BAC Information

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BAC

Clone NameB6Ng01-281L16
Chromosome6 (Build37)6 (Build37)
Map Location 68,372,783 - 68,372,84670,699,497 - 70,700,558
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneIl23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408
Downstream geneGm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281L16.bB6Ng01-281L16.g
ACCGA081132GA081133
length641,083
definitionB6Ng01-281L16.b B6Ng01-281L16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,372,783 - 68,372,846)(70,699,497 - 70,700,558)
sequence
gaattcctttcttcatttttttgtatttctttccttctcctcctcctcct
cctcctcctcctcc
gaattccaatggctatttttgttgttgtggtggtggttttgagacagggt
cttactctgtagacaggactcctggttctggggctctgatgttggtaatt
ttaggagagactttgacgcttgaggacagctcacgcaaccccttctttta
aaacccagttacttttctgacacactgatggttagttttcatctggcttt
aagaagtctccattagagctaaaatgcttcatgaaaagcgtcttagcccg
gggagtgggggagtagagaggattactttccaatggctactcattgtact
gctagaatactttgctccaaaaaattacatgaagaaatttccagcaggca
aatcagtaaaaagaacatgtattcgtctgtagttccttttctttaacata
ttcagaaatgactcaaggatacaagtagacacacacatgtgggagttaga
gagaattggcttgatcaaaacatgcagctatcccagacataccctcacta
attaatcccagacagctgtgtaagcatagcacattctcaccatggcttaa
cctgtttttacagcatacacatggcttgacaacaaagcctaattggtaat
tctgtttgctggaggcagagattttacctttcaggtcatttaatcccagc
tgttaggctgtgtgtttggttaagtagtagctttccacttcaggggctgg
agcaggctctccacactgagagatgatccccagggagcccagcatgggag
gcattggcttcatctctgtttcgaaaacaaggcagaggctgctgtcatgc
ttccattgtggcataattgttctagtttctagttgctggaatattctttt
attataaaacaagtatttcagcatccagaaattattagcgcatattaatt
tgcacaaaataccaattttccatttttttttttttttttgagacaggggt
ttctctgtattagccctgggctgtcttggaactcacctctggtagaatca
gctggcttcgaactcagaaattccgcctgcctctggctttcttgagtgct
gggattaaggcggagcgccaacaagccctggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68372783_68372846
seq2: B6Ng01-281L16.b_42_105

seq1  GAATTCCTTTCTTCATTTTTTTGTATTTCTTTCCTTCTCCTCCTCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTTCATTTTTTTGTATTTCTTTCCTTCTCCTCCTCCTCCT  50

seq1  CCTCCTCCTCCTCC  64
      ||||||||||||||
seq2  CCTCCTCCTCCTCC  64

seq1: chr6_70699497_70700558
seq2: B6Ng01-281L16.g_68_1150 (reverse)

seq1  GGCCA-GGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGG--AGGCA  47
      ||||| ||| || |||||| |  | |||||||||||||||| |  || ||
seq2  GGCCAGGGCTTGTTGGCGCTCCGCCTTAATCCCAGCACTCAAGAAAGCCA  50

seq1  GAGGCAGGCGG-ATTTCTGAGTTCGAGGCCAGCCTGA-TCTA-CAGA-GT  93
      ||||||||||| |||||||||||||| ||||| |||| |||| |||| ||
seq2  GAGGCAGGCGGAATTTCTGAGTTCGAAGCCAG-CTGATTCTACCAGAGGT  99

seq1  GAGTTCCAGGACAG-CCAGGGCT-ATACAGAGAAA-CCCTGTCTCAAAAA  140
      |||||||| ||||| |||||||| ||||||||||| ||||||||||||||
seq2  GAGTTCCAAGACAGCCCAGGGCTAATACAGAGAAACCCCTGTCTCAAAAA  149

seq1  AAAAAAAAAA---TGAAAATTGGTATTTTGTGC-AATTAATATGCGCTAA  186
      ||||||||||    ||||||||||||||||||| ||||||||||||||||
seq2  AAAAAAAAAAAATGGAAAATTGGTATTTTGTGCAAATTAATATGCGCTAA  199

seq1  TAATTTCTGGATGCTG-AATAC-TGTTTTATAAT-AAAGAATA-TCCAGC  232
      |||||||||||||||| ||||| ||||||||||| |||||||| ||||||
seq2  TAATTTCTGGATGCTGAAATACTTGTTTTATAATAAAAGAATATTCCAGC  249

seq1  AACTAG-AACTAGAACAA-TATGCCAC-ATGGAAGCATGACAGCAGCCTC  279
      |||||| ||||||||||| |||||||| ||||||||||||||||||||||
seq2  AACTAGAAACTAGAACAATTATGCCACAATGGAAGCATGACAGCAGCCTC  299

seq1  TGCCTTGTTTTCG-AACAGAGATGAAGCCAATGCCTCCCATGCTGGGCTC  328
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTTTCGAAACAGAGATGAAGCCAATGCCTCCCATGCTGGGCTC  349

seq1  CCTGGGGATCATCTCTCAGTGTGGAGAGCCTGCTCCAGCCCCTGAAGTGG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGATCATCTCTCAGTGTGGAGAGCCTGCTCCAGCCCCTGAAGTGG  399

seq1  AAAGCTACTACTTAACCAAACACACAGCCTAACAGCTGGGATTAAATGAC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACTACTTAACCAAACACACAGCCTAACAGCTGGGATTAAATGAC  449

seq1  CTGAAAGGTAAAATCTCTGCCTCCAGCAAACAGAATTACCAATTAGGCTT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGTAAAATCTCTGCCTCCAGCAAACAGAATTACCAATTAGGCTT  499

seq1  TGTTGTCAAGCCATGTGTATGCTGTAAAAACAGGTTAAGCCATGGTGAGA  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAAGCCATGTGTATGCTGTAAAAACAGGTTAAGCCATGGTGAGA  549

seq1  ATGTGCTATGCTTACACAGCTGTCTGGGATTAATTAGTGAGGGTATGTCT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTATGCTTACACAGCTGTCTGGGATTAATTAGTGAGGGTATGTCT  599

seq1  GGGATAGCTGCATGTTTTGATCAAGCCAATTCTCTCTAACTCCCACATGT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCTGCATGTTTTGATCAAGCCAATTCTCTCTAACTCCCACATGT  649

seq1  GTGTGTCTACTTGTATCCTTGAGTCATTTCTGAATATGTTAAAGAAAAGG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTACTTGTATCCTTGAGTCATTTCTGAATATGTTAAAGAAAAGG  699

seq1  AACTACAGACGAATACATGTTCTTTTTACTGATTTGCCTGCTGGAAATTT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGACGAATACATGTTCTTTTTACTGATTTGCCTGCTGGAAATTT  749

seq1  CTTCATGTAATTTTTTGGAGCAAAGTATTCTAGCAGTACAATGAGTAGCC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTAATTTTTTGGAGCAAAGTATTCTAGCAGTACAATGAGTAGCC  799

seq1  ATTGGAAAGTAATCCTCTCTACTCCCCCACTCCCCGGGCTAAGACGCTTT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAGTAATCCTCTCTACTCCCCCACTCCCCGGGCTAAGACGCTTT  849

seq1  TCATGAAGCATTTTAGCTCTAATGGAGACTTCTTAAAGCCAGATGAAAAC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCATTTTAGCTCTAATGGAGACTTCTTAAAGCCAGATGAAAAC  899

seq1  TAACCATCAGTGTGTCAGAAAAGTAACTGGGTTTTAAAAGAAGGGGTTGC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCAGTGTGTCAGAAAAGTAACTGGGTTTTAAAAGAAGGGGTTGC  949

seq1  GTGAGCTGTCCTCAAGCGTCAAAGTCTCTCCTAAAATTACCAACATCAGA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGTCCTCAAGCGTCAAAGTCTCTCCTAAAATTACCAACATCAGA  999

seq1  GCCCCAGAACCAGGAGTCCTGTCTACAGAGTAAGACCCTGTCTCAAAACC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAACCAGGAGTCCTGTCTACAGAGTAAGACCCTGTCTCAAAACC  1049

seq1  ACCACCACAACAACAAAAATAGCCATTGGAATTC  1062
      ||||||||||||||||||||||||||||||||||
seq2  ACCACCACAACAACAAAAATAGCCATTGGAATTC  1083