BAC Information

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BAC

Clone NameB6Ng01-282E10
Chromosome6 (Build37)
Map Location 46,418,992 - 46,535,135
singlet/doubletdoublet
Overlap geneCntnap2, Rbpsuh-rs3
Upstream genenone
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282E10.bB6Ng01-282E10.g
ACCGA081536GA081537
length1,146769
definitionB6Ng01-282E10.b B6Ng01-282E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,533,982 - 46,535,135)(46,418,992 - 46,419,758)
sequence
gaattccagtcaaggactacttttttctggaaatatctgtgctatgtttt
ctaatgagtctcatcagagaggttaactgcttgacttcttgaaatgattg
acttcttctgaggaaaaaaaaagcaaacacattgatttactaacataatc
cttagaaaacttgtgtttaaaaattcaagtaatacttttatcatatagag
aactaaaaacaaataaatttcatttaaaataacctatgtactgtctatct
gtctatctatctatctatctatctatctatctatctatcatctatctatc
tatgtatctgtctgtctgtctgtcagtcaatcaatcaatcatcatctctt
tgtaacattaataatctttattctataacaaatctgacaatctactcagt
ggattatgtagaacatggccctaatgaagcaaaagacatggaatgtgagt
ctaaaacaatgtgttgtttcgtatagagaaaaacatctgtgctcttattt
gtaccactggctacagaaaacacattacaaaatactcactgatggccaca
gggtggcccataaaatggtcatctccctggatcgatgtaatctatcacca
ttattagaaaaaaaggatttcagacagctcttctctgcttcccattcaag
taccctctgatcccattatgtgatctcagaaataatgtcaaattattggg
tagcagaaggaaaagccagttttgtgaagcaagagaatgcacgccttgga
gacaggttgttttgtgtccagctaaaccagtaccagttgattttagtctg
atgaattaataacaatgtgagttttcatccaaacatcacaatctgcctcc
ttgtatgtagaacaggtgtagaacgctggtctcagagttcctgagaatac
tgggtaggttagctgtgtgcagtgattaagatgggtccttatggcaaata
aaattctcagcaagtgttgtcttccttctcattaatggaagcagaaataa
taacataattcatgtgatgattggaataatcagaataaaaaattatacaa
ctgatgctagcttcattagaaccaagaagatatgactgactaacatgcta
agggcagtatttctttatagaagaagcccctgtgtgccttaaatta

gaattcactggggaaaaagaagaagaaaaagtgaaaaaagtaaaggaaag
ataaagggagagagaaaaatcacctaatacatttgtacttctgttataat
taaggtgataacaccagttagagtctcttgaatatgttcaccctgctatc
ttaaggattttctttccctaaaaagttatttctagctaattatcctcact
aaggaatgtaatctgtcagcctgtcttgctaatgttcctcacaatggagg
ctgctccagtgaatagaaactgacttaatggagaaaattagatacttaga
ggagttgattatttggggattttcttccaaggtgaaaaatgtcatctatc
ccatcaagaaatttttaacagggcctgctggagggagaagaagggctcca
atctctcacagggaagccactgagatacacactattgttacctttcttat
gtgcctcatcttcccatgcttgggaatgacagggattaagggtcaaggtg
agtacccaaggagctgaaggggtagcagccccataggaggaagaacaata
tgaactaaccagtatccccagagatcccagggactaaaccaccaaccaaa
gaagacacatggtgggactcatggctctagctgcatatgtagtagaggat
ggcctagtaagtcatcaatgggaggagaggccctaggtcctgtgaaggtt
ctatgccccagtataggggaatgccaggtagtggacgtagggtgggttgg
ggaacaggggggaggtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46533982_46535135
seq2: B6Ng01-282E10.b_49_1194 (reverse)

seq1  TAATTTAAGGCACA-GGGGGCTTCTTTTCTATATAAGAATTAACCTTGCC  49
      ||||||||||||||  ||||||||  ||||||| ||||| ||    ||||
seq2  TAATTTAAGGCACACAGGGGCTTC--TTCTATA-AAGAAATA---CTGCC  44

seq1  CCTAGCCATGTTAATTCCAGTCATTAATC-TCTTGG-TCTAATG-AGCTA  96
      | ||| ||||||| |  |||||||  ||| |||||| ||||||| |||||
seq2  CTTAG-CATGTTAGT--CAGTCAT--ATCTTCTTGGTTCTAATGAAGCTA  89

seq1  GCCATCAGTTGTATAATTTTT--ATCTGATTATTCCAATTCATCACATTG  144
      | |||||||||||||||||||   |||||||||||||| |||||||| ||
seq2  G-CATCAGTTGTATAATTTTTTATTCTGATTATTCCAA-TCATCACA-TG  136

seq1  AATTATGTTATTATTTCTGCCTTCCATTAATGAGAAGG-AGACAACACTT  193
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  AATTATGTTATTATTTCTG-CTTCCATTAATGAGAAGGAAGACAACACTT  185

seq1  GCTGAGAATTTTATTTTGCCATAAGGA-CCATCTTAATCACTGCACACAG  242
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  GCTGAGAATTTTA-TTTGCCATAAGGACCCATCTTAATCACTGCACACAG  234

seq1  CTAACCTACCCAGTATTCTCAGGAACTCTGAGACCAGCCTTCTACACCTG  292
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAACCTACCCAGTATTCTCAGGAACTCTGAGACCAGCGTTCTACACCTG  284

seq1  TTCTACATACAAGGAGGCAGATTGTGATGTTTGGATGAAAACTCACATTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATACAAGGAGGCAGATTGTGATGTTTGGATGAAAACTCACATTG  334

seq1  TTATTAATTCATCAGACTAAAATCAACTGGTACTGGTTTAGCTGGACACA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTCATCAGACTAAAATCAACTGGTACTGGTTTAGCTGGACACA  384

seq1  AAACAACCTGTCTCCAAGGCCTGCATTCTCTTGCTTCACAAAACTGGCTT  442
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACAACCTGTCTCCAAGGCGTGCATTCTCTTGCTTCACAAAACTGGCTT  434

seq1  TTCCTTCTGCTACCCAATAATTTGACATTATTTCTGAGATCACATAATGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGCTACCCAATAATTTGACATTATTTCTGAGATCACATAATGG  484

seq1  GATCAGAGGGTACTTGAATGGGAAGCAGAGAAGAGCTGTCTGAAATCCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGGGTACTTGAATGGGAAGCAGAGAAGAGCTGTCTGAAATCCTT  534

seq1  TTTTTCTAATAATGGTGATAGATTACATCGATCCAGGGAGATGACCATTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAATAATGGTGATAGATTACATCGATCCAGGGAGATGACCATTT  584

seq1  TATGGGCCACCCTGTGGCCATCAGTGAGTATTTTGTAATGTGTTTTCTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCCACCCTGTGGCCATCAGTGAGTATTTTGTAATGTGTTTTCTGT  634

seq1  AGCCAGTGGTACAAATAAGAGCACAGATGTTTTTCTCTATACGAAACAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGGTACAAATAAGAGCACAGATGTTTTTCTCTATACGAAACAAC  684

seq1  ACATTGTTTTAGACTCACATTCCATGTCTTTTGCTTCATTAGGGCCATGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTTTAGACTCACATTCCATGTCTTTTGCTTCATTAGGGCCATGT  734

seq1  TCTACATAATCCACTGAGTAGATTGTCAGATTTGTTATAGAATAAAGATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAATCCACTGAGTAGATTGTCAGATTTGTTATAGAATAAAGATT  784

seq1  ATTAATGTTACAAAGAGATGATGATTGATTGATTGACTGACAGACAGACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTACAAAGAGATGATGATTGATTGATTGACTGACAGACAGACA  834

seq1  GACAGATACATAGATAGATAGATGATAGATAGATAGATAGATAGATAGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACATAGATAGATAGATGATAGATAGATAGATAGATAGATAGAT  884

seq1  AGATAGATAGACAGATAGACAGTACATAGGTTATTTTAAATGAAATTTAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGACAGATAGACAGTACATAGGTTATTTTAAATGAAATTTAT  934

seq1  TTGTTTTTAGTTCTCTATATGATAAAAGTATTACTTGAATTTTTAAACAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAGTTCTCTATATGATAAAAGTATTACTTGAATTTTTAAACAC  984

seq1  AAGTTTTCTAAGGATTATGTTAGTAAATCAATGTGTTTGCTTTTTTTTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTAAGGATTATGTTAGTAAATCAATGTGTTTGCTTTTTTTTTC  1034

seq1  CTCAGAAGAAGTCAATCATTTCAAGAAGTCAAGCAGTTAACCTCTCTGAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGAAGTCAATCATTTCAAGAAGTCAAGCAGTTAACCTCTCTGAT  1084

seq1  GAGACTCATTAGAAAACATAGCACAGATATTTCCAGAAAAAAGTAGTCCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCATTAGAAAACATAGCACAGATATTTCCAGAAAAAAGTAGTCCT  1134

seq1  TGACTGGAATTC  1154
      ||||||||||||
seq2  TGACTGGAATTC  1146


seq1: chr6_46418992_46419758
seq2: B6Ng01-282E10.g_68_836

seq1  GAATTCACTGGGGAAAAAGAAGAAGAAAAAGTGAAAAAAGTAAAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGGAAAAAGAAGAAGAAAAAGTGAAAAAAGTAAAGGAAAG  50

seq1  ATAAAGGGAGAGAGAAAAATCACCTAATACATTTGTACTTCTGTTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAGAGAGAAAAATCACCTAATACATTTGTACTTCTGTTATAAT  100

seq1  TAAGGTGATAACACCAGTTAGAGTCTCTTGAATATGTTCACCCTGCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGATAACACCAGTTAGAGTCTCTTGAATATGTTCACCCTGCTATC  150

seq1  TTAAGGATTTTCTTTCCCTAAAAAGTTATTTCTAGCTAATTATCCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATTTTCTTTCCCTAAAAAGTTATTTCTAGCTAATTATCCTCACT  200

seq1  AAGGAATGTAATCTGTCAGCCTGTCTTGCTAATGTTCCTCACAATGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGTAATCTGTCAGCCTGTCTTGCTAATGTTCCTCACAATGGAGG  250

seq1  CTGCTCCAGTGAATAGAAACTGACTTAATGGAGAAAATTAGATACTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGTGAATAGAAACTGACTTAATGGAGAAAATTAGATACTTAGA  300

seq1  GGAGTTGATTATTTGGGGATTTTCTTCCAAGGTGAAAAATGTCATCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGATTATTTGGGGATTTTCTTCCAAGGTGAAAAATGTCATCTATC  350

seq1  CCATCAAGAAATTTTTAACAGGGCCTGCTGGAGGGAGAAGAAGGGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGAAATTTTTAACAGGGCCTGCTGGAGGGAGAAGAAGGGCTCCA  400

seq1  ATCTCTCACAGGGAAGCCACTGAGATACACACTATTGTTACCTTTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCACAGGGAAGCCACTGAGATACACACTATTGTTACCTTTCTTAT  450

seq1  GTGCCTCATCTTCCCATGCTTGGGAATGACAGGGATTAAGGGTCAAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCATCTTCCCATGCTTGGGAATGACAGGGATTAAGGGTCAAGGTG  500

seq1  AGTACCCAAGGAGCTGAAGGGGTAGCAGCCCCATAGGAGGAAGAACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCAAGGAGCTGAAGGGGTAGCAGCCCCATAGGAGGAAGAACAATA  550

seq1  TGAACTAACCAGTATCCCCAGAGATCCCAGGGACTAAACCACCAACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACCAGTATCCCCAGAGATCCCAGGGACTAAACCACCAACCAAA  600

seq1  GAAGACACATGGTGGGACTCATGGCTCTAGCTGCATATGTAGTAGAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACATGGTGGGACTCATGGCTCTAGCTGCATATGTAGTAGAGGAT  650

seq1  GGCCTAGTAAGTCATCAATGGGAGGAGAGGCCCTAGGTCCTGTGAAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTAAGTCATCAATGGGAGGAGAGGCCCTAGGTCCTGTGAAGGTT  700

seq1  CTATGCCCCAGTATAGGGGAATGCCAGGTAGTGGACGTA-GGTGGGTTGG  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATGCCCCAGTATAGGGGAATGCCAGGTAGTGGACGTAGGGTGGGTTGG  750

seq1  GGAACA-GGGGGAGGTGTT  767
      |||||| ||||||||||||
seq2  GGAACAGGGGGGAGGTGTT  769


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