BAC Information

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BAC

Clone NameB6Ng01-281P16
Chromosome6 (Build37)
Map Location 87,163,725 - 87,277,023
singlet/doubletdoublet
Overlap geneAntxr1
Upstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneGkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P16.bB6Ng01-281P16.g
ACCGA081316GA081317
length1,124484
definitionB6Ng01-281P16.b B6Ng01-281P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,163,725 - 87,164,835)(87,276,534 - 87,277,023)
sequence
gaattcactacacagatcatcctaatgagggacccaagggagcctctcac
tactactgttcttcagcgcattttaaagacatctttgaagctattgcctc
cactcttcctgttttcaggtgtactgttttcattgtttactagatccagt
ttggaagagctgtccccgatcacctaattctcaggtagtttcaataatgc
agccatgcctgagagccacaaaatggaatctccagagggactcaagagaa
ggtaaggatggaagaagaacaatgggagaaagcacagtttccagttcctg
gctctttacccagggatctgaagttaaagggctttcccattcctttagct
gagaggggataatgatgctttggtggcatgtcatctccagtcatggccaa
cctctttccactgtacctgcaggcataggagcagggtgcatgggtggatt
tcaaggcgagcaatgaggcaggcttaggtggagggaagctagcagtagaa
gatggagatgcagagtagagggcagggatgcagagtggcgggcagggaca
cagaggggagggcagggatgcagaggggagggcaggcccctgtatcgtgg
aaactaatttcctaagcggcagagtgagaaggtccagatgggacgagtag
gctggagagtgatcaggtcacacacctgtccaagcctgagattctgggtg
agttgctgtctgtctgtgccaggttttagttacaccagtcactagcaact
ccttggtgtgtgtgtgtgtgtgtgtgtctggccctacaactcagtgttgt
gaaatatgtggagagccatatctgaagactttgtgtttcactctaaggcc
tattcaagtttctagttggtcactagagagatccaggccatcttcccctc
cctgccttccccagcactgggagctaagttacatgcctcactttattttt
ttaacatagggtttccatccccaagaaccctcatgtcccctctggtacaa
ttacagcttcttctgcagtcccgcttatcacggccatgatcttagccaat
catgaacattgaagtgcagttaagagtacttgggccttcacaggacatgt
acacacatacacattgtacttaca
ttgctcggatgagagaggccaatgtgatgtggaggagcagagctggtgta
gcagcaaggccatttcttgcccatcagtgttgacaaatcttatgttgtgc
acacacagaccagccatgatgctcactaccttggctcctttcccatcaag
actccagaaggaaccatgtgtgcttcgtgcaggataggggaaaaccaagc
ctcactcataggggttatgaaggccaatgtagaatcagaaaactccagtt
tcaaactcaatgtttgaccaaacattatgagcttgggatattaaatcagt
taatctctctgaagcttggtttgctctcttaataaaatgggcattaaaat
ttattctcacagaaatgttctaaagattaaaatctttcaccagcatttgg
caaatgcataccagatgatgagtgataaagatggaggtgctgatgttgct
ggtgataaggatgatggtggtgatatggagatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87163725_87164835
seq2: B6Ng01-281P16.b_51_1174

seq1  GAATTCACTACACAGATCATCCTAATGAGGGACCCAAGGGAGCCTCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACACAGATCATCCTAATGAGGGACCCAAGGGAGCCTCTCAC  50

seq1  TACTACTGTTCTTCAGCGCATTTTAAAGACATCTTTGAAGCTATTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTTCTTCAGCGCATTTTAAAGACATCTTTGAAGCTATTGCCTC  100

seq1  CACTCTTCCTGTTTTCAGGTGTACTGTTTTCATTGTTTACTAGATCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCCTGTTTTCAGGTGTACTGTTTTCATTGTTTACTAGATCCAGT  150

seq1  TTGGAAGAGCTGTCCCCGATCACCTAATTCTCAGGTAGTTTCAATAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGCTGTCCCCGATCACCTAATTCTCAGGTAGTTTCAATAATGC  200

seq1  AGCCATGCCTGAGAGCCACAAAATGGAATCTCCAGAGGGACTCAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCCTGAGAGCCACAAAATGGAATCTCCAGAGGGACTCAAGAGAA  250

seq1  GGTAAGGATGGAAGAAGAACAATGGGAGAAAGCACAGTTTCCAGTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGATGGAAGAAGAACAATGGGAGAAAGCACAGTTTCCAGTTCCTG  300

seq1  GCTCTTTACCCAGGGATCTGAAGTTAAAGGGCTTTCCCATTCCTTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTACCCAGGGATCTGAAGTTAAAGGGCTTTCCCATTCCTTTAGCT  350

seq1  GAGAGGGGATAATGATGCTTTGGTGGCATGTCATCTCCAGTCATGGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGATAATGATGCTTTGGTGGCATGTCATCTCCAGTCATGGCCAA  400

seq1  CCTCTTTCCACTGTACCTGCAGGCATAGGAGCAGGGTGCATGGGTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCACTGTACCTGCAGGCATAGGAGCAGGGTGCATGGGTGGATT  450

seq1  TCAAGGCGAGCAATGAGGCAGGCTTAGGTGGAGGGAAGCTAGCAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCGAGCAATGAGGCAGGCTTAGGTGGAGGGAAGCTAGCAGTAGAA  500

seq1  GATGGAGATGCAGAGTAGAGGGCAGGGATGCAGAGTGGCGGGCAGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATGCAGAGTAGAGGGCAGGGATGCAGAGTGGCGGGCAGGGACA  550

seq1  CAGAGGGGAGGGCAGGGATGCAGAGGGGAGGGCAGGCCCCTGTATCGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGAGGGCAGGGATGCAGAGGGGAGGGCAGGCCCCTGTATCGTGG  600

seq1  AAACTAATTTCCTAAGCGGCAGAGTGAGAAGGTCCAGATGGGACGAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATTTCCTAAGCGGCAGAGTGAGAAGGTCCAGATGGGACGAGTAG  650

seq1  GCTGGAGAGTGATCAGGTCACACACCTGTCCAAGCCTGAGATTCTGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGTGATCAGGTCACACACCTGTCCAAGCCTGAGATTCTGGGTG  700

seq1  AGTTGCTGTCTGTCTGTGCCAGGTTTTAGTTACACCAGTCACTAGCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGTCTGTCTGTGCCAGGTTTTAGTTACACCAGTCACTAGCAACT  750

seq1  CCTTGGTGTGTGTGTGTGTGTGTGTGTCTGGCCCTACAACTCAGTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGTGTGTGTGTGTGTGTGTGTCTGGCCCTACAACTCAGTGTTGT  800

seq1  GAAATATGTGGAGAGCCATATCTGAAGACTTTGTGTTTCACTCTAAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTGGAGAGCCATATCTGAAGACTTTGTGTTTCACTCTAAGGCC  850

seq1  TA-TCAAG-TTCTAGTTGGTCACTAGAGAGATCCA-GCCATCTT-CCCTC  896
      || ||||| |||||||||||||||||||||||||| |||||||| |||||
seq2  TATTCAAGTTTCTAGTTGGTCACTAGAGAGATCCAGGCCATCTTCCCCTC  900

seq1  CCTGCC-TCCCCAGCACTGGGAGCTAAG-TACATGCCTCACTTTATTTTT  944
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGCCTTCCCCAGCACTGGGAGCTAAGTTACATGCCTCACTTTATTTTT  950

seq1  TTAACATAGG--TTCCATCCCCAAG-ACCCTCATGT-CCCTCT-GTACAA  989
      ||||||||||  ||||||||||||| |||||||||| |||||| ||||||
seq2  TTAACATAGGGTTTCCATCCCCAAGAACCCTCATGTCCCCTCTGGTACAA  1000

seq1  TTACAGC-TCTTCTGCAGTCCCGCTAATCAC-GCCATGATCCTTAGCAAA  1037
      ||||||| ||||||||||||||||| ||||| |||||||| |||||| ||
seq2  TTACAGCTTCTTCTGCAGTCCCGCTTATCACGGCCATGAT-CTTAGCCAA  1049

seq1  TCATG-ACATTTGAGTGCAGGTAAGAGTACTTTGGCCTTCACAGGAACAT  1086
      ||||| |||||  ||||||| ||||||||||| |||||||||||| ||||
seq2  TCATGAACATTGAAGTGCAGTTAAGAGTACTTGGGCCTTCACAGG-ACAT  1098

seq1  GTACACACATACACA-TGTACCTACA  1111
      ||||||||||||||| ||||| ||||
seq2  GTACACACATACACATTGTACTTACA  1124

seq1: chr6_87276534_87277023
seq2: B6Ng01-281P16.g_68_557 (reverse)

seq1  ATATCTCCATATCACCACCATCATCCTTATCACCAGCAACATCAGCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCATATCACCACCATCATCCTTATCACCAGCAACATCAGCACCT  50

seq1  CCATCTTTATCACTCATCATCTGGTATGCATTTGCCAAATGCTGGTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTATCACTCATCATCTGGTATGCATTTGCCAAATGCTGGTGAAA  100

seq1  GATTTTAATCTTTAGAACATTTCTGTGAGAATAAATTTTAATGCCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAATCTTTAGAACATTTCTGTGAGAATAAATTTTAATGCCCATTT  150

seq1  TATTAAGAGAGCAAACCAAGCTTCAGAGAGATTAACTGATTTAATATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAGAGCAAACCAAGCTTCAGAGAGATTAACTGATTTAATATCCC  200

seq1  AAGCTCATAATGTTTGGTCAAACATTGAGTTTGAAACTGGAGTTTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATAATGTTTGGTCAAACATTGAGTTTGAAACTGGAGTTTTCTGA  250

seq1  TTCTACATTGGCCTTCATAACCCCTATGAGTGAGGCTTGGTTTTCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTGGCCTTCATAACCCCTATGAGTGAGGCTTGGTTTTCCCCTA  300

seq1  TCCTGCACGAAGCACACATGGTTCCTTCTGGAGTCTTGATGGGAAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACGAAGCACACATGGTTCCTTCTGGAGTCTTGATGGGAAAGGAG  350

seq1  CCAAGGTAGTGAGCATCATGGCTGGTCTGTGTGTGCACAACATAAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTAGTGAGCATCATGGCTGGTCTGTGTGTGCACAACATAAGATTT  400

seq1  GTCAACACTGATGGGCAAGAAATGGCCTTGCTGCTACACCAGCTCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACACTGATGGGCAAGAAATGGCCTTGCTGCTACACCAGCTCTGCTC  450

seq1  CTCCACATCACATTGGCCTCTCTCATCCGAGCAAGAATTC  490
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATCACATTGGCCTCTCTCATCCGAGCAAGAATTC  490