BAC Information

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BAC

Clone NameB6Ng01-281K17
Chromosome6 (Build37)
Map Location 41,900,237 - 42,029,780
singlet/doubletdoublet
Overlap geneSval1, Sval3, Sva
Upstream geneLOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2
Downstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281K17.bB6Ng01-281K17.g
ACCGA081088GA081089
length1,1181,130
definitionB6Ng01-281K17.b B6Ng01-281K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,900,237 - 41,901,349)(42,028,673 - 42,029,780)
sequence
gaattctaagctatctaatccatctactcttagatagcatcttgccatcc
atcaatatctcctacttcaatagtaagtaggcaaaaccatgaatcctttg
gttacactaactctctaagactttcatcagcttgtgtattatcttgcagt
tcaatggaagtgacaatggtttctctttgaaaatgaagtctggcacgttt
acccacagctgtcctctatacacatgaggacaaagcaagctgagcagtaa
ctgaagttagagaacatagaactaggatgacaagaagtttcctggaagtt
tctgaatttgtcatcctacatagttactgtaaacctaagtgtcatgaaga
accagtatacacggtactggccagttttgtgtgtcagtttgatacaagct
ggagttatcacaaagaaaggaaccttccttgaggaaatgcctccatgaga
tccagctgtaaggcatttgcacaattatcaagtgagggtggcctagacca
ctgtgggtggtgccatccctgggctagcagtcttgggttctataagcaag
caagctgagcaagccaggggaagcaagctaataagcagcattcctccatg
gctttggcacccatcctgcctctaagttcctgccctatgtgagttcctgt
tctgactttctttggtgatgaacagcaatgtggaagtgtaacctgaataa
aacctttccccccaaacttgcttcttagtcataatgttttgtgcaggaac
agaaaccctgactgagacacacacgaagtgaaggtatccaagatctttct
gataatatggttaaaatcatatcaactatatatgtataccctagtcacat
atgacttgtgacttgaatatatgccttgaattttccagaaacattctctg
tatgtaaagaatggccatcatttcctgcaaaagatcactatacctaagaa
ccttaattattggggaattgagtaataacaatatgctgagtcattaatca
ctgcagatattttttgagtttgtgttctctgagttatcaggaggtgaggc
atgggtatccagaagaaaaaagagaggtggtttgaagtttacaattttcc
tccacaagtaagatcagg
gaattctttatttatacatgacttttgactaaaagatttgtatcttttga
ctgaaggaaagcaatatctaagtattagtcaagaattgtcaatctgagac
tatttctatttcttcaataaacttgtgattttaagttaaaaaagataagg
gcttctacctgtttacctgtgttctgtatctctttaagtgagttatttat
gtacttcttaaagtcatctctcaatgtcatgagatgggattttatatctg
aatcttgcttttcaggtgtattggggtgtccagggcttgctgtggtggga
gaactgggttctgatatgttcttgtgcttgcctctcaccatctggttatg
tattgtgctaactgaccttgctgtctctgactggagcctgtgcctcttgt
gagcctgtgatcctgtgatcctgtggtcctgtgatcctgtgatcctgtgg
tcctgtgatcctggttgtgtcagacctcctgggagtacaactatgtctgt
gatcctgtgatcctgagatgctcggtgtgtcagggttcctgggagtcaag
ctgcctctgggtgtgggtggagtgagttaagagccagagcccagtgtcag
atctggacataggtgcaaaccagaaggatcctgtgcttctagctggacag
gggttcctgcatcccctgggactagagggttccagttgcaccaggtattt
ggtcagaggttggggcttcactttgtgatgctgggtatttcagagctcct
gggagtcatgctttcctctgagtgtgggtagagagccagagcccagggtt
ctttttctggctgaggtgcaaaccagaaggaacatgcgtctctggcaaaa
atggtttttgtcttggtgctcctttactaccatgctgaaacttcttggct
gtacaccttttatttcctttgaaaggtggcaataatttaacgttcaaggg
agatgagcagtaggtactgtagggttactgcccagcttcactcaggacag
agtagggcattggactccaaaaagtattttagttaacagaatgaatgtag
gaaaaccagggaagtgccaaagggccagtcttcaagaaatgaatttgggt
tccagaaagaaatctaaaggagccgggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41900237_41901349
seq2: B6Ng01-281K17.b_47_1164

seq1  GAATTCTAAGCTATCTAATCCATCTACTCTTAGATAGCATCTTGCCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCTATCTAATCCATCTACTCTTAGATAGCATCTTGCCATCC  50

seq1  ATCAATATCTCCTACTTCAATAGTAAGTAGGCAAAACCATGAATCCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATCTCCTACTTCAATAGTAAGTAGGCAAAACCATGAATCCTTTG  100

seq1  GTTACACTAACTCTCTAAGACTTTCATCAGCTTGTGTATTATCTTGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTAACTCTCTAAGACTTTCATCAGCTTGTGTATTATCTTGCAGT  150

seq1  TCAATGGAAGTGACAATGGTTTCTCTTTGAAAATGAAGTCTGGCACGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAAGTGACAATGGTTTCTCTTTGAAAATGAAGTCTGGCACGTTT  200

seq1  ACCCACAGCTGTCCTCTATACACATGAGGACAAAGCAAGCTGAGCAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGCTGTCCTCTATACACATGAGGACAAAGCAAGCTGAGCAGTAA  250

seq1  CTGAAGTTAGAGAACATAGAACTAGGATGACAAGAAGTTTCCTGGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTAGAGAACATAGAACTAGGATGACAAGAAGTTTCCTGGAAGTT  300

seq1  TCTGAATTTGTCATCCTACATAGTTACTGTAAACCTAAGTGTCATGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTGTCATCCTACATAGTTACTGTAAACCTAAGTGTCATGAAGA  350

seq1  ACCAGTATACACGGTACTGGCCAGTTTTGTGTGTCAGTTTGATACAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTATACACGGTACTGGCCAGTTTTGTGTGTCAGTTTGATACAAGCT  400

seq1  GGAGTTATCACAAAGAAAGGAACCTTCCTTGAGGAAATGCCTCCATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATCACAAAGAAAGGAACCTTCCTTGAGGAAATGCCTCCATGAGA  450

seq1  TCCAGCTGTAAGGCATTTGCACAATTATCAAGTGAGGGTGGCCTAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTAAGGCATTTGCACAATTATCAAGTGAGGGTGGCCTAGACCA  500

seq1  CTGTGGGTGGTGCCATCCCTGGGCTAGCAGTCTTGGGTTCTATAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGGTGCCATCCCTGGGCTAGCAGTCTTGGGTTCTATAAGCAAG  550

seq1  CAAGCTGAGCAAGCCAGGGGAAGCAAGCTAATAAGCAGCATTCCTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAGCAAGCCAGGGGAAGCAAGCTAATAAGCAGCATTCCTCCATG  600

seq1  GCTTTGGCACCCATCCTGCCTCTAAGTTCCTGCCCTATGTGAGTTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCACCCATCCTGCCTCTAAGTTCCTGCCCTATGTGAGTTCCTGT  650

seq1  TCTGACTTTCTTTGGTGATGAACAGCAATGTGGAAGTGTAACCTGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTCTTTGGTGATGAACAGCAATGTGGAAGTGTAACCTGAATAA  700

seq1  AACCTTTCCCCCCAAACTTGCTTCTTAGTCATAATGTTTTGTGCAGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCCCCCCAAACTTGCTTCTTAGTCATAATGTTTTGTGCAGGAAC  750

seq1  AGAAACCCTGACTGAGACACACACGAAGTGAAGGTATCCAAGATCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGACTGAGACACACACGAAGTGAAGGTATCCAAGATCTTTCT  800

seq1  GATAATATGGTTAAAATCATATCAACTATATATGTATACCCTAGTCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATGGTTAAAATCATATCAACTATATATGTATACCCTAGTCACAT  850

seq1  ATGACTTGTGACTTGAATATATGCCTTGAATTTTCCAGAAACATTCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGTGACTTGAATATATGCCTTGAATTTTCCAGAAACATTCTCTG  900

seq1  TATGTAAAGAATGGCCATCATTTCCTGCAAAAGATCACTATACCTAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAGAATGGCCATCATTTCCTGCAAAAGATCACTATACCTAAGAA  950

seq1  CCCTAATTATTGGGGAATTGAGTAATAACAATATGCTGAGTCATTAATCA  1000
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTTAATTATTGGGGAATTGAGTAATAACAATATGCTGAGTCATTAATC-  999

seq1  ACTGCAGAATATTTTTGAGTTTGTGTTCTCTGAGTTATCAGGGAGGTGAG  1050
      ||||||||   ||||||||||||||||||||||||||||| |||||||||
seq2  ACTGCAGATATTTTTTGAGTTTGTGTTCTCTGAGTTATCA-GGAGGTGAG  1048

seq1  GCAT-GGTATCCAGAAG-AAAAAGAGAGGTGG-TTGAAGTTTACA---TT  1094
      |||| |||||||||||| |||||||||||||| ||||||||||||   ||
seq2  GCATGGGTATCCAGAAGAAAAAAGAGAGGTGGTTTGAAGTTTACAATTTT  1098

seq1  TCTCCAC-AGTAAGATCAGG  1113
       |||||| ||||||||||||
seq2  CCTCCACAAGTAAGATCAGG  1118

seq1: chr6_42028673_42029780
seq2: B6Ng01-281K17.g_69_1198 (reverse)

seq1  TTG-CCTGCTCCTT--AAATTCTCTCTGGAACCC-AATTCATTCCT--GA  44
      ||| || |||||||   | |||| |||||||||| |||||||| ||   |
seq2  TTGCCCGGCTCCTTTAGATTTCTTTCTGGAACCCAAATTCATTTCTTGAA  50

seq1  GACTGG-CCTCTGGCACTTCC--TGTTCTCCTACATTCA-TCTGTTACTT  90
      |||||| ||| ||||||||||   ||| ||||||||||| |||||||  |
seq2  GACTGGCCCTTTGGCACTTCCCTGGTTTTCCTACATTCATTCTGTTAACT  100

seq1  AAAATA-TTTTTTGAGT-CAATGCCCTACTTCTGTCCTGAGTTGAGCT-G  137
      |||||| ||||| |||| ||||||||||| ||||||||||||  |||| |
seq2  AAAATACTTTTTGGAGTCCAATGCCCTAC-TCTGTCCTGAGTGAAGCTGG  149

seq1  GCAGT-ACCCTACAGTACCTACTGCTCATCTCCC-TGAACGTT-AATTAT  184
      ||||| |||||||||||||||||||||||||||| |||||||| ||||||
seq2  GCAGTAACCCTACAGTACCTACTGCTCATCTCCCTTGAACGTTAAATTAT  199

seq1  TGCCA-CTTTC-AAGGAAAT-AAAGGTGTACAGCCAAGAAG-TTCAGCAT  230
      ||||| ||||| |||||||| |||||||||||||||||||| ||||||||
seq2  TGCCACCTTTCAAAGGAAATAAAAGGTGTACAGCCAAGAAGTTTCAGCAT  249

seq1  GGTAGTAAAGGAGCACCAAGAC-AAAACCATTTTTGCCAGAGACGCATGT  279
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTAGTAAAGGAGCACCAAGACAAAAACCATTTTTGCCAGAGACGCATGT  299

seq1  TCCTTCTGGTTTGCACCTTCAGCCAG-AAAAGAACCCTGGGCTCTGGCTC  328
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TCCTTCTGGTTTGCACC-TCAGCCAGAAAAAGAACCCTGGGCTCTGGCTC  348

seq1  TCTACCCACACTCAGAGG-AAGCATGACTCCCAGGAGCTCTGAAATACCC  377
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTACCCACACTCAGAGGAAAGCATGACTCCCAGGAGCTCTGAAATACCC  398

seq1  AGCATCAC-AAGTGAAGCCCCAACCTCTGACCAAATACCTGGTGCAACTG  426
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACAAAGTGAAGCCCCAACCTCTGACCAAATACCTGGTGCAACTG  448

seq1  GAACCCTCTAGTCCCAGGGGATGCAGGAACCCCTGTCCAGCTAGAAGCAC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTCTAGTCCCAGGGGATGCAGGAACCCCTGTCCAGCTAGAAGCAC  498

seq1  AGGATCCTTCTGGTTTGCACCTATGTCCAGATCTGACACTGGGCTCTGGC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTTCTGGTTTGCACCTATGTCCAGATCTGACACTGGGCTCTGGC  548

seq1  TCTTAACTCACTCCACCCACACCCAGAGGCAGCTTGACTCCCAGGAACCC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTCACTCCACCCACACCCAGAGGCAGCTTGACTCCCAGGAACCC  598

seq1  TGACACACCGAGCATCTCAGGATCACAGGATCACAGACATAGTTGTACTC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCGAGCATCTCAGGATCACAGGATCACAGACATAGTTGTACTC  648

seq1  CCAGGAGGTCTGACACAACCAGGATCACAGGACCACAGGATCACAGGATC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGTCTGACACAACCAGGATCACAGGACCACAGGATCACAGGATC  698

seq1  ACAGGACCACAGGATCACAGGATCACAGGCTCACAAGAGGCACAGGCTCC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCACAGGATCACAGGATCACAGGCTCACAAGAGGCACAGGCTCC  748

seq1  AGTCAGAGACAGCAAGGTCAGTTAGCACAATACATAACCAGATGGTGAGA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGACAGCAAGGTCAGTTAGCACAATACATAACCAGATGGTGAGA  798

seq1  GGCAAGCACAAGAACATATCAGAACCCAGTTCTCCCACCACAGCAAGCCC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACAAGAACATATCAGAACCCAGTTCTCCCACCACAGCAAGCCC  848

seq1  TGGACACCCCAATACACCTGAAAAGCAAGATTCAGATATAAAATCCCATC  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCCCAATACACCTGAAAAGCAAGATTCAGATATAAAATCCCATC  898

seq1  TCATGACATTGAGAGATGACTTTAAGAAGTACATAAATAACTCACTTAAA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACATTGAGAGATGACTTTAAGAAGTACATAAATAACTCACTTAAA  948

seq1  GAGATACAGAACACAGGTAAACAGGTAGAAGCCCTTATCTTTTTTAACTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGAACACAGGTAAACAGGTAGAAGCCCTTATCTTTTTTAACTT  998

seq1  AAAATCACAAGTTTATTGAAGAAATAGAAATAGTCTCAGATTGACAATTC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACAAGTTTATTGAAGAAATAGAAATAGTCTCAGATTGACAATTC  1048

seq1  TTGACTAATACTTAGATATTGCTTTCCTTCAGTCAAAAGATACAAATCTT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAATACTTAGATATTGCTTTCCTTCAGTCAAAAGATACAAATCTT  1098

seq1  TTAGTCAAAAGTCATGTATAAATAAAGAATTC  1108
      ||||||||||||||||||||||||||||||||
seq2  TTAGTCAAAAGTCATGTATAAATAAAGAATTC  1130