGATTTTGTGGCTTTATATTACCTTGATCAGAGGATTCAGAGGATG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATTTTGTGGCTTTATATTACCTTGATCAGAGGATTCAGAGGATG  596

seq1  TACTATTCAACAGGGTTTAACTATTAAACAGATAAAACTTTAAAGTTTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCAACAGGGTTTAACTATTAAACAGATAAAACTTTAAAGTTTAA  646

seq1  AGTGAGTAAAAGCAGATGATCTAACTCACTTATTTCTCTTAGAGAATTCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAAAAGCAGATGATCTAACTCACTTATTTCTCTTAGAGAATTCC  696

seq1  CCTCTGCTGTGAAGTTGCACAGTGGTTTTACGAGGTTTTAGGTTCGCTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGTGAAGTTGCACAGTGGTTTTACGAGGTTTTAGGTTCGCTGT  746

seq1  TCAGAGTTAGGGATGCTCACAGGCACAGACACCCTGACCGTAAACAAGCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTAGGGATGCTCACAGGCACAGACACCCTGACCGTAAACAAGCA  796

seq1  CAGTTCATCTGCTGTTCTGAACACTCCTGTTGGAGATGCCCTTAGGAACA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATCTGCTGTTCTGAACACTCCTGTTGGAGATGCCCTTAGGAACA  846

seq1  CAGACATTAACCTGGAATTTTCAGTTGTCTTTTAGTTTCCTGAATCTCAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTAACCTGGAATTTTCAGTTGTCTTTTAGTTTCCTGAATCTCAC  896

seq1  TCGGTAGGTGAGGCAAACGCAGCCCCAGTATGATCAGTTTCTCCCTCTTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTAGGTGAGGCAAACGCAGCCCCAGTATGATCAGTTTCTCCCTCTTA  946

seq1  TGCCCCCTCAATTTTCCATGTATTTTCATCCTGACTCAATATTTAAGCAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTCAATTTTCCATGTATTTTCATCCTGACTCAATATTTAAGCAA  996

seq1  AATTTGCCTGATCAATGTTGCAGCATTTTCTTCCACACTTTCTTCCAGAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCTGATCAATGTTGCAGCATTTTCTTCCACACTTTCTTCCAGAA  1046

seq1  ATGTTATGTTTTACTCTGCATGTTAACCCTCCACAACACATACTGAGTTA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTTTTACTCTGCATGTTAACCCTCCACAACACATACTGAGTTA  1096

seq1  ATTTTTGCTTATGATGAAGTTAAGATGATCTTGAATTC  1127
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTTATGATGAAGTTAAGATGATCTTGAATTC  1134

seq1: chr6_113055675_113056500
seq2: B6Ng01-281J07.g_67_892

seq1  GAATTCAGAATTTGTGGAAAGGCCCAATCCCTAAAATAGACTCAGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTTGTGGAAAGGCCCAATCCCTAAAATAGACTCAGTTCTT  50

seq1  TGAAGAATTTAAATGCCAAATGACAATGAAGGTAGGCCTTCATTATACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATTTAAATGCCAAATGACAATGAAGGTAGGCCTTCATTATACAA  100

seq1  TTCTATATATTATTCAGTTTAAATTTTTTTAGCCTTTTGTATCCCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATATTATTCAGTTTAAATTTTTTTAGCCTTTTGTATCCCTTCTC  150

seq1  TTTAAGTTGTCCAAGATTGCCCCCGCTCACAGATTCCCCCCTCTTGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGTCCAAGATTGCCCCCGCTCACAGATTCCCCCCTCTTGTCCT  200

seq1  TTTACCTCCCTTGTACCCAATCTTCCTTGCTTACAGAAAGGAAGTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCCCTTGTACCCAATCTTCCTTGCTTACAGAAAGGAAGTGGAAG  250

seq1  CCCCCTACCTTTCAAGACGAAGTGGCACTACACCAGGATGTGAAAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTACCTTTCAAGACGAAGTGGCACTACACCAGGATGTGAAAGTCCA  300

seq1  GCGAAAGAGACCCAAGGGGCCTAGGGGGCAGCACACCCCCAGAAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAAGAGACCCAAGGGGCCTAGGGGGCAGCACACCCCCAGAAGCCAAG  350

seq1  TCTATTCCAGGCAGTACCAGGGATTAGGGTCTGGGCTGGAAAAATCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCAGGCAGTACCAGGGATTAGGGTCTGGGCTGGAAAAATCCTGG  400

seq1  TGTTTTGAATATGTTCAGGTCCAGTTCAGACTCTTGATCCCACAGCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAATATGTTCAGGTCCAGTTCAGACTCTTGATCCCACAGCCACT  450

seq1  TCTTGAGTGAGGTGGGTGTTGCTCTAATTCCCGTTTCTCTTGCCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGAGGTGGGTGTTGCTCTAATTCCCGTTTCTCTTGCCATTTTC  500

seq1  AGTCCCTGGGAATTCTTTCCCCTTCAGCAAAGCAAAGCGACTGTTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGGGAATTCTTTCCCCTTCAGCAAAGCAAAGCGACTGTTCCAGA  550

seq1  ATTCTGGGTTGAATGGCGTCCCTTGTTAATAGTGGTTTCCTTAAAACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGTTGAATGGCGTCCCTTGTTAATAGTGGTTTCCTTAAAACTGA  600

seq1  GGATACTATTAAAGAGCATGTATATTTCTTCATAAAGCTACATAATGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTATTAAAGAGCATGTATATTTCTTCATAAAGCTACATAATGTTG  650

seq1  ATTTTTATTGTGTTCCTTAAAGAGGAAGACATGAAACTACCCTAGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTGTGTTCCTTAAAGAGGAAGACATGAAACTACCCTAGGAAGT  700

seq1  AATATATGATATTCTGGGGTAGTCTGGAATTGAAAGTCATTTTTAAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATATTCTGGGGTAGTCTGGAATTGAAAGTCATTTTTAAGCTT  750

seq1  ATTCCCATAATACAATGGGAGGAGGGAGGGCATAGGAAAGACTAGTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATAATACAATGGGAGGAGGGAGGGCATAGGAAAGACTAGTTGTC  800

seq1  TTTCTTTATTATAGTGGTTTTTGTTG  826
      ||||||||||||||||||||||||||
seq2  TTTCTTTATTATAGTGGTTTTTGTTG  826